CF832892

Overview
NameCF832892
Unique NameCF832892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1030 contig Csv1_Contig1030:1..765. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF832892 vs. ExPASy Swiss-Prot
Match: H32_USTMA (Histone H3.2 OS=Ustilago maydis GN=HHT2 PE=3 SV=3)

HSP 1 Score: 219.935 bits (559), Expect = 1.191e-56
Identity = 112/120 (93.33%), Postives = 116/120 (96.67%), Query Frame = 1 
Query:  406 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 765
            MARTKQTARKSTGGKAPRKQLATKAARKSAP+ GGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQE+AEAYLV LFEDTNL AIHAKRVTI
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSAGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQESAEAYLVSLFEDTNLAAIHAKRVTI 120
[Close]
BLAST of CF832892 vs. ExPASy Swiss-Prot
Match: H3_MORAP (Histone H3 OS=Mortierella alpina GN=H3.1 PE=3 SV=3)

HSP 1 Score: 218.779 bits (556), Expect = 2.654e-56
Identity = 112/120 (93.33%), Postives = 115/120 (95.83%), Query Frame = 1 
Query:  406 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 765
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLV LFEDTNL AIHAKRVTI
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEASEAYLVSLFEDTNLAAIHAKRVTI 120
[Close]
BLAST of CF832892 vs. ExPASy Swiss-Prot
Match: H3L_XENLA (Histone H3-like OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 218.394 bits (555), Expect = 3.466e-56
Identity = 110/120 (91.67%), Postives = 114/120 (95.00%), Query Frame = 1 
Query:  406 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 765
            MARTKQTARKSTGGKAPRKQL TKAA+K AP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ  AV+ALQEA+EAYLV LFEDTNLCAIHAKRVTI
Sbjct:    1 MARTKQTARKSTGGKAPRKQLVTKAAKKCAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQRSAVMALQEASEAYLVALFEDTNLCAIHAKRVTI 120
[Close]
BLAST of CF832892 vs. ExPASy Swiss-Prot
Match: H33_CHLRE (Histone H3 type 3 OS=Chlamydomonas reinhardtii GN=ch3-IV PE=1 SV=2)

HSP 1 Score: 218.394 bits (555), Expect = 3.466e-56
Identity = 114/120 (95.00%), Postives = 116/120 (96.67%), Query Frame = 1 
Query:  406 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 765
            MARTKQTARKSTGGKAPRKQLATKAARK+ P TGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEAAEAYLVGLFEDTNLCAI AKRVTI
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKT-PATGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSQAVVALQEAAEAYLVGLFEDTNLCAITAKRVTI 119
[Close]
BLAST of CF832892 vs. ExPASy Swiss-Prot
Match: H3L5_ARATH (Putative histone H3-like 5 OS=Arabidopsis thaliana GN=At5g65350 PE=5 SV=3)

HSP 1 Score: 218.009 bits (554), Expect = 4.527e-56
Identity = 111/120 (92.50%), Postives = 115/120 (95.83%), Query Frame = 1 
Query:  406 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 765
            MARTKQTAR STGGKAPRKQLA KAAR+SAP TGGVKKPHR+RPGTVALR+IRKYQKSTE+LIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct:    1 MARTKQTARISTGGKAPRKQLAPKAARQSAPATGGVKKPHRFRPGTVALRDIRKYQKSTEILIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
[Close]
BLAST of CF832892 vs. ExPASy Swiss-Prot
Match: H33B_LILLO (Histone H3.3b OS=Lilium longiflorum GN=soH3-1 PE=2 SV=3)

HSP 1 Score: 218.009 bits (554), Expect = 4.527e-56
Identity = 112/121 (92.56%), Postives = 116/121 (95.87%), Query Frame = 1 
Query:  406 MARTKQTARKSTGGKAPRKQLATKAARKSAPT-TGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 765
            MARTKQTARKSTGGKAPRKQLATKAARKS PT  GG+K+P RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQD+KTDLRFQSHAVLALQE AEAYLVG+FEDTNLCAIHAKRVTI
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSIPTGMGGMKRPRRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDYKTDLRFQSHAVLALQEGAEAYLVGIFEDTNLCAIHAKRVTI 121
[Close]
BLAST of CF832892 vs. ExPASy Swiss-Prot
Match: H31_SCHPO (Histone H3.1/H3.2 OS=Schizosaccharomyces pombe GN=hht1 PE=1 SV=2)

HSP 1 Score: 217.624 bits (553), Expect = 5.913e-56
Identity = 110/120 (91.67%), Postives = 114/120 (95.00%), Query Frame = 1 
Query:  406 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 765
            MARTKQTARKSTGGKAPRKQLA+KAARK+AP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA EAYLV LFEDTNLCAIH KRVTI
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTI 120
[Close]
BLAST of CF832892 vs. ExPASy Swiss-Prot
Match: H3_PHANO (Histone H3 OS=Phaeosphaeria nodorum GN=HHT1 PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.009e-55
Identity = 109/120 (90.83%), Postives = 116/120 (96.67%), Query Frame = 1 
Query:  406 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 765
            MARTKQTARKSTGGKAPRKQLA+KAARKSAP+TGGVKKPHRY+PGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFK+DLRFQS A+ ALQE+ EAYLV LFEDTNLCAIHAKRVTI
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTI 120
[Close]
BLAST of CF832892 vs. ExPASy Swiss-Prot
Match: H33_LODEL (Histone H3.3 OS=Lodderomyces elongisporus GN=HHT3 PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.009e-55
Identity = 109/120 (90.83%), Postives = 116/120 (96.67%), Query Frame = 1 
Query:  406 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 765
            MARTKQTARKSTGGKAPRKQLA+KAARKSAP +GGVKKPHRY+PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFK+DLRFQS A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPVSGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQEAVEAYLVGLFEDTNLCAIHAKRVTI 120
[Close]
BLAST of CF832892 vs. ExPASy Swiss-Prot
Match: H33_CANAL (Histone H3.3 OS=Candida albicans GN=HHT3 PE=3 SV=3)

HSP 1 Score: 216.853 bits (551), Expect = 1.009e-55
Identity = 109/120 (90.83%), Postives = 116/120 (96.67%), Query Frame = 1 
Query:  406 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 765
            MARTKQTARKSTGGKAPRKQLA+KAARKSAP +GGVKKPHRY+PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFK+DLRFQS A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPVSGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQEAVEAYLVGLFEDTNLCAIHAKRVTI 120
The following BLAST results are available for this feature:
BLAST of CF832892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
H32_USTMA1.191e-5693.33Histone H3.2 OS=Ustilago maydis GN=HHT2 PE=3 SV=3[more]
H3_MORAP2.654e-5693.33Histone H3 OS=Mortierella alpina GN=H3.1 PE=3 SV=3[more]
H3L_XENLA3.466e-5691.67Histone H3-like OS=Xenopus laevis PE=1 SV=2[more]
H33_CHLRE3.466e-5695.00Histone H3 type 3 OS=Chlamydomonas reinhardtii GN=... [more]
H3L5_ARATH4.527e-5692.50Putative histone H3-like 5 OS=Arabidopsis thaliana... [more]
H33B_LILLO4.527e-5692.56Histone H3.3b OS=Lilium longiflorum GN=soH3-1 PE=2... [more]
H31_SCHPO5.913e-5691.67Histone H3.1/H3.2 OS=Schizosaccharomyces pombe GN=... [more]
H3_PHANO1.009e-5590.83Histone H3 OS=Phaeosphaeria nodorum GN=HHT1 PE=3 S... [more]
H33_LODEL1.009e-5590.83Histone H3.3 OS=Lodderomyces elongisporus GN=HHT3 ... [more]
H33_CANAL1.009e-5590.83Histone H3.3 OS=Candida albicans GN=HHT3 PE=3 SV=3[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02J24_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02J24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832892 ID=CF832892; Name=CF832892; organism=Citrus sinensis; type=EST; length=765bp
TTTTTTTTAAATCTTCAATGTCACAAATCCTCAAATAAATCCTGAAACTC
TCAACAGTTAAACCCAAAAAAATAAAAATAAAAATAAAAACCAAAACCAA
AACAGTAACCTAGCCTATAGAATCATCCACTTCCAAGTCTTATAACCGTA
ACCAAGCCACATCTAGAATAAATTCAAAACTAGCATTTTTGAAATACTGC
AGCTCGCAACTTAAGAAACCAAGTTATCATTCAATGATAATGAGGCTAGT
TGATCAGCCGGATTACCAGCCTGCTGTTGCTGAGCAACATTCCTCAGAAC
CTCCATTGCCTCAGCCACTTTCGCTTTCAGAGCTTCTGGTGATTCGAGCA
AGTGCAAAACCTCAGCCTCGTGCCGATTGAGTGGAAGAGTTGAAGAAACT
CAGAGATGGCCCGTACCAAGCAAACTGCACGTAAGTCAACCGGAGGAAAG
GCTCCTAGGAAGCAACTTGCTACCAAGGCCGCCCGTAAGTCTGCGCCCAC
CACCGGTGGTGTTAAGAAGCCTCATCGTTACCGTCCTGGAACCGTCGCCC
TTCGAGAAATTCGCAAGTACCAGAAGAGTACCGAGCTGCTTATCAGGAAA
CTCCCATTCCAGAGACTTGTTCGTGAAATTGCTCAGGACTTTAAGACTGA
TCTGCGTTTCCAGAGCCATGCAGTACTGGCCCTGCAGGAGGCAGCGGAGG
CTTACCTTGTTGGTCTCTTCGAGGACACTAACCTCTGCGCCATTCATGCA
AAGCGTGTCACTATT
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