CF832912

Overview
NameCF832912
Unique NameCF832912
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length658
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832912 vs. ExPASy Swiss-Prot
Match: BETB_RHIE6 (Betaine aldehyde dehydrogenase OS=Rhizobium etli (strain CIAT 652) GN=betB PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.939e-15
Identity = 44/111 (39.64%), Postives = 66/111 (59.46%), Query Frame = 3
Query:    9 SVLSNVKSEMLVST*EVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCLG 341
            +V ++V  EM ++  E+FGPV  +L F  E+E I  AN +  GL+  +FT +L R  RV + LE G + +N   ++    PFGG KQSG GRE S   ++ + E+K V +G
Sbjct:  369 TVFADVTDEMTIAREEIFGPVMSVLDFDDEDEVITRANASEFGLSGGVFTADLTRAHRVVDRLEAGTLWINAYNLAPVEIPFGGSKQSGFGRENSLAALEHYSELKTVYVG 479          
BLAST of CF832912 vs. ExPASy Swiss-Prot
Match: BETB_PSEF5 (Betaine aldehyde dehydrogenase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=betB PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.939e-15
Identity = 45/108 (41.67%), Postives = 62/108 (57.41%), Query Frame = 3
Query:    9 SVLSNVKSEMLVST*EVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 332
            +V ++   +M +   E+FGPV  +L ++TEEE I  ANDT+ GLAA + T +L R  RV   LE G+  +N    S    P GG KQSG+GRE     ++ F  IK V
Sbjct:  372 TVFTDCTDDMTIVREEIFGPVMAILTYETEEEVIRRANDTDFGLAAGLVTKDLNRAHRVIHQLEAGICWINAWGESDAKMPVGGYKQSGVGRENGISSLNNFTRIKSV 479          
BLAST of CF832912 vs. ExPASy Swiss-Prot
Match: BADH_HORVU (Betaine aldehyde dehydrogenase OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.939e-15
Identity = 41/108 (37.96%), Postives = 69/108 (63.89%), Query Frame = 3
Query:    9 SVLSNVKSEMLVST*EVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 332
            ++ + V + M +   EVFGPV  +  FKTE EA+ +ANDT+ GLA  + +++L+R  R+++ +  G+V  N    +   AP+GG K+SG GRE  ++G++ +L +K V
Sbjct:  380 TINTGVSTSMQIWREEVFGPVICVKVFKTESEAVELANDTHYGLAGGVISDDLERCERIAKVIHSGIVWKNCSQPTLVQAPWGGNKRSGFGRELGEWGLENYLSVKQV 487          
BLAST of CF832912 vs. ExPASy Swiss-Prot
Match: AL1A2_TAEGU (Retinal dehydrogenase 2 OS=Taeniopygia guttata GN=ALDH1A2 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.939e-15
Identity = 45/110 (40.91%), Postives = 68/110 (61.82%), Query Frame = 3
Query:    9 SVLSNVKSEMLVST*EVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCL 338
            +V SNV  +M ++  E+FGPV  +L FKT +E I  AN+++ GL A +FTN++ +   VS A++ G V +N        +PFGG K SG GRE  + G+ E+ E+K V +
Sbjct:  402 TVFSNVTDDMRIAKEEIFGPVQEILRFKTMDEVIERANNSDFGLVAAVFTNDINKALTVSSAMQAGTVWINCYNALNAQSPFGGSK-SGNGREMGECGLREYSEVKTVTI 510          
BLAST of CF832912 vs. ExPASy Swiss-Prot
Match: BETB_SINMW (Betaine aldehyde dehydrogenase OS=Sinorhizobium medicae (strain WSM419) GN=betB PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.839e-15
Identity = 45/111 (40.54%), Postives = 64/111 (57.66%), Query Frame = 3
Query:    9 SVLSNVKSEMLVST*EVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCLG 341
            +V ++V  EM ++  E+FGPV  +L F  E E +  AN T  GL+A +FT +L R  RV + LE G + +N   +     PFGG KQSG GRE S   +  + E+K V +G
Sbjct:  369 TVFADVTDEMTIAREEIFGPVMCVLDFDDEAEVVARANATEFGLSAGVFTADLTRAHRVVDRLEAGTLWINTYNLCPVEIPFGGSKQSGFGRENSAEALKHYTELKTVYVG 479          
BLAST of CF832912 vs. ExPASy Swiss-Prot
Match: BETB_PSEPK (Betaine aldehyde dehydrogenase OS=Pseudomonas putida (strain KT2440) GN=betB PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.839e-15
Identity = 43/108 (39.81%), Postives = 63/108 (58.33%), Query Frame = 3
Query:    9 SVLSNVKSEMLVST*EVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 332
            +V ++   +M +   E+FGPV  +L ++TEEE I  ANDT+ GLAA + TN++ R  R+   LE G+  +N    S    P GG KQSG+GRE     + ++  IK V
Sbjct:  372 TVFTDCTDDMTIVKEEIFGPVMSILTYETEEEVIRRANDTDYGLAAGVCTNDITRAHRIIHKLEAGICWINAWGESPAEMPVGGYKQSGVGRENGVSSLAQYTRIKSV 479          
BLAST of CF832912 vs. ExPASy Swiss-Prot
Match: BETB_PSEPG (Betaine aldehyde dehydrogenase OS=Pseudomonas putida (strain GB-1) GN=betB PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.839e-15
Identity = 43/108 (39.81%), Postives = 62/108 (57.41%), Query Frame = 3
Query:    9 SVLSNVKSEMLVST*EVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 332
            +V ++   +M +   E+FGPV  +L ++TEEE I  ANDT  GLAA + TN++ R  R+   LE G+  +N    S    P GG KQSG+GRE     + ++  IK V
Sbjct:  372 TVFTDCSDDMTIVKEEIFGPVMSILSYETEEEVIRRANDTEYGLAAGVCTNDITRAHRIIHKLEAGICWINAWGESPAEMPVGGYKQSGVGRENGVSSLAQYTRIKSV 479          
BLAST of CF832912 vs. ExPASy Swiss-Prot
Match: BETB_PSEP1 (Betaine aldehyde dehydrogenase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=betB PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.839e-15
Identity = 43/108 (39.81%), Postives = 63/108 (58.33%), Query Frame = 3
Query:    9 SVLSNVKSEMLVST*EVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 332
            +V ++   +M +   E+FGPV  +L ++TEEE I  ANDT+ GLAA + TN++ R  R+   LE G+  +N    S    P GG KQSG+GRE     + ++  IK V
Sbjct:  372 TVFTDCTDDMTIVKEEIFGPVMSILTYETEEEVIRRANDTDYGLAAGVCTNDITRAHRIIHKLEAGICWINAWGESPAEMPVGGYKQSGVGRENGVSSLAQYTRIKSV 479          
BLAST of CF832912 vs. ExPASy Swiss-Prot
Match: BETB_PSEE4 (Betaine aldehyde dehydrogenase OS=Pseudomonas entomophila (strain L48) GN=betB PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.839e-15
Identity = 43/108 (39.81%), Postives = 62/108 (57.41%), Query Frame = 3
Query:    9 SVLSNVKSEMLVST*EVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 332
            +V ++   +M +   E+FGPV  +L ++TEEE I  ANDT  GLAA + TN++ R  R+   LE G+  +N    S    P GG KQSG+GRE     + ++  IK V
Sbjct:  372 TVFTDCTDDMTIVKEEIFGPVMSILSYETEEEVIRRANDTEYGLAAGVCTNDISRAHRIIHKLEAGICWINAWGESPAEMPVGGYKQSGVGRENGVSSLAQYTRIKSV 479          
BLAST of CF832912 vs. ExPASy Swiss-Prot
Match: BETB_RHILW (Betaine aldehyde dehydrogenase OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=betB PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.014e-15
Identity = 43/111 (38.74%), Postives = 66/111 (59.46%), Query Frame = 3
Query:    9 SVLSNVKSEMLVST*EVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCLG 341
            +V ++V  +M ++  E+FGPV  +L F  E+E I  AN +  GL+  +FT +L R  RV + LE G + +N   ++    PFGG KQSG GRE S   ++ + E+K V +G
Sbjct:  369 TVFADVTDDMTIAREEIFGPVMSVLDFDDEDEVIARANASEFGLSGGVFTADLSRAHRVVDRLEAGTLWINAYNLAPVEIPFGGSKQSGFGRENSLAALEHYSELKTVYVG 479          
The following BLAST results are available for this feature:
BLAST of CF832912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 317
Match NameE-valueIdentityDescription
BETB_RHIE62.939e-1539.64Betaine aldehyde dehydrogenase OS=Rhizobium etli (... [more]
BETB_PSEF52.939e-1541.67Betaine aldehyde dehydrogenase OS=Pseudomonas fluo... [more]
BADH_HORVU2.939e-1537.96Betaine aldehyde dehydrogenase OS=Hordeum vulgare ... [more]
AL1A2_TAEGU2.939e-1540.91Retinal dehydrogenase 2 OS=Taeniopygia guttata GN=... [more]
BETB_SINMW3.839e-1540.54Betaine aldehyde dehydrogenase OS=Sinorhizobium me... [more]
BETB_PSEPK3.839e-1539.81Betaine aldehyde dehydrogenase OS=Pseudomonas puti... [more]
BETB_PSEPG3.839e-1539.81Betaine aldehyde dehydrogenase OS=Pseudomonas puti... [more]
BETB_PSEP13.839e-1539.81Betaine aldehyde dehydrogenase OS=Pseudomonas puti... [more]
BETB_PSEE43.839e-1539.81Betaine aldehyde dehydrogenase OS=Pseudomonas ento... [more]
BETB_RHILW5.014e-1538.74Betaine aldehyde dehydrogenase OS=Rhizobium legumi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02K13_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02K13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832912 ID=CF832912; Name=CF832912; organism=Citrus sinensis; type=EST; length=658bp
TTATAGCCTCAGTCCTTAGCAATGTCAAGAGTGAGATGCTTGTTTCGACA
TAGGAAGTATTCGGACCTGTGGCCCCACTTCTATGCTTCAAAACTGAGGA
GGAAGCTATCCATATGGCCAATGATACCAATGCAGGGTTAGCTGCTTATA
TATTTACAAACAATCTTCAACGTACATGGCGTGTCTCTGAAGCTCTAGAA
TATGGACTCGTTGGTGTTAATGAAGGATTAATTTCAACAGAGGTGGCTCC
TTTTGGTGGTGTTAAACAATCTGGTCTTGGACGGGAAGGTTCAAAGTATG
GGATGGATGAATTCCTGGAAATAAAATATGTGTGCTTGGGAGACATGAAC
AGAAAATGATGGGCCAGTTTTGTACCTGTATGTTACCGGGCTTATGGAGA
AGAAGGAAGGAGCCTTTAGTACTGCCTTTGAACTGTATTTTGAAGACGGA
TTGGAATAGTGTGAGCCTCAAGCGTTTGATGTGGAGGTAGTAGTGAGCCA
TAGTTGGTTTGCTATTGATACCCCATGTACATAAATAAGTTTGCAAAATG
GAACTTGAATGTCTAGTAGTGAGCCATAGGTGGTTTGCTATTGATACCCC
ATGTACATAAATAAGTTTGCAAAATGGAACTTGAATGTCTGGTGTCAAAA
AAAAAAAA
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