CF832912

Overview
NameCF832912
Unique NameCF832912
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length658
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832912 vs. ExPASy Swiss-Prot
Match: GABD_DEIRA (Succinate-semialdehyde dehydrogenase [NADP+] OS=Deinococcus radiodurans GN=ssdA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.319e-15
Identity = 46/108 (42.59%), Postives = 66/108 (61.11%), Query Frame = 3
Query:    9 SVLSNVKSEMLVST*EVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 332
            +VL++V  +M     E+FGPVA +   + E+EA+ +AN +  GL   +F+++L R  RV+E L+ G+V +N    S    PFGGVK+SG GRE S  GM EF   K V
Sbjct:  356 TVLTDVTPDMRAYHEELFGPVAVVYRVRDEDEAVALANASTYGLGGAVFSSDLDRAQRVAERLDTGMVWINHPTSSAADLPFGGVKRSGFGRELSSMGMLEFTNQKLV 463          
BLAST of CF832912 vs. ExPASy Swiss-Prot
Match: BETB_PSEFS (Betaine aldehyde dehydrogenase OS=Pseudomonas fluorescens (strain SBW25) GN=betB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.319e-15
Identity = 46/108 (42.59%), Postives = 62/108 (57.41%), Query Frame = 3
Query:    9 SVLSNVKSEMLVST*EVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 332
            +V ++   EM +   E+FGPV  +L ++TEEE I  ANDT+ GLAA + T +L R  RV   LE G+  +N    S    P GG KQSG+GRE     ++ F  IK V
Sbjct:  372 TVFTDCTDEMTIVREEIFGPVMSILTYETEEEVIRRANDTDFGLAAGLVTKDLNRAHRVIHQLEAGICWINAWGESDAKMPVGGYKQSGVGRENGISSLNNFTRIKSV 479          
BLAST of CF832912 vs. ExPASy Swiss-Prot
Match: BETB_RHISN (Betaine aldehyde dehydrogenase OS=Rhizobium sp. (strain NGR234) GN=betB PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.723e-15
Identity = 45/111 (40.54%), Postives = 66/111 (59.46%), Query Frame = 3
Query:    9 SVLSNVKSEMLVST*EVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCLG 341
            +V ++V  EM ++  E+FGPV  +L F  E E +  AN T  GL+A +FT +L R  RV + LE G + +N   ++    PFGG KQSG GRE S   ++ + E+K V +G
Sbjct:  369 TVFADVTDEMTIAREEIFGPVMCVLDFDDEAEVVARANATEFGLSAGVFTADLTRAHRVVDQLEAGTLWINTYNLAPVEIPFGGSKQSGFGRENSVAALNHYTELKTVYVG 479          
BLAST of CF832912 vs. ExPASy Swiss-Prot
Match: BETB_PSEPF (Betaine aldehyde dehydrogenase OS=Pseudomonas fluorescens (strain Pf0-1) GN=betB PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.723e-15
Identity = 46/108 (42.59%), Postives = 62/108 (57.41%), Query Frame = 3
Query:    9 SVLSNVKSEMLVST*EVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 332
            +V ++   +M +   E+FGPV  +L ++TEEE I  ANDT+ GLAA I T +L R  RV   LE G+  +N    S    P GG KQSG+GRE     ++ F  IK V
Sbjct:  372 TVFTDCTDDMTIVREEIFGPVMAILSYETEEEVIRRANDTDFGLAAGIVTRDLNRAHRVIHQLEAGICWINAWGESDAKMPVGGYKQSGVGRENGISSLNNFTRIKSV 479          
BLAST of CF832912 vs. ExPASy Swiss-Prot
Match: ALDH_ASPNG (Aldehyde dehydrogenase OS=Aspergillus niger GN=aldA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.723e-15
Identity = 45/108 (41.67%), Postives = 65/108 (60.19%), Query Frame = 3
Query:    9 SVLSNVKSEMLVST*EVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 332
            +V ++V S+M ++  E+FGPV  +  FK  E+AI + N T+ GLAA I T ++    RVS AL  G V VN   +     PFGG K+SG+GRE   Y ++ + +IK V
Sbjct:  381 TVFTDVTSDMKINQEEIFGPVVTVQKFKDVEDAIKIGNSTSYGLAAGIHTKDVTTAIRVSNALRAGTVWVNSYNLIQYQVPFGGFKESGIGRELGSYALENYTQIKAV 488          
BLAST of CF832912 vs. ExPASy Swiss-Prot
Match: DMPC_PSEUF (2-hydroxymuconic semialdehyde dehydrogenase OS=Pseudomonas sp. (strain CF600) GN=dmpC PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.251e-15
Identity = 43/99 (43.43%), Postives = 59/99 (59.60%), Query Frame = 3
Query:   42 VST*EVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCL 338
            V T E+FGP   +  F  EEEA+ +AN    GLAA I+T N  R  RV+  LE G+V VN   +      FGG KQSG+GREG  + ++ + E+K +C+
Sbjct:  386 VVTEEIFGPCCHIRPFDREEEAVELANSLPYGLAATIWTENTSRAHRVAGQLEAGIVWVNSWFLRDLRTAFGGSKQSGIGREGGVHSLEFYTELKNICV 484          
BLAST of CF832912 vs. ExPASy Swiss-Prot
Match: ALDH5_BACSU (Putative aldehyde dehydrogenase yfmT OS=Bacillus subtilis GN=yfmT PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.251e-15
Identity = 41/109 (37.61%), Postives = 71/109 (65.14%), Query Frame = 3
Query:    9 SVLSNVKSEMLVST*EVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEV-APFGGVKQSGLGREGSKYGMDEFLEIKYV 332
            ++L +VK  M ++  E+FGPV   + F +E+EA+ +AN+T  GL+  + T+NL+R    ++ +E G++ VN+  I+ E    FGG KQSGLGR   ++ ++EF  +K++
Sbjct:  366 TILKDVKPFMSIAKEELFGPVVSFMKFDSEDEAVDIANETPFGLSGAVHTSNLERGVAFAKRIETGMIHVNDTTINDEPNVAFGGEKQSGLGRLNGEWSLEEFTTLKWI 474          
BLAST of CF832912 vs. ExPASy Swiss-Prot
Match: ALDH2_BOVIN (Aldehyde dehydrogenase, mitochondrial OS=Bos taurus GN=ALDH2 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.251e-15
Identity = 44/108 (40.74%), Postives = 67/108 (62.04%), Query Frame = 3
Query:    9 SVLSNVKSEMLVST*EVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 332
            +V  +V+  M ++  E+FGPV  +L FK+ EE +  AN++  GLAA +FT +L +   +S+AL+ G V VN   +    +PFGG K SG GRE  +YG+  + E+K V
Sbjct:  404 TVFGDVQDGMTIAKEEIFGPVMQILKFKSMEEVVGRANNSKYGLAAAVFTKDLDKANYLSQALQAGTVWVNCYDVFGAQSPFGGYKLSGSGRELGEYGLQAYTEVKTV 511          
BLAST of CF832912 vs. ExPASy Swiss-Prot
Match: LADH_METJA (Lactaldehyde dehydrogenase OS=Methanocaldococcus jannaschii GN=MJ1411 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 2.939e-15
Identity = 47/111 (42.34%), Postives = 69/111 (62.16%), Query Frame = 3
Query:    9 SVLSNVKSEMLVST*EVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEG-LISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCL 338
            ++L   +  +L  T E F PV P++    EEE I +AN T  GL + IFTN++ ++ + +E LE+G V +N+  L   +  PFGGVK+SGLGREG KY M+E   IK + +
Sbjct:  353 TILEVDRDNILCKT-ETFAPVIPIIR-TNEEEMIDIANSTEYGLHSAIFTNDINKSLKFAENLEFGGVVINDSSLFRQDNMPFGGVKKSGLGREGVKYAMEEMSNIKTIII 461          
BLAST of CF832912 vs. ExPASy Swiss-Prot
Match: CROM_OMMSL (Omega-crystallin OS=Ommastrephes sloanei PE=2 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 2.939e-15
Identity = 46/108 (42.59%), Postives = 65/108 (60.19%), Query Frame = 3
Query:    9 SVLSNVKSEMLVST*EVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 332
            +V S+V  EM  S  E+FGPV  ++ FK  +E I   N+T+ G+AA IFTN++ R+   + A+  G V VN        APFGG K+SGL RE  KY + E+ E+K +
Sbjct:  379 TVFSDVTDEMKFSQEEIFGPVQLIMKFKDMDEVIDRCNNTDYGMAAAIFTNDINRSITFTHAMYCGTVWVNTYNHWFPQAPFGGYKKSGLYREMGKYTLQEYTEVKNI 486          
The following BLAST results are available for this feature:
BLAST of CF832912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 317
Match NameE-valueIdentityDescription
GABD_DEIRA1.319e-1542.59Succinate-semialdehyde dehydrogenase [NADP+] OS=De... [more]
BETB_PSEFS1.319e-1542.59Betaine aldehyde dehydrogenase OS=Pseudomonas fluo... [more]
BETB_RHISN1.723e-1540.54Betaine aldehyde dehydrogenase OS=Rhizobium sp. (s... [more]
BETB_PSEPF1.723e-1542.59Betaine aldehyde dehydrogenase OS=Pseudomonas fluo... [more]
ALDH_ASPNG1.723e-1541.67Aldehyde dehydrogenase OS=Aspergillus niger GN=ald... [more]
DMPC_PSEUF2.251e-1543.432-hydroxymuconic semialdehyde dehydrogenase OS=Pse... [more]
ALDH5_BACSU2.251e-1537.61Putative aldehyde dehydrogenase yfmT OS=Bacillus s... [more]
ALDH2_BOVIN2.251e-1540.74Aldehyde dehydrogenase, mitochondrial OS=Bos tauru... [more]
LADH_METJA2.939e-1542.34Lactaldehyde dehydrogenase OS=Methanocaldococcus j... [more]
CROM_OMMSL2.939e-1542.59Omega-crystallin OS=Ommastrephes sloanei PE=2 SV=3[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02K13_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02K13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832912 ID=CF832912; Name=CF832912; organism=Citrus sinensis; type=EST; length=658bp
TTATAGCCTCAGTCCTTAGCAATGTCAAGAGTGAGATGCTTGTTTCGACA
TAGGAAGTATTCGGACCTGTGGCCCCACTTCTATGCTTCAAAACTGAGGA
GGAAGCTATCCATATGGCCAATGATACCAATGCAGGGTTAGCTGCTTATA
TATTTACAAACAATCTTCAACGTACATGGCGTGTCTCTGAAGCTCTAGAA
TATGGACTCGTTGGTGTTAATGAAGGATTAATTTCAACAGAGGTGGCTCC
TTTTGGTGGTGTTAAACAATCTGGTCTTGGACGGGAAGGTTCAAAGTATG
GGATGGATGAATTCCTGGAAATAAAATATGTGTGCTTGGGAGACATGAAC
AGAAAATGATGGGCCAGTTTTGTACCTGTATGTTACCGGGCTTATGGAGA
AGAAGGAAGGAGCCTTTAGTACTGCCTTTGAACTGTATTTTGAAGACGGA
TTGGAATAGTGTGAGCCTCAAGCGTTTGATGTGGAGGTAGTAGTGAGCCA
TAGTTGGTTTGCTATTGATACCCCATGTACATAAATAAGTTTGCAAAATG
GAACTTGAATGTCTAGTAGTGAGCCATAGGTGGTTTGCTATTGATACCCC
ATGTACATAAATAAGTTTGCAAAATGGAACTTGAATGTCTGGTGTCAAAA
AAAAAAAA
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