CF832913

Overview
NameCF832913
Unique NameCF832913
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: SSDH_MOUSE (Succinate-semialdehyde dehydrogenase, mitochondrial OS=Mus musculus GN=Aldh5a1 PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.065e-36
Identity = 71/117 (60.68%), Postives = 90/117 (76.92%), Query Frame = -1
Query:  313 FYEPTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCLGDM 663
            F+EPT+LSNV  +ML   EE FGP+AP++ F  EEEA+ +AN    GLA Y ++ +  + WRV+E LE G+VGVNEGLIS+   PFGGVKQSGLGREGSKYG+DE+LE+KYVC G +
Sbjct:  407 FFEPTLLSNVTRDMLCITEETFGPLAPVIKFDKEEEAVAIANAAEVGLAGYFYSQDPAQIWRVAEQLEVGMVGVNEGLISSVECPFGGVKQSGLGREGSKYGIDEYLEVKYVCYGGL 523          
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: GABD_RHISN (Probable succinate-semialdehyde dehydrogenase [NADP+] OS=Rhizobium sp. (strain NGR234) GN=gabD PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 8.917e-36
Identity = 65/117 (55.56%), Postives = 94/117 (80.34%), Query Frame = -1
Query:  313 FYEPTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCLGDM 663
            F+EPTV+++V   M ++ EE FGP+APLL F   +  +  ANDT  GLAAY + +NL+R WRV+EALEYG+VG+N G +S+E APFGGVKQSG+GREGS++G++++L++KY+C+G +
Sbjct:  375 FFEPTVVTDVSKTMRLAEEETFGPLAPLLRFDDADHVVREANDTIYGLAAYFYASNLKRVWRVAEALEYGMVGINTGRMSSEAAPFGGVKQSGIGREGSRHGLEDYLDMKYLCVGGL 491          
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: SSDH1_SCHPO (Putative succinate-semialdehyde dehydrogenase C1002.12c [NADP+] OS=Schizosaccharomyces pombe GN=SPAC1002.12c PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.064e-31
Identity = 61/117 (52.14%), Postives = 85/117 (72.65%), Query Frame = -1
Query:  313 FYEPTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCLGDM 663
            ++EPTV+ N K  ML+S EE FGPV  L  F TE+E +  AND+  GLA Y+F+ ++ R +RV EAL+ G+VG N GL+S  ++PFGGVK+SG GREGSKYG+ E+L+IK + +  +
Sbjct:  382 YFEPTVIINAKQGMLISEEETFGPVGALFKFDTEDEVVAWANDSPVGLAGYLFSKDISRVFRVGEALQVGMVGCNTGLVSDVLSPFGGVKESGFGREGSKYGISEYLDIKSLTISTL 498          
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: UGA2_YEAST (Succinate-semialdehyde dehydrogenase [NADP+] OS=Saccharomyces cerevisiae GN=UGA2 PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 3.072e-28
Identity = 58/117 (49.57%), Postives = 81/117 (69.23%), Query Frame = -1
Query:  313 FYEPTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCLGDM 663
            FY P +LS+V S  +VS+EE FGP+ P+  F T EE +  ANDT  GLAAY+F+ N+   + VSEALE G+V  N G+ S    PFGGVK+SG GREGS YG++++  +K + +G++
Sbjct:  377 FYAPVILSHVPSTAIVSKEETFGPLCPIFSFDTMEEVVGYANDTEFGLAAYVFSKNVNTLYTVSEALETGMVSCNTGVFSDCSIPFGGVKESGFGREGSLYGIEDYTVLKTITIGNL 493          
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: GABD_BACSU (Succinate-semialdehyde dehydrogenase [NADP+] OS=Bacillus subtilis GN=gabD PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.012e-28
Identity = 60/115 (52.17%), Postives = 81/115 (70.43%), Query Frame = -1
Query:  319 FYEPTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCLG 663
            F  PTVL++V + M +  EE FGPVAP++ F   +EAI +ANDT  GLAAY FT N +R   +SE LEYG++G N+G  S   APFGG+K+SG+GREG   G++ +LE KY+ +G
Sbjct:  347 FVNPTVLTDVDTSMNIMHEETFGPVAPIVTFSDIDEAIQLANDTPYGLAAYFFTENYRRGIYISENLEYGIIGWNDGGPSAVQAPFGGMKESGIGREGGSEGIEPYLETKYLSIG 461          
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: SSDH2_SCHPO (Putative succinate-semialdehyde dehydrogenase C139.05 [NADP+] OS=Schizosaccharomyces pombe GN=SPAC139.05 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.082e-25
Identity = 55/114 (48.25%), Postives = 74/114 (64.91%), Query Frame = -1
Query:  322 FYEPTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCL 663
            F+EPTVLS V  +MLV+ EE FGP+A +  F   EE I  AND++ GLA Y+FTNNL     V++ LE GLVG N  ++      FGG+KQSG G+E  + G+ EF+ +K + L
Sbjct:  377 FFEPTVLSGVTQDMLVASEETFGPLASVFKFDDTEEVIEWANDSDVGLAGYVFTNNLSTMIHVAKELEVGLVGANIEMVDEPFISFGGIKQSGFGKEAGRLGVQEFMVVKEINL 490          
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: BADH_ORYSJ (Betaine aldehyde dehydrogenase OS=Oryza sativa subsp. japonica GN=Os04g0464200 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.929e-22
Identity = 51/112 (45.54%), Postives = 78/112 (69.64%), Query Frame = -1
Query:  328 FYEPTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 663
            F EPT+++NV + M + REEVFGPV  +  F+TE EA+ +ANDT+ GLA  + +N+L+R  R+S+A++ G+V +N        AP+GG K+SG GRE  ++G+D +L +K V
Sbjct:  376 FIEPTIITNVSTSMQIWREEVFGPVICVKEFRTEREAVELANDTHYGLAGAVISNDLERCERISKAIQSGIVWINCSQPCFVQAPWGGNKRSGFGRELGQWGLDNYLSVKQV 487          
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: BADH_ATRHO (Betaine aldehyde dehydrogenase, chloroplastic OS=Atriplex hortensis PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.929e-22
Identity = 55/122 (45.08%), Postives = 83/122 (68.03%), Query Frame = -1
Query:  298 FYEPTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCLGDMNRK*W 663
            + EPT+++++ + M + +EEVFGPV  +  FKTE+EAI +ANDT  GLA  +F+ +L+R  RV++ALE G V VN        AP+GGVK+SG GRE  ++G++ +L IK V   D++ + W
Sbjct:  376 YIEPTIITDITTSMQIWKEEVFGPVICVKTFKTEDEAIELANDTEYGLAGAVFSKDLERCERVTKALEVGAVWVNCSQPCFVHAPWGGVKRSGFGRELGEWGIENYLNIKQV-TSDISDEPW 496          
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: BADH1_ARATH (Betaine aldehyde dehydrogenase 1, chloroplastic OS=Arabidopsis thaliana GN=ALDH10A8 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.929e-22
Identity = 53/118 (44.92%), Postives = 79/118 (66.95%), Query Frame = -1
Query:  310 FYEPTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCLGDMN 663
            F EPT++++V + M + REEVFGPV  +  F +E+EAI +AND++ GL A + +N+ +R  R+SEA E G+V +N        AP+GGVK+SG GRE  ++G+D +L +K V L   N
Sbjct:  374 FIEPTIITDVTTSMQIWREEVFGPVLCVKTFASEDEAIELANDSHYGLGAAVISNDTERCDRISEAFEAGIVWINCSQPCFTQAPWGGVKRSGFGRELGEWGLDNYLSVKQVTLYTSN 491          
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: BADH_BETVU (Betaine aldehyde dehydrogenase, chloroplastic OS=Beta vulgaris PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.290e-22
Identity = 54/122 (44.26%), Postives = 82/122 (67.21%), Query Frame = -1
Query:  298 FYEPTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCLGDMNRK*W 663
            F EPT++S++ + M + REEVFGPV  +  F +E+EA+ +ANDT  GLA+ +F+ +L+R  RVS+ LE G V VN        AP+GG+K+SG GRE  ++G++ +L IK V   D++ + W
Sbjct:  374 FIEPTIISDISTSMQIWREEVFGPVLCVKTFSSEDEALELANDTEYGLASAVFSKDLERCERVSKLLESGAVWVNCSQPCFVHAPWGGIKRSGFGRELGEWGIENYLNIKQV-TSDISNEPW 494          
The following BLAST results are available for this feature:
BLAST of CF832913 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 370
Match NameE-valueIdentityDescription
SSDH_MOUSE3.065e-3660.68Succinate-semialdehyde dehydrogenase, mitochondria... [more]
GABD_RHISN8.917e-3655.56Probable succinate-semialdehyde dehydrogenase [NAD... [more]
SSDH1_SCHPO5.064e-3152.14Putative succinate-semialdehyde dehydrogenase C100... [more]
UGA2_YEAST3.072e-2849.57Succinate-semialdehyde dehydrogenase [NADP+] OS=Sa... [more]
GABD_BACSU4.012e-2852.17Succinate-semialdehyde dehydrogenase [NADP+] OS=Ba... [more]
SSDH2_SCHPO7.082e-2548.25Putative succinate-semialdehyde dehydrogenase C139... [more]
BADH_ORYSJ1.929e-2245.54Betaine aldehyde dehydrogenase OS=Oryza sativa sub... [more]
BADH_ATRHO1.929e-2245.08Betaine aldehyde dehydrogenase, chloroplastic OS=A... [more]
BADH1_ARATH1.929e-2244.92Betaine aldehyde dehydrogenase 1, chloroplastic OS... [more]
BADH_BETVU3.290e-2244.26Betaine aldehyde dehydrogenase, chloroplastic OS=B... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02K13_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02K13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832913 ID=CF832913; Name=CF832913; organism=Citrus sinensis; type=EST; length=663bp
TTTTTTTTTTTCTGACACCAGACATTCAAGTTCCATTTTGCAAACTTATT
TATGTACATGGGGTATCAATAGCAAACCACCTATGGCTCACTACTAGACA
TTCAAGTTCCATTTTGCAAACTTATTTATGTACATGGGGTATCAATAGCA
AACCAACTATGGCTCACTACTACCTCCACATCAAACGCTTGAGGCTCACA
CTATTCCAATCCGTCTTCAAAATACAGTTCAAAGGCAGTACTAAAGGCTC
CTTCCTTCTTCTCCATAAGCCCGGTAACATACAGGTACAAAACTGGCCCA
TCATTTTCTGTTCATGTCTCCCAAGCACACATATTTTATTTCCAGGAATT
CATCCATCCCATACTTTGAACCTTCCCGTCCAAGACCAGATTGTTTAACA
CCACCAAAAGGAGCCACCTCTGTTGAAATTAATCCTTCATTAACACCAAC
GAGTCCATATTCTAGAGCTTCAGAGACACGCCATGTACGTTGAAGATTGT
TTGTAAATATATAAGCAGCTAACCCTGCATTGGTATCATTGGCCATATGG
ATAGCTTCCTCCTCAGTTTTGAAGCATAGAAGTGGGGCCACAGGTCCGAA
TACTTCCTCTCTCGAAACAAGCATCTCACTCTTGACATTGCTAAGGACTG
TAGGCTCATAAAA
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