CF832913

Overview
NameCF832913
Unique NameCF832913
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: ALD1_STAS1 (Putative aldehyde dehydrogenase SSP0762 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP0762 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.637e-21
Identity = 48/112 (42.86%), Postives = 75/112 (66.96%), Query Frame = -1
Query:  328 FYEPTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 663
            F  PT+ +NV + M +++EE+FGPV  ++ +   +EAI +ANDT  GLA Y++ ++     +V+ ++E G V +NE     ++ PFGG KQSGLGRE   YG++EFLE+K +
Sbjct:  360 FARPTIFNNVDNSMTIAQEEIFGPVMSVITYNDLDEAIKIANDTKYGLAGYVYGSDKDTLHKVARSIEAGTVEINEAGRKPDL-PFGGYKQSGLGREWGDYGIEEFLEVKSI 470          
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: AL1B1_RAT (Aldehyde dehydrogenase X, mitochondrial OS=Rattus norvegicus GN=Aldh1b1 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.637e-21
Identity = 54/114 (47.37%), Postives = 72/114 (63.16%), Query Frame = -1
Query:  322 FYEPTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCL 663
            F +PTV  NV+ +M ++REE+FGPV PL  FK  EE I  AN+T  GLAA +FT +L +    S+AL+ G V VN   I T   PFGG K+SG GRE  + G+  + E+K V +
Sbjct:  399 FIKPTVFGNVQDDMRIAREEIFGPVQPLFKFKKIEEVIQRANNTRYGLAAAVFTRDLDKALYFSQALQAGTVWVNTYNIVTCHTPFGGFKESGNGRELGEDGLKAYTEVKTVTI 512          
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: AL1A1_MOUSE (Retinal dehydrogenase 1 OS=Mus musculus GN=Aldh1a1 PE=1 SV=5)

HSP 1 Score: 101.679 bits (252), Expect = 3.637e-21
Identity = 51/114 (44.74%), Postives = 76/114 (66.67%), Query Frame = -1
Query:  322 FYEPTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCL 663
            F +PTV SNV  EM +++EE+FGPV  ++ FK+ ++ I  AN+T  GLAA +FT +L +   VS AL+ G+V VN  ++ +   PFGG K SG GRE  ++G+ E+ E+K V +
Sbjct:  381 FVQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSVDDVIKRANNTTYGLAAGLFTKDLDKAITVSSALQAGVVWVNCYMMLSAQCPFGGFKMSGNGRELGEHGLYEYTELKTVAM 494          
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: ALD1_STAHJ (Putative aldehyde dehydrogenase SH0913 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=SH0913 PE=3 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 4.750e-21
Identity = 47/112 (41.96%), Postives = 75/112 (66.96%), Query Frame = -1
Query:  328 FYEPTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 663
            F  PT+  NV ++M +++EE+FGPVA ++ +   +EAI +ANDT  GLA Y+   + +   +V+ ++E G + +NE     ++ PFGG KQSG+GRE   YG++EFLE+K +
Sbjct:  360 FARPTIFINVDNDMTIAQEEIFGPVASVITYNNLDEAIKIANDTKYGLAGYVIGKDKETLQKVARSIEAGRIEINEAGNQPDL-PFGGYKQSGIGREWGDYGIEEFLEVKSI 470          
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: AL1A7_MOUSE (Aldehyde dehydrogenase, cytosolic 1 OS=Mus musculus GN=Aldh1a7 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.750e-21
Identity = 52/114 (45.61%), Postives = 74/114 (64.91%), Query Frame = -1
Query:  322 FYEPTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCL 663
            F +PTV SNV  EM +++EE+FGPV  ++ FK+ ++ I  AN+T  GLAA +FT +L +   VS AL+ G+V VN  L      PFGG K SG GRE  ++G+ E+ E+K V +
Sbjct:  381 FVQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSMDDVIKRANNTTYGLAAGVFTKDLDKAITVSSALQAGMVWVNCYLAVPVQCPFGGFKMSGNGRELGEHGLYEYTELKTVAM 494          
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: AL1A3_RAT (Aldehyde dehydrogenase family 1 member A3 OS=Rattus norvegicus GN=Aldh1a3 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.750e-21
Identity = 53/114 (46.49%), Postives = 71/114 (62.28%), Query Frame = -1
Query:  322 FYEPTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCL 663
            F +PTV S+V   M +++EE+FGPV P+L FK  EE I  AN T+ GL A +FT NL +  +++ ALE G V VN        APFGG K SG GRE  +Y + E+ E+K V +
Sbjct:  392 FIKPTVFSDVTDNMRIAKEEIFGPVQPILKFKNLEEVIKRANSTDYGLTAAVFTKNLDKALKLASALESGTVWVNCYNAFYAQAPFGGFKMSGNGRELGEYALAEYTEVKTVTI 505          
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: AL1A2_RAT (Retinal dehydrogenase 2 OS=Rattus norvegicus GN=Aldh1a2 PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 4.750e-21
Identity = 50/112 (44.64%), Postives = 73/112 (65.18%), Query Frame = -1
Query:  328 FYEPTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 663
            F EPTV SNV  +M +++EE+FGPV  +L FKT +E I  AN+++ GL A +FTN++ +   VS A++ G V +N        +PFGG K SG GRE  ++G+ E+ E+K V
Sbjct:  398 FIEPTVFSNVTDDMRIAKEEIFGPVQEILRFKTMDEVIERANNSDFGLVAAVFTNDINKALMVSSAMQAGTVWINCYNALNAQSPFGGFKMSGNGREMGEFGLREYSEVKTV 509          
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: AL1A2_MOUSE (Retinal dehydrogenase 2 OS=Mus musculus GN=Aldh1a2 PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 4.750e-21
Identity = 50/112 (44.64%), Postives = 73/112 (65.18%), Query Frame = -1
Query:  328 FYEPTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 663
            F EPTV SNV  +M +++EE+FGPV  +L FKT +E I  AN+++ GL A +FTN++ +   VS A++ G V +N        +PFGG K SG GRE  ++G+ E+ E+K V
Sbjct:  398 FIEPTVFSNVTDDMRIAKEEIFGPVQEILRFKTMDEVIERANNSDFGLVAAVFTNDINKALMVSSAMQAGTVWINCYNALNAQSPFGGFKMSGNGREMGEFGLREYSEVKTV 509          
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: AL1A2_HUMAN (Retinal dehydrogenase 2 OS=Homo sapiens GN=ALDH1A2 PE=1 SV=3)

HSP 1 Score: 101.293 bits (251), Expect = 4.750e-21
Identity = 50/112 (44.64%), Postives = 73/112 (65.18%), Query Frame = -1
Query:  328 FYEPTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 663
            F EPTV SNV  +M +++EE+FGPV  +L FKT +E I  AN+++ GL A +FTN++ +   VS A++ G V +N        +PFGG K SG GRE  ++G+ E+ E+K V
Sbjct:  398 FIEPTVFSNVTDDMRIAKEEIFGPVQEILRFKTMDEVIERANNSDFGLVAAVFTNDINKALTVSSAMQAGTVWINCYNALNAQSPFGGFKMSGNGREMGEFGLREYSEVKTV 509          
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: AL1A1_MACFA (Retinal dehydrogenase 1 OS=Macaca fascicularis GN=ALDH1A1 PE=2 SV=3)

HSP 1 Score: 101.293 bits (251), Expect = 4.750e-21
Identity = 51/112 (45.54%), Postives = 73/112 (65.18%), Query Frame = -1
Query:  328 FYEPTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 663
            F +PTV SNV  EM +++EE+FGPV  ++ FK+ ++ I  AN+T  GL+A +FTN++ +   +S AL+ G V VN   + T   PFGG K SG GRE  +YG  E+ E+K V
Sbjct:  381 FVQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTFYGLSAGVFTNDIDKAVTISSALQAGTVWVNCYGVVTAQCPFGGFKMSGNGRELGEYGFHEYTEVKTV 492          
The following BLAST results are available for this feature:
BLAST of CF832913 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 370
Match NameE-valueIdentityDescription
ALD1_STAS13.637e-2142.86Putative aldehyde dehydrogenase SSP0762 OS=Staphyl... [more]
AL1B1_RAT3.637e-2147.37Aldehyde dehydrogenase X, mitochondrial OS=Rattus ... [more]
AL1A1_MOUSE3.637e-2144.74Retinal dehydrogenase 1 OS=Mus musculus GN=Aldh1a1... [more]
ALD1_STAHJ4.750e-2141.96Putative aldehyde dehydrogenase SH0913 OS=Staphylo... [more]
AL1A7_MOUSE4.750e-2145.61Aldehyde dehydrogenase, cytosolic 1 OS=Mus musculu... [more]
AL1A3_RAT4.750e-2146.49Aldehyde dehydrogenase family 1 member A3 OS=Rattu... [more]
AL1A2_RAT4.750e-2144.64Retinal dehydrogenase 2 OS=Rattus norvegicus GN=Al... [more]
AL1A2_MOUSE4.750e-2144.64Retinal dehydrogenase 2 OS=Mus musculus GN=Aldh1a2... [more]
AL1A2_HUMAN4.750e-2144.64Retinal dehydrogenase 2 OS=Homo sapiens GN=ALDH1A2... [more]
AL1A1_MACFA4.750e-2145.54Retinal dehydrogenase 1 OS=Macaca fascicularis GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02K13_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02K13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832913 ID=CF832913; Name=CF832913; organism=Citrus sinensis; type=EST; length=663bp
TTTTTTTTTTTCTGACACCAGACATTCAAGTTCCATTTTGCAAACTTATT
TATGTACATGGGGTATCAATAGCAAACCACCTATGGCTCACTACTAGACA
TTCAAGTTCCATTTTGCAAACTTATTTATGTACATGGGGTATCAATAGCA
AACCAACTATGGCTCACTACTACCTCCACATCAAACGCTTGAGGCTCACA
CTATTCCAATCCGTCTTCAAAATACAGTTCAAAGGCAGTACTAAAGGCTC
CTTCCTTCTTCTCCATAAGCCCGGTAACATACAGGTACAAAACTGGCCCA
TCATTTTCTGTTCATGTCTCCCAAGCACACATATTTTATTTCCAGGAATT
CATCCATCCCATACTTTGAACCTTCCCGTCCAAGACCAGATTGTTTAACA
CCACCAAAAGGAGCCACCTCTGTTGAAATTAATCCTTCATTAACACCAAC
GAGTCCATATTCTAGAGCTTCAGAGACACGCCATGTACGTTGAAGATTGT
TTGTAAATATATAAGCAGCTAACCCTGCATTGGTATCATTGGCCATATGG
ATAGCTTCCTCCTCAGTTTTGAAGCATAGAAGTGGGGCCACAGGTCCGAA
TACTTCCTCTCTCGAAACAAGCATCTCACTCTTGACATTGCTAAGGACTG
TAGGCTCATAAAA
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