CF832913

Overview
NameCF832913
Unique NameCF832913
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: BETB_BURM9 (Betaine aldehyde dehydrogenase OS=Burkholderia mallei (strain NCTC 10229) GN=betB PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.430e-17
Identity = 48/112 (42.86%), Postives = 65/112 (58.04%), Query Frame = -1
Query:  328 FYEPTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 663
            +  PTV  + + +M + REE+FGPV  +L F+TE+EAI  AN T+ GLAA + T NL R  R    LE G+  +N    S    P GG KQSG+GRE     ++ +  IK V
Sbjct:  367 YVAPTVFGDCRDDMRIVREEIFGPVMSILSFETEDEAIARANATDYGLAAGVVTENLSRAHRAIHRLEAGICWINTWGESPAEMPVGGYKQSGVGRENGITTLEHYTRIKSV 478          
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: BETB_BURM7 (Betaine aldehyde dehydrogenase OS=Burkholderia mallei (strain NCTC 10247) GN=betB PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.430e-17
Identity = 48/112 (42.86%), Postives = 65/112 (58.04%), Query Frame = -1
Query:  328 FYEPTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 663
            +  PTV  + + +M + REE+FGPV  +L F+TE+EAI  AN T+ GLAA + T NL R  R    LE G+  +N    S    P GG KQSG+GRE     ++ +  IK V
Sbjct:  367 YVAPTVFGDCRDDMRIVREEIFGPVMSILSFETEDEAIARANATDYGLAAGVVTENLSRAHRAIHRLEAGICWINTWGESPAEMPVGGYKQSGVGRENGITTLEHYTRIKSV 478          
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: BETB_ECOSE (Betaine aldehyde dehydrogenase OS=Escherichia coli (strain SE11) GN=betB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.868e-17
Identity = 46/109 (42.20%), Postives = 65/109 (59.63%), Query Frame = -1
Query:  328 PTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 654
            PTV ++ + EM + REE+FGPV  LL +++E+E I  ANDT+ GLAA I T +L R  RV   LE G+  +N    S    P GG K SG+GRE     +  + ++K +
Sbjct:  371 PTVFTDCRDEMTIVREEIFGPVMSLLTYESEDEVIRRANDTDYGLAAGIVTADLNRAHRVIHQLEAGICWINTWGESPAEMPVGGYKHSGIGRENGVMTLQSYTQVKSI 479          
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: BETB_ECOLU (Betaine aldehyde dehydrogenase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=betB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.868e-17
Identity = 46/109 (42.20%), Postives = 65/109 (59.63%), Query Frame = -1
Query:  328 PTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 654
            PTV ++ + EM + REE+FGPV  LL +++E+E I  ANDT+ GLAA I T +L R  RV   LE G+  +N    S    P GG K SG+GRE     +  + ++K +
Sbjct:  371 PTVFTDCRDEMTIVREEIFGPVMSLLTYESEDEVIRRANDTDYGLAAGIVTADLNRAHRVIHQLEAGICWINTWGESPAEMPVGGYKHSGIGRENGVMTLQSYTQVKSI 479          
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: BETB_BRUMB (Betaine aldehyde dehydrogenase OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=betB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.868e-17
Identity = 49/120 (40.83%), Postives = 72/120 (60.00%), Query Frame = -1
Query:  310 FYEPTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIK--YVCLGDMN 663
            F EPTV ++V   M ++REE+FGPV  +L F  E+E I  AND+  GLAA +FT +L R   V   ++ G   +N   +++   PFGG KQSG+GRE     +  + +IK  YV +G ++
Sbjct:  365 FIEPTVFADVTDTMTIAREEIFGPVMSVLEFSDEDEVIARANDSEFGLAAGVFTADLSRGHHVIGQIKAGTCWINAYNLTSVEVPFGGYKQSGIGRENGIAALAHYSQIKTVYVEMGKVD 484          
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: BETB_ECOHS (Betaine aldehyde dehydrogenase OS=Escherichia coli O9:H4 (strain HS) GN=betB PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.440e-17
Identity = 45/109 (41.28%), Postives = 65/109 (59.63%), Query Frame = -1
Query:  328 PTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 654
            PTV ++ + +M + REE+FGPV  +L ++TE+E I  ANDT+ GLAA I T +L R  RV   LE G+  +N    S    P GG K SG+GRE     +  + ++K +
Sbjct:  371 PTVFTDCRDDMTIVREEIFGPVMSILTYETEDEVIRRANDTDYGLAAGIVTADLNRAHRVIHQLEAGICWINTWGESPAEMPVGGYKHSGIGRENGVMTLQSYTQVKSI 479          
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: BETB_ECO8A (Betaine aldehyde dehydrogenase OS=Escherichia coli O8 (strain IAI1) GN=betB PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.440e-17
Identity = 46/109 (42.20%), Postives = 64/109 (58.72%), Query Frame = -1
Query:  328 PTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 654
            PTV ++   EM + REE+FGPV  +L +++EEE I  ANDT+ GLAA I T +L R  RV   LE G+  +N    S    P GG K SG+GRE     +  + ++K +
Sbjct:  371 PTVFTDCSDEMTIVREEIFGPVMSILTYESEEEVIRRANDTDYGLAAGIVTADLNRAHRVIHQLEAGICWINTWGESPAEMPVGGYKHSGIGRENGVMTLQSYTQVKSI 479          
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: BETB_ECO24 (Betaine aldehyde dehydrogenase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=betB PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.440e-17
Identity = 46/109 (42.20%), Postives = 64/109 (58.72%), Query Frame = -1
Query:  328 PTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 654
            PTV ++   EM + REE+FGPV  +L +++EEE I  ANDT+ GLAA I T +L R  RV   LE G+  +N    S    P GG K SG+GRE     +  + ++K +
Sbjct:  371 PTVFTDCSDEMTIVREEIFGPVMSILTYESEEEVIRRANDTDYGLAAGIVTADLNRAHRVIHQLEAGICWINTWGESPAEMPVGGYKHSGIGRENGVMTLQSYTQVKSI 479          
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: BETB_BURVG (Betaine aldehyde dehydrogenase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=betB PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.440e-17
Identity = 47/112 (41.96%), Postives = 65/112 (58.04%), Query Frame = -1
Query:  328 FYEPTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 663
            +  PTV  + + +M + REE+FGPV  +L F++E+E I  ANDT+ GLAA + T NL R  R    LE G+  +N    S    P GG KQSG+GRE     ++ +  IK V
Sbjct:  367 YVAPTVFGDCRDDMKIVREEIFGPVMSILDFESEDEVIARANDTHYGLAAGVVTENLSRAHRTIHRLEAGICWINTWGESPAEMPVGGYKQSGVGRENGITTLEHYTRIKSV 478          
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: BETB_BURS3 (Betaine aldehyde dehydrogenase OS=Burkholderia sp. (strain 383) GN=betB PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.440e-17
Identity = 47/112 (41.96%), Postives = 65/112 (58.04%), Query Frame = -1
Query:  328 FYEPTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 663
            +  PTV  + + +M + REE+FGPV  +L F++E+E I  ANDT+ GLAA + T NL R  R    LE G+  +N    S    P GG KQSG+GRE     ++ +  IK V
Sbjct:  367 YVAPTVFGDCRDDMKIVREEIFGPVMSILDFESEDEVIARANDTHYGLAAGVVTENLSRAHRTIHRLEAGICWINTWGESPAEMPVGGYKQSGVGRENGITTLEHYTRIKSV 478          
The following BLAST results are available for this feature:
BLAST of CF832913 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 370
Match NameE-valueIdentityDescription
BETB_BURM91.430e-1742.86Betaine aldehyde dehydrogenase OS=Burkholderia mal... [more]
BETB_BURM71.430e-1742.86Betaine aldehyde dehydrogenase OS=Burkholderia mal... [more]
BETB_ECOSE1.868e-1742.20Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]
BETB_ECOLU1.868e-1742.20Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]
BETB_BRUMB1.868e-1740.83Betaine aldehyde dehydrogenase OS=Brucella meliten... [more]
BETB_ECOHS2.440e-1741.28Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]
BETB_ECO8A2.440e-1742.20Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]
BETB_ECO242.440e-1742.20Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]
BETB_BURVG2.440e-1741.96Betaine aldehyde dehydrogenase OS=Burkholderia vie... [more]
BETB_BURS32.440e-1741.96Betaine aldehyde dehydrogenase OS=Burkholderia sp.... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02K13_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02K13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832913 ID=CF832913; Name=CF832913; organism=Citrus sinensis; type=EST; length=663bp
TTTTTTTTTTTCTGACACCAGACATTCAAGTTCCATTTTGCAAACTTATT
TATGTACATGGGGTATCAATAGCAAACCACCTATGGCTCACTACTAGACA
TTCAAGTTCCATTTTGCAAACTTATTTATGTACATGGGGTATCAATAGCA
AACCAACTATGGCTCACTACTACCTCCACATCAAACGCTTGAGGCTCACA
CTATTCCAATCCGTCTTCAAAATACAGTTCAAAGGCAGTACTAAAGGCTC
CTTCCTTCTTCTCCATAAGCCCGGTAACATACAGGTACAAAACTGGCCCA
TCATTTTCTGTTCATGTCTCCCAAGCACACATATTTTATTTCCAGGAATT
CATCCATCCCATACTTTGAACCTTCCCGTCCAAGACCAGATTGTTTAACA
CCACCAAAAGGAGCCACCTCTGTTGAAATTAATCCTTCATTAACACCAAC
GAGTCCATATTCTAGAGCTTCAGAGACACGCCATGTACGTTGAAGATTGT
TTGTAAATATATAAGCAGCTAACCCTGCATTGGTATCATTGGCCATATGG
ATAGCTTCCTCCTCAGTTTTGAAGCATAGAAGTGGGGCCACAGGTCCGAA
TACTTCCTCTCTCGAAACAAGCATCTCACTCTTGACATTGCTAAGGACTG
TAGGCTCATAAAA
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