CF832912

Overview
NameCF832912
Unique NameCF832912
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length658
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832912 vs. ExPASy Swiss-Prot
Match: AL1A1_HUMAN (Retinal dehydrogenase 1 OS=Homo sapiens GN=ALDH1A1 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.193e-16
Identity = 47/109 (43.12%), Postives = 70/109 (64.22%), Query Frame = 3
Query:    9 SVLSNVKSEMLVST*EVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVN-EGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 332
            +V SNV  EM ++  E+FGPV  ++ FK+ ++ I  AN+T  GL+A +FT ++ +   +S AL+ G V VN  G++S +  PFGG K SG GRE  +YG  E+ E+K V
Sbjct:  385 TVFSNVTDEMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTFYGLSAGVFTKDIDKAITISSALQAGTVWVNCYGVVSAQ-CPFGGFKMSGNGRELGEYGFHEYTEVKTV 492          
BLAST of CF832912 vs. ExPASy Swiss-Prot
Match: BADH_AMAHP (Betaine aldehyde dehydrogenase, chloroplastic OS=Amaranthus hypochondriacus GN=BADH4 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.559e-16
Identity = 46/108 (42.59%), Postives = 68/108 (62.96%), Query Frame = 3
Query:    9 SVLSNVKSEMLVST*EVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 332
            +++S+V + M +   EVFGPV     F +E+EAI +ANDT  GL A + + +L R  R+++ALE G V VN        AP+GG K+SG GRE  ++G++ +L IK V
Sbjct:  378 TIISDVSTSMQIWREEVFGPVLCQKTFGSEDEAIELANDTQYGLGAAVLSKDLDRCERITKALEVGAVWVNCSQPCFTQAPWGGTKRSGFGRELGEWGIENYLNIKQV 485          
BLAST of CF832912 vs. ExPASy Swiss-Prot
Match: AL1A1_HORSE (Retinal dehydrogenase 1 OS=Equus caballus GN=ALDH1A1 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.559e-16
Identity = 49/109 (44.95%), Postives = 68/109 (62.39%), Query Frame = 3
Query:    9 SVLSNVKSEMLVST*EVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVN-EGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 332
            +V SNV  EM ++  E+FGPV  ++ FK+ ++ I  AN+T  GL A  FT +L +   VS AL+ G V VN  G++S +  PFGG K SG GRE  +YG  E+ E+K V
Sbjct:  384 TVFSNVSDEMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTTYGLFAGSFTKDLDKAITVSAALQAGTVWVNCYGVVSAQ-CPFGGFKMSGNGREMGEYGFHEYTEVKTV 491          
BLAST of CF832912 vs. ExPASy Swiss-Prot
Match: ALDH2_MESAU (Aldehyde dehydrogenase, mitochondrial OS=Mesocricetus auratus GN=ALDH2 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.036e-16
Identity = 45/110 (40.91%), Postives = 68/110 (61.82%), Query Frame = 3
Query:    9 SVLSNVKSEMLVST*EVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCL 338
            +V  +VK  M ++  E+FGPV  +L FKT EE +  AN++  GLAA +FT +L +   +S+AL+ G V +N   +    +PFGG K SG GRE  +YG+  + E+K V +
Sbjct:  384 TVFGDVKDGMTIAKEEIFGPVMQILKFKTIEEVVGRANNSKYGLAAAVFTKDLDKANYLSQALQAGTVWINCYDVFGAQSPFGGYKMSGSGRELGEYGLQAYTEVKTVTI 493          
BLAST of CF832912 vs. ExPASy Swiss-Prot
Match: AL1B1_PONAB (Aldehyde dehydrogenase X, mitochondrial OS=Pongo abelii GN=ALDH1B1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.036e-16
Identity = 47/110 (42.73%), Postives = 65/110 (59.09%), Query Frame = 3
Query:    9 SVLSNVKSEMLVST*EVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCL 338
            +V   V+ +M ++  E+FGPV PL  FK  EE I  AN T  GLAA +FT +L +    ++AL+ G V VN   I T   PFGG K+SG GRE  + G+  + E+K V +
Sbjct:  401 TVFGGVQDDMRIAKEEIFGPVQPLFKFKKMEEVIERANTTRYGLAAAVFTRDLDKAMYFTQALQAGTVWVNTYNIVTCHTPFGGFKESGNGRELGEDGLKAYTEVKTVTI 510          
BLAST of CF832912 vs. ExPASy Swiss-Prot
Match: AL1B1_HUMAN (Aldehyde dehydrogenase X, mitochondrial OS=Homo sapiens GN=ALDH1B1 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.036e-16
Identity = 46/110 (41.82%), Postives = 66/110 (60.00%), Query Frame = 3
Query:    9 SVLSNVKSEMLVST*EVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCL 338
            +V   V+ +M ++  E+FGPV PL  FK  EE +  AN+T  GLAA +FT +L +    ++AL+ G V VN   I T   PFGG K+SG GRE  + G+  + E+K V +
Sbjct:  401 TVFGGVQDDMRIAKEEIFGPVQPLFKFKKIEEVVERANNTRYGLAAAVFTRDLDKAMYFTQALQAGTVWVNTYNIVTCHTPFGGFKESGNGRELGEDGLKAYTEVKTVTI 510          
BLAST of CF832912 vs. ExPASy Swiss-Prot
Match: NAHF_PSEU8 (Salicylaldehyde dehydrogenase OS=Pseudomonas sp. (strain C18) GN=doxF PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.659e-16
Identity = 43/112 (38.39%), Postives = 70/112 (62.50%), Query Frame = 3
Query:    6 ASVLSNVKSEMLVST*EVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEV-APFGGVKQSGLGREGSKYGMDEFLEIKYVCL 338
            A++L +VKS+M +   E FGP+  ++  K E EA+ +AND+  GL++ +F  ++ R  RV  ++EYG V +N   +  E  AP+GG K +G GR   +  +DEF EIK++ +
Sbjct:  363 ATILDHVKSDMRIYDEETFGPITVVIRCKGEAEAVRIANDSVYGLSSGVFGRDINRALRVGMSIEYGSVHINGSTVQNEAQAPYGGTKNTGYGRFDGRAVIDEFTEIKWLTI 474          
BLAST of CF832912 vs. ExPASy Swiss-Prot
Match: NAHF_PSEPU (Salicylaldehyde dehydrogenase OS=Pseudomonas putida GN=nahF PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.659e-16
Identity = 43/112 (38.39%), Postives = 70/112 (62.50%), Query Frame = 3
Query:    6 ASVLSNVKSEMLVST*EVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEV-APFGGVKQSGLGREGSKYGMDEFLEIKYVCL 338
            A++L +VKS+M +   E FGP+  ++  K E EA+ +AND+  GL++ +F  ++ R  RV  ++EYG V +N   +  E  AP+GG K +G GR   +  +DEF EIK++ +
Sbjct:  363 ATILDHVKSDMRIYDEETFGPITVVIRCKGEAEAVRIANDSVYGLSSGVFGRDINRALRVGMSIEYGSVHINGSTVQNEAQAPYGGTKNTGYGRFDGRAVIDEFTEIKWLTI 474          
BLAST of CF832912 vs. ExPASy Swiss-Prot
Match: ALDH2_RAT (Aldehyde dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Aldh2 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.659e-16
Identity = 45/108 (41.67%), Postives = 67/108 (62.04%), Query Frame = 3
Query:    9 SVLSNVKSEMLVST*EVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 332
            +V  +VK  M ++  E+FGPV  +L FKT EE +  AN++  GLAA +FT +L +   +S+AL+ G V +N   +    +PFGG K SG GRE  +YG+  + E+K V
Sbjct:  403 TVFGDVKDGMTIAKEEIFGPVMQILKFKTIEEVVGRANNSKYGLAAAVFTKDLDKANYLSQALQAGTVWINCYDVFGAQSPFGGYKMSGSGRELGEYGLQAYTEVKTV 510          
BLAST of CF832912 vs. ExPASy Swiss-Prot
Match: BADH_GADCA (Betaine aldehyde dehydrogenase OS=Gadus callarias GN=aldh9A1 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.535e-16
Identity = 47/115 (40.87%), Postives = 67/115 (58.26%), Query Frame = 3
Query:   12 VLSNVKSEMLVST*EVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVC--LGDMN 350
            VL N + +M     E+FGPV  +L F TEEE +  AN+T  GLA+ +FT ++ R  RV+  LE G   +N   IS    PFGG K SG GRE  +  +D + ++K V   +GD++
Sbjct:  386 VLDNCRDDMTCVKEEIFGPVMSVLPFDTEEEVLQRANNTTFGLASGVFTRDISRAHRVAANLEAGTCYINTYSISPVEVPFGGYKMSGFGRENGQATVDYYSQLKTVIVEMGDVD 500          
The following BLAST results are available for this feature:
BLAST of CF832912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 317
Match NameE-valueIdentityDescription
AL1A1_HUMAN1.193e-1643.12Retinal dehydrogenase 1 OS=Homo sapiens GN=ALDH1A1... [more]
BADH_AMAHP1.559e-1642.59Betaine aldehyde dehydrogenase, chloroplastic OS=A... [more]
AL1A1_HORSE1.559e-1644.95Retinal dehydrogenase 1 OS=Equus caballus GN=ALDH1... [more]
ALDH2_MESAU2.036e-1640.91Aldehyde dehydrogenase, mitochondrial OS=Mesocrice... [more]
AL1B1_PONAB2.036e-1642.73Aldehyde dehydrogenase X, mitochondrial OS=Pongo a... [more]
AL1B1_HUMAN2.036e-1641.82Aldehyde dehydrogenase X, mitochondrial OS=Homo sa... [more]
NAHF_PSEU82.659e-1638.39Salicylaldehyde dehydrogenase OS=Pseudomonas sp. (... [more]
NAHF_PSEPU2.659e-1638.39Salicylaldehyde dehydrogenase OS=Pseudomonas putid... [more]
ALDH2_RAT2.659e-1641.67Aldehyde dehydrogenase, mitochondrial OS=Rattus no... [more]
BADH_GADCA4.535e-1640.87Betaine aldehyde dehydrogenase OS=Gadus callarias ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_02K13_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02K13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832912 ID=CF832912; Name=CF832912; organism=Citrus sinensis; type=EST; length=658bp
TTATAGCCTCAGTCCTTAGCAATGTCAAGAGTGAGATGCTTGTTTCGACA
TAGGAAGTATTCGGACCTGTGGCCCCACTTCTATGCTTCAAAACTGAGGA
GGAAGCTATCCATATGGCCAATGATACCAATGCAGGGTTAGCTGCTTATA
TATTTACAAACAATCTTCAACGTACATGGCGTGTCTCTGAAGCTCTAGAA
TATGGACTCGTTGGTGTTAATGAAGGATTAATTTCAACAGAGGTGGCTCC
TTTTGGTGGTGTTAAACAATCTGGTCTTGGACGGGAAGGTTCAAAGTATG
GGATGGATGAATTCCTGGAAATAAAATATGTGTGCTTGGGAGACATGAAC
AGAAAATGATGGGCCAGTTTTGTACCTGTATGTTACCGGGCTTATGGAGA
AGAAGGAAGGAGCCTTTAGTACTGCCTTTGAACTGTATTTTGAAGACGGA
TTGGAATAGTGTGAGCCTCAAGCGTTTGATGTGGAGGTAGTAGTGAGCCA
TAGTTGGTTTGCTATTGATACCCCATGTACATAAATAAGTTTGCAAAATG
GAACTTGAATGTCTAGTAGTGAGCCATAGGTGGTTTGCTATTGATACCCC
ATGTACATAAATAAGTTTGCAAAATGGAACTTGAATGTCTGGTGTCAAAA
AAAAAAAA
back to top