CF832912

Overview
NameCF832912
Unique NameCF832912
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length658
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832912 vs. ExPASy Swiss-Prot
Match: AL1A2_RAT (Retinal dehydrogenase 2 OS=Rattus norvegicus GN=Aldh1a2 PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.140e-17
Identity = 45/108 (41.67%), Postives = 68/108 (62.96%), Query Frame = 3
Query:    9 SVLSNVKSEMLVST*EVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 332
            +V SNV  +M ++  E+FGPV  +L FKT +E I  AN+++ GL A +FTN++ +   VS A++ G V +N        +PFGG K SG GRE  ++G+ E+ E+K V
Sbjct:  402 TVFSNVTDDMRIAKEEIFGPVQEILRFKTMDEVIERANNSDFGLVAAVFTNDINKALMVSSAMQAGTVWINCYNALNAQSPFGGFKMSGNGREMGEFGLREYSEVKTV 509          
BLAST of CF832912 vs. ExPASy Swiss-Prot
Match: AL1A2_MOUSE (Retinal dehydrogenase 2 OS=Mus musculus GN=Aldh1a2 PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.140e-17
Identity = 45/108 (41.67%), Postives = 68/108 (62.96%), Query Frame = 3
Query:    9 SVLSNVKSEMLVST*EVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 332
            +V SNV  +M ++  E+FGPV  +L FKT +E I  AN+++ GL A +FTN++ +   VS A++ G V +N        +PFGG K SG GRE  ++G+ E+ E+K V
Sbjct:  402 TVFSNVTDDMRIAKEEIFGPVQEILRFKTMDEVIERANNSDFGLVAAVFTNDINKALMVSSAMQAGTVWINCYNALNAQSPFGGFKMSGNGREMGEFGLREYSEVKTV 509          
BLAST of CF832912 vs. ExPASy Swiss-Prot
Match: AL1A2_HUMAN (Retinal dehydrogenase 2 OS=Homo sapiens GN=ALDH1A2 PE=1 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 3.140e-17
Identity = 45/108 (41.67%), Postives = 68/108 (62.96%), Query Frame = 3
Query:    9 SVLSNVKSEMLVST*EVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 332
            +V SNV  +M ++  E+FGPV  +L FKT +E I  AN+++ GL A +FTN++ +   VS A++ G V +N        +PFGG K SG GRE  ++G+ E+ E+K V
Sbjct:  402 TVFSNVTDDMRIAKEEIFGPVQEILRFKTMDEVIERANNSDFGLVAAVFTNDINKALTVSSAMQAGTVWINCYNALNAQSPFGGFKMSGNGREMGEFGLREYSEVKTV 509          
BLAST of CF832912 vs. ExPASy Swiss-Prot
Match: AL1A1_CHICK (Retinal dehydrogenase 1 OS=Gallus gallus GN=ALDH1A1 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.140e-17
Identity = 46/110 (41.82%), Postives = 67/110 (60.91%), Query Frame = 3
Query:    9 SVLSNVKSEMLVST*EVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCL 338
            +V SNV  +M ++  E+FGPV  ++ FKT +E I  AN+T  GLAA +FT ++ +    + AL+ G V VN     +   PFGG K SG GRE  +YG+ E+ E+K V +
Sbjct:  393 TVFSNVTDDMRIAKEEIFGPVQQIMKFKTIDEVIKRANNTTYGLAAAVFTKDIDKALTFASALQAGTVWVNCYSAFSAQCPFGGFKMSGNGRELGEYGLQEYTEVKTVTI 502          
BLAST of CF832912 vs. ExPASy Swiss-Prot
Match: BETB_BACSU (Betaine aldehyde dehydrogenase OS=Bacillus subtilis GN=gbsA PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.102e-17
Identity = 45/108 (41.67%), Postives = 68/108 (62.96%), Query Frame = 3
Query:    9 SVLSNVKSEMLVST*EVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 332
            ++ SN  S+M +   EVFGPV  +  F +EEE I +ANDT  GLA  +++ ++++  RV+  L  G V +N+       AP+GG KQSG GRE  K G++E+ E+K+V
Sbjct:  369 TIFSNCNSDMRIVQEEVFGPVLTVETFSSEEEVIELANDTIYGLAGAVWSKDIEKCERVAARLRMGTVWINDFHPYFAQAPWGGYKQSGFGRELGKIGLEEYTEVKHV 476          
BLAST of CF832912 vs. ExPASy Swiss-Prot
Match: ALDH1_ELEED (Aldehyde dehydrogenase, cytosolic 1 OS=Elephantulus edwardii GN=ALDH1 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.102e-17
Identity = 47/110 (42.73%), Postives = 69/110 (62.73%), Query Frame = 3
Query:    9 SVLSNVKSEMLVST*EVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCL 338
            +V SNV  +M ++  E+FGPV  ++ FK+ +E I  AN+T  GL A +FT +L +   VS AL+ G V VN  L ++  +P GG K SG GRE  +YG+ E+ E+K V +
Sbjct:  385 TVFSNVTDDMRIAKEEIFGPVQQIMKFKSLDEVIKRANNTYYGLVAGVFTKDLDKAVTVSSALQAGTVWVNCYLAASAQSPAGGFKMSGHGREMGEYGIHEYTEVKTVTM 494          
BLAST of CF832912 vs. ExPASy Swiss-Prot
Match: BETB_RHOSK (Betaine aldehyde dehydrogenase OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=betB PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.357e-17
Identity = 48/111 (43.24%), Postives = 70/111 (63.06%), Query Frame = 3
Query:    9 SVLSNVKSEMLVST*EVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCLG 341
            +V ++V   M ++  EVFGPV  +L F+TEEEAI  AN T+ GLAA +FT +L R  RV   L+ G   +N   ++   APFGGVK SG+GRE  +  ++ + ++K V +G
Sbjct:  365 TVFADVTDAMTLACEEVFGPVMAVLDFETEEEAIARANATDFGLAAGVFTADLTRAHRVVAQLQAGTCWINAYNLTPVEAPFGGVKLSGVGRENGRAAVEHYTQVKSVYVG 475          
BLAST of CF832912 vs. ExPASy Swiss-Prot
Match: BETB_RHOS1 (Betaine aldehyde dehydrogenase OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=betB PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.357e-17
Identity = 48/111 (43.24%), Postives = 70/111 (63.06%), Query Frame = 3
Query:    9 SVLSNVKSEMLVST*EVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCLG 341
            +V ++V   M ++  EVFGPV  +L F+TEEEAI  AN T+ GLAA +FT +L R  RV   L+ G   +N   ++   APFGGVK SG+GRE  +  ++ + ++K V +G
Sbjct:  365 TVFADVTDAMTLAREEVFGPVMAVLDFETEEEAIARANATDFGLAAGVFTADLTRAHRVVAQLQAGTCWINAYNLTPVEAPFGGVKLSGVGRENGRAAVEHYTQVKSVYVG 475          
BLAST of CF832912 vs. ExPASy Swiss-Prot
Match: ALDH1_MACPR (Aldehyde dehydrogenase, cytosolic 1 OS=Macroscelides proboscideus GN=ALDH1 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.357e-17
Identity = 46/110 (41.82%), Postives = 69/110 (62.73%), Query Frame = 3
Query:    9 SVLSNVKSEMLVST*EVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCL 338
            ++ SNV  +M ++  E+FGPV  ++ FK+ +E I  AN+T  GL A +FT +L +   VS AL+ G V VN  L ++  +P GG K SG GRE  +YG+ E+ E+K V +
Sbjct:  385 TIFSNVTDDMRIAKEEIFGPVQQIMKFKSLDEVIKRANNTYYGLVAGVFTKDLDKAVTVSSALQAGTVWVNCYLAASAQSPAGGFKMSGHGREMGEYGIHEYTEVKTVTM 494          
BLAST of CF832912 vs. ExPASy Swiss-Prot
Match: ALDH2_MOUSE (Aldehyde dehydrogenase, mitochondrial OS=Mus musculus GN=Aldh2 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.996e-17
Identity = 46/108 (42.59%), Postives = 67/108 (62.04%), Query Frame = 3
Query:    9 SVLSNVKSEMLVST*EVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 332
            +V  +VK  M ++  E+FGPV  +L FKT EE +  AND+  GLAA +FT +L +   +S+AL+ G V +N   +    +PFGG K SG GRE  +YG+  + E+K V
Sbjct:  403 TVFGDVKDGMTIAKEEIFGPVMQILKFKTIEEVVGRANDSKYGLAAAVFTKDLDKANYLSQALQAGTVWINCYDVFGAQSPFGGYKMSGSGRELGEYGLQAYTEVKTV 510          
The following BLAST results are available for this feature:
BLAST of CF832912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 317
Match NameE-valueIdentityDescription
AL1A2_RAT3.140e-1741.67Retinal dehydrogenase 2 OS=Rattus norvegicus GN=Al... [more]
AL1A2_MOUSE3.140e-1741.67Retinal dehydrogenase 2 OS=Mus musculus GN=Aldh1a2... [more]
AL1A2_HUMAN3.140e-1741.67Retinal dehydrogenase 2 OS=Homo sapiens GN=ALDH1A2... [more]
AL1A1_CHICK3.140e-1741.82Retinal dehydrogenase 1 OS=Gallus gallus GN=ALDH1A... [more]
BETB_BACSU4.102e-1741.67Betaine aldehyde dehydrogenase OS=Bacillus subtili... [more]
ALDH1_ELEED4.102e-1742.73Aldehyde dehydrogenase, cytosolic 1 OS=Elephantulu... [more]
BETB_RHOSK5.357e-1743.24Betaine aldehyde dehydrogenase OS=Rhodobacter spha... [more]
BETB_RHOS15.357e-1743.24Betaine aldehyde dehydrogenase OS=Rhodobacter spha... [more]
ALDH1_MACPR5.357e-1741.82Aldehyde dehydrogenase, cytosolic 1 OS=Macroscelid... [more]
ALDH2_MOUSE6.996e-1742.59Aldehyde dehydrogenase, mitochondrial OS=Mus muscu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_02K13_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02K13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832912 ID=CF832912; Name=CF832912; organism=Citrus sinensis; type=EST; length=658bp
TTATAGCCTCAGTCCTTAGCAATGTCAAGAGTGAGATGCTTGTTTCGACA
TAGGAAGTATTCGGACCTGTGGCCCCACTTCTATGCTTCAAAACTGAGGA
GGAAGCTATCCATATGGCCAATGATACCAATGCAGGGTTAGCTGCTTATA
TATTTACAAACAATCTTCAACGTACATGGCGTGTCTCTGAAGCTCTAGAA
TATGGACTCGTTGGTGTTAATGAAGGATTAATTTCAACAGAGGTGGCTCC
TTTTGGTGGTGTTAAACAATCTGGTCTTGGACGGGAAGGTTCAAAGTATG
GGATGGATGAATTCCTGGAAATAAAATATGTGTGCTTGGGAGACATGAAC
AGAAAATGATGGGCCAGTTTTGTACCTGTATGTTACCGGGCTTATGGAGA
AGAAGGAAGGAGCCTTTAGTACTGCCTTTGAACTGTATTTTGAAGACGGA
TTGGAATAGTGTGAGCCTCAAGCGTTTGATGTGGAGGTAGTAGTGAGCCA
TAGTTGGTTTGCTATTGATACCCCATGTACATAAATAAGTTTGCAAAATG
GAACTTGAATGTCTAGTAGTGAGCCATAGGTGGTTTGCTATTGATACCCC
ATGTACATAAATAAGTTTGCAAAATGGAACTTGAATGTCTGGTGTCAAAA
AAAAAAAA
back to top