CF832912

Overview
NameCF832912
Unique NameCF832912
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length658
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832912 vs. ExPASy Swiss-Prot
Match: LADH_METM5 (Lactaldehyde dehydrogenase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=MmarC5_0090 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.175e-18
Identity = 45/113 (39.82%), Postives = 72/113 (63.72%), Query Frame = 3
Query:    3 IASVLSNVKSEMLVST*EVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEG-LISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCL 338
            I+  + N+    ++S  E FGPV P+L  K  EEA+ +AN++  GL A +FTN++ +  +++++LEYG + +N       +  PFGGVK+SGLGREG KY ++E  E K + +
Sbjct:  350 ISPAVINIDENNILSKIETFGPVLPILKVKDSEEAVSIANNSKYGLQAGVFTNDINKAMKIADSLEYGGIMINSSPTFRKDNMPFGGVKKSGLGREGIKYTVEEMCETKTIVI 462          
BLAST of CF832912 vs. ExPASy Swiss-Prot
Match: BADH_SPIOL (Betaine aldehyde dehydrogenase, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.175e-18
Identity = 47/108 (43.52%), Postives = 73/108 (67.59%), Query Frame = 3
Query:    9 SVLSNVKSEMLVST*EVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 332
            ++++++ + M +   EVFGPV  +  F +E+EAI +ANDT  GLAA +F+N+L+R  R+++ALE G V VN        AP+GG+K+SG GRE  ++G+  +L IK V
Sbjct:  375 TIVTDISTSMQIWKEEVFGPVLCVKTFSSEDEAIALANDTEYGLAAAVFSNDLERCERITKALEVGAVWVNCSQPCFVQAPWGGIKRSGFGRELGEWGIQNYLNIKQV 482          
BLAST of CF832912 vs. ExPASy Swiss-Prot
Match: AL1A1_RAT (Retinal dehydrogenase 1 OS=Rattus norvegicus GN=Aldh1a1 PE=1 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 2.175e-18
Identity = 49/110 (44.55%), Postives = 71/110 (64.55%), Query Frame = 3
Query:    9 SVLSNVKSEMLVST*EVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCL 338
            +V SNV  EM ++  E+FGPV  ++ FK+ ++ I  AN+T  GLAA +FT +L R   VS AL+ G+V VN  +I +   PFGG K SG GRE  ++G+ E+ E+K V +
Sbjct:  385 TVFSNVTDEMRIAKEEIFGPVQQIMKFKSIDDVIKRANNTTYGLAAGVFTKDLDRAITVSSALQAGVVWVNCYMILSAQCPFGGFKMSGNGRELGEHGLYEYTELKTVAM 494          
BLAST of CF832912 vs. ExPASy Swiss-Prot
Match: BADH_ORYSJ (Betaine aldehyde dehydrogenase OS=Oryza sativa subsp. japonica GN=Os04g0464200 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.840e-18
Identity = 45/108 (41.67%), Postives = 73/108 (67.59%), Query Frame = 3
Query:    9 SVLSNVKSEMLVST*EVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 332
            ++++NV + M +   EVFGPV  +  F+TE EA+ +ANDT+ GLA  + +N+L+R  R+S+A++ G+V +N        AP+GG K+SG GRE  ++G+D +L +K V
Sbjct:  380 TIITNVSTSMQIWREEVFGPVICVKEFRTEREAVELANDTHYGLAGAVISNDLERCERISKAIQSGIVWINCSQPCFVQAPWGGNKRSGFGRELGQWGLDNYLSVKQV 487          
BLAST of CF832912 vs. ExPASy Swiss-Prot
Match: BADH1_ARATH (Betaine aldehyde dehydrogenase 1, chloroplastic OS=Arabidopsis thaliana GN=ALDH10A8 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.840e-18
Identity = 47/114 (41.23%), Postives = 74/114 (64.91%), Query Frame = 3
Query:    9 SVLSNVKSEMLVST*EVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCLGDMN 350
            +++++V + M +   EVFGPV  +  F +E+EAI +AND++ GL A + +N+ +R  R+SEA E G+V +N        AP+GGVK+SG GRE  ++G+D +L +K V L   N
Sbjct:  378 TIITDVTTSMQIWREEVFGPVLCVKTFASEDEAIELANDSHYGLGAAVISNDTERCDRISEAFEAGIVWINCSQPCFTQAPWGGVKRSGFGRELGEWGLDNYLSVKQVTLYTSN 491          
BLAST of CF832912 vs. ExPASy Swiss-Prot
Match: AL1A3_HUMAN (Aldehyde dehydrogenase family 1 member A3 OS=Homo sapiens GN=ALDH1A3 PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 2.840e-18
Identity = 52/116 (44.83%), Postives = 69/116 (59.48%), Query Frame = 3
Query:    9 SVLSNVKSEMLVST*EVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVC--LGDMN 350
            +V S V   M ++  E+FGPV P+L FK+ EE I  AN T+ GL A +FT NL +  +++ ALE G V +N        APFGG K SG GRE  +Y + E+ E+K V   LGD N
Sbjct:  396 TVFSEVTDNMRIAKEEIFGPVQPILKFKSIEEVIKRANSTDYGLTAAVFTKNLDKALKLASALESGTVWINCYNALYAQAPFGGFKMSGNGRELGEYALAEYTEVKTVTIKLGDKN 511          
BLAST of CF832912 vs. ExPASy Swiss-Prot
Match: ALDH2_MACPR (Aldehyde dehydrogenase, cytosolic 2 (Fragment) OS=Macroscelides proboscideus PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.710e-18
Identity = 49/110 (44.55%), Postives = 70/110 (63.64%), Query Frame = 3
Query:    9 SVLSNVKSEMLVST*EVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCL 338
            +V SNV  EM ++  E+FGPV  ++ FK+ +E I  AN+T  GLAA +FT +L +   VS AL+ G V VN  + ++   PFGG K SG GRE  +YG+ E+ E+K V +
Sbjct:  124 TVFSNVTDEMRIAKEEIFGPVQQIMKFKSLDEVIKRANNTFYGLAAGVFTKDLDKAVTVSAALQAGTVWVNCYMANSVQCPFGGFKMSGNGRELGEYGLHEYTEVKTVTM 233          
BLAST of CF832912 vs. ExPASy Swiss-Prot
Match: ALD1_STAS1 (Putative aldehyde dehydrogenase SSP0762 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP0762 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.710e-18
Identity = 44/108 (40.74%), Postives = 71/108 (65.74%), Query Frame = 3
Query:    9 SVLSNVKSEMLVST*EVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 332
            ++ +NV + M ++  E+FGPV  ++ +   +EAI +ANDT  GLA Y++ ++     +V+ ++E G V +NE     ++ PFGG KQSGLGRE   YG++EFLE+K +
Sbjct:  364 TIFNNVDNSMTIAQEEIFGPVMSVITYNDLDEAIKIANDTKYGLAGYVYGSDKDTLHKVARSIEAGTVEINEAGRKPDL-PFGGYKQSGLGREWGDYGIEEFLEVKSI 470          
BLAST of CF832912 vs. ExPASy Swiss-Prot
Match: YLX7_SCHPO (Putative aldehyde dehydrogenase-like protein C922.07c OS=Schizosaccharomyces pombe GN=SPAC922.07c PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.845e-18
Identity = 48/115 (41.74%), Postives = 70/115 (60.87%), Query Frame = 3
Query:    9 SVLSNVKSEMLVST*EVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCLGDMNR 353
            ++ ++    M +   E+FGPV  +  FKTE+EAI  AN+T  GLAA  FT +L+R  RVS+ LE G+V +N    S   APFGG+K SG+G E    G++ + +IK V +   N+
Sbjct:  381 TIFADCSENMTIVKEEIFGPVVAISKFKTEDEAIEKANNTTYGLAAMCFTKDLERAHRVSDELEAGMVFINSTENSDIQAPFGGIKMSGIGNELGSNGIEMYTQIKAVHINFNNK 495          
BLAST of CF832912 vs. ExPASy Swiss-Prot
Match: YF19_SCHPO (Putative aldehyde dehydrogenase-like protein C9E9.09c OS=Schizosaccharomyces pombe GN=SPAC9E9.09c PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.845e-18
Identity = 49/108 (45.37%), Postives = 66/108 (61.11%), Query Frame = 3
Query:    9 SVLSNVKSEMLVST*EVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 332
            ++LSNV  +M V   E+FGPV  ++ FKT EEAI   N++  GLAA + TNN+    +VS ALE G V VN   +     PFGG K+SG+GRE   YG+  + + K V
Sbjct:  386 TILSNVTEDMAVGKEEIFGPVLAVIKFKTIEEAIRRGNNSTYGLAAGVHTNNITNAIKVSNALEAGTVWVNCYNLLHHQIPFGGYKESGIGRELGSYGLTNYTQTKAV 493          
The following BLAST results are available for this feature:
BLAST of CF832912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 317
Match NameE-valueIdentityDescription
LADH_METM52.175e-1839.82Lactaldehyde dehydrogenase OS=Methanococcus maripa... [more]
BADH_SPIOL2.175e-1843.52Betaine aldehyde dehydrogenase, chloroplastic OS=S... [more]
AL1A1_RAT2.175e-1844.55Retinal dehydrogenase 1 OS=Rattus norvegicus GN=Al... [more]
BADH_ORYSJ2.840e-1841.67Betaine aldehyde dehydrogenase OS=Oryza sativa sub... [more]
BADH1_ARATH2.840e-1841.23Betaine aldehyde dehydrogenase 1, chloroplastic OS... [more]
AL1A3_HUMAN2.840e-1844.83Aldehyde dehydrogenase family 1 member A3 OS=Homo ... [more]
ALDH2_MACPR3.710e-1844.55Aldehyde dehydrogenase, cytosolic 2 (Fragment) OS=... [more]
ALD1_STAS13.710e-1840.74Putative aldehyde dehydrogenase SSP0762 OS=Staphyl... [more]
YLX7_SCHPO4.845e-1841.74Putative aldehyde dehydrogenase-like protein C922.... [more]
YF19_SCHPO4.845e-1845.37Putative aldehyde dehydrogenase-like protein C9E9.... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_02K13_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02K13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832912 ID=CF832912; Name=CF832912; organism=Citrus sinensis; type=EST; length=658bp
TTATAGCCTCAGTCCTTAGCAATGTCAAGAGTGAGATGCTTGTTTCGACA
TAGGAAGTATTCGGACCTGTGGCCCCACTTCTATGCTTCAAAACTGAGGA
GGAAGCTATCCATATGGCCAATGATACCAATGCAGGGTTAGCTGCTTATA
TATTTACAAACAATCTTCAACGTACATGGCGTGTCTCTGAAGCTCTAGAA
TATGGACTCGTTGGTGTTAATGAAGGATTAATTTCAACAGAGGTGGCTCC
TTTTGGTGGTGTTAAACAATCTGGTCTTGGACGGGAAGGTTCAAAGTATG
GGATGGATGAATTCCTGGAAATAAAATATGTGTGCTTGGGAGACATGAAC
AGAAAATGATGGGCCAGTTTTGTACCTGTATGTTACCGGGCTTATGGAGA
AGAAGGAAGGAGCCTTTAGTACTGCCTTTGAACTGTATTTTGAAGACGGA
TTGGAATAGTGTGAGCCTCAAGCGTTTGATGTGGAGGTAGTAGTGAGCCA
TAGTTGGTTTGCTATTGATACCCCATGTACATAAATAAGTTTGCAAAATG
GAACTTGAATGTCTAGTAGTGAGCCATAGGTGGTTTGCTATTGATACCCC
ATGTACATAAATAAGTTTGCAAAATGGAACTTGAATGTCTGGTGTCAAAA
AAAAAAAA
back to top