CF832913

Overview
NameCF832913
Unique NameCF832913
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: AL1A1_RABIT (Retinal dehydrogenase 1 OS=Oryctolagus cuniculus GN=ALDH1A1 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.204e-21
Identity = 51/112 (45.54%), Postives = 73/112 (65.18%), Query Frame = -1
Query:  328 FYEPTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 663
            F +PTV SNV  EM +++EE+FGPV  ++ FK+ ++ I  AN+T  GL+A IFT +L +   VS AL+ G V VN   + +   PFGG K SG GRE  +YG+ ++ E+K V
Sbjct:  376 FIQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTTYGLSAGIFTKDLDKAVTVSSALQAGTVWVNCYSVVSAQVPFGGFKMSGNGRELGEYGLQQYTEVKTV 487          
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: BADH2_ARATH (Betaine aldehyde dehydrogenase 2, mitochondrial OS=Arabidopsis thaliana GN=ALDH10A9 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.103e-21
Identity = 51/112 (45.54%), Postives = 74/112 (66.07%), Query Frame = -1
Query:  328 FYEPTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 663
            F EP ++SNV + M + REEVFGP   +  F TE+EAI +AND+  GLA  + +N+L+R  RVS+A + G+V VN        AP+GG K+SG GRE  ++G++ +L +K V
Sbjct:  374 FVEPAIVSNVTTSMEIWREEVFGPALCVKTFSTEDEAIQLANDSQYGLAGAVLSNDLERCDRVSKAFQAGIVWVNCSQPCFCQAPWGGTKRSGFGRELGEWGLENYLSVKQV 485          
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: AL1A3_MOUSE (Aldehyde dehydrogenase family 1 member A3 OS=Mus musculus GN=Aldh1a3 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.103e-21
Identity = 52/114 (45.61%), Postives = 71/114 (62.28%), Query Frame = -1
Query:  322 FYEPTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCL 663
            F +PTV S+V   M +++EE+FGPV P+L FK  EE I  AN T+ GL A +FT NL +  +++ ALE G V +N        APFGG K SG GRE  +Y + E+ E+K V +
Sbjct:  392 FIKPTVFSDVTDNMRIAKEEIFGPVQPILKFKNLEEVIKRANSTDYGLTAAVFTKNLDKALKLAAALESGTVWINCYNAFYAQAPFGGFKMSGNGRELGEYALAEYTEVKTVTI 505          
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: AL1A1_CHICK (Retinal dehydrogenase 1 OS=Gallus gallus GN=ALDH1A1 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.058e-20
Identity = 50/114 (43.86%), Postives = 72/114 (63.16%), Query Frame = -1
Query:  322 FYEPTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCL 663
            F +PTV SNV  +M +++EE+FGPV  ++ FKT +E I  AN+T  GLAA +FT ++ +    + AL+ G V VN     +   PFGG K SG GRE  +YG+ E+ E+K V +
Sbjct:  389 FIQPTVFSNVTDDMRIAKEEIFGPVQQIMKFKTIDEVIKRANNTTYGLAAAVFTKDIDKALTFASALQAGTVWVNCYSAFSAQCPFGGFKMSGNGRELGEYGLQEYTEVKTVTI 502          
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: ALDH1_ELEED (Aldehyde dehydrogenase, cytosolic 1 OS=Elephantulus edwardii GN=ALDH1 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.382e-20
Identity = 51/114 (44.74%), Postives = 74/114 (64.91%), Query Frame = -1
Query:  322 FYEPTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCL 663
            F +PTV SNV  +M +++EE+FGPV  ++ FK+ +E I  AN+T  GL A +FT +L +   VS AL+ G V VN  L ++  +P GG K SG GRE  +YG+ E+ E+K V +
Sbjct:  381 FIQPTVFSNVTDDMRIAKEEIFGPVQQIMKFKSLDEVIKRANNTYYGLVAGVFTKDLDKAVTVSSALQAGTVWVNCYLAASAQSPAGGFKMSGHGREMGEYGIHEYTEVKTVTM 494          
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: AL1A2_CHICK (Retinal dehydrogenase 2 OS=Gallus gallus GN=ALDH1A2 PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.382e-20
Identity = 50/114 (43.86%), Postives = 73/114 (64.04%), Query Frame = -1
Query:  322 FYEPTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCL 663
            F EPTV SNV  +M +++EE+FGPV  +L FKT +E I  AN+++ GL A +FTN++ +   VS A++ G V +N        +PFGG K SG GRE  + G+ E+ E+K V +
Sbjct:  398 FIEPTVFSNVTDDMRIAKEEIFGPVQEILRFKTVDEVIERANNSDFGLVAAVFTNDINKALTVSSAMQAGTVWINCYNALNAQSPFGGFKMSGNGREMGESGLREYSEVKTVTI 511          
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: BETB_RHOS1 (Betaine aldehyde dehydrogenase OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=betB PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.805e-20
Identity = 52/115 (45.22%), Postives = 75/115 (65.22%), Query Frame = -1
Query:  319 FYEPTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCLG 663
            + +PTV ++V   M ++REEVFGPV  +L F+TEEEAI  AN T+ GLAA +FT +L R  RV   L+ G   +N   ++   APFGGVK SG+GRE  +  ++ + ++K V +G
Sbjct:  361 YVQPTVFADVTDAMTLAREEVFGPVMAVLDFETEEEAIARANATDFGLAAGVFTADLTRAHRVVAQLQAGTCWINAYNLTPVEAPFGGVKLSGVGRENGRAAVEHYTQVKSVYVG 475          
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: ALDH1_MACPR (Aldehyde dehydrogenase, cytosolic 1 OS=Macroscelides proboscideus GN=ALDH1 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.805e-20
Identity = 50/114 (43.86%), Postives = 74/114 (64.91%), Query Frame = -1
Query:  322 FYEPTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCL 663
            F +PT+ SNV  +M +++EE+FGPV  ++ FK+ +E I  AN+T  GL A +FT +L +   VS AL+ G V VN  L ++  +P GG K SG GRE  +YG+ E+ E+K V +
Sbjct:  381 FIQPTIFSNVTDDMRIAKEEIFGPVQQIMKFKSLDEVIKRANNTYYGLVAGVFTKDLDKAVTVSSALQAGTVWVNCYLAASAQSPAGGFKMSGHGREMGEYGIHEYTEVKTVTM 494          
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: BADH_AMAHP (Betaine aldehyde dehydrogenase, chloroplastic OS=Amaranthus hypochondriacus GN=BADH4 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.358e-20
Identity = 51/112 (45.54%), Postives = 73/112 (65.18%), Query Frame = -1
Query:  328 FYEPTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 663
            + EPT++S+V + M + REEVFGPV     F +E+EAI +ANDT  GL A + + +L R  R+++ALE G V VN        AP+GG K+SG GRE  ++G++ +L IK V
Sbjct:  374 YVEPTIISDVSTSMQIWREEVFGPVLCQKTFGSEDEAIELANDTQYGLGAAVLSKDLDRCERITKALEVGAVWVNCSQPCFTQAPWGGTKRSGFGRELGEWGIENYLNIKQV 485          
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: ALDH2_MOUSE (Aldehyde dehydrogenase, mitochondrial OS=Mus musculus GN=Aldh2 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.358e-20
Identity = 50/112 (44.64%), Postives = 72/112 (64.29%), Query Frame = -1
Query:  328 FYEPTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 663
            F +PTV  +VK  M +++EE+FGPV  +L FKT EE +  AND+  GLAA +FT +L +   +S+AL+ G V +N   +    +PFGG K SG GRE  +YG+  + E+K V
Sbjct:  399 FIQPTVFGDVKDGMTIAKEEIFGPVMQILKFKTIEEVVGRANDSKYGLAAAVFTKDLDKANYLSQALQAGTVWINCYDVFGAQSPFGGYKMSGSGRELGEYGLQAYTEVKTV 510          
The following BLAST results are available for this feature:
BLAST of CF832913 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 370
Match NameE-valueIdentityDescription
AL1A1_RABIT6.204e-2145.54Retinal dehydrogenase 1 OS=Oryctolagus cuniculus G... [more]
BADH2_ARATH8.103e-2145.54Betaine aldehyde dehydrogenase 2, mitochondrial OS... [more]
AL1A3_MOUSE8.103e-2145.61Aldehyde dehydrogenase family 1 member A3 OS=Mus m... [more]
AL1A1_CHICK1.058e-2043.86Retinal dehydrogenase 1 OS=Gallus gallus GN=ALDH1A... [more]
ALDH1_ELEED1.382e-2044.74Aldehyde dehydrogenase, cytosolic 1 OS=Elephantulu... [more]
AL1A2_CHICK1.382e-2043.86Retinal dehydrogenase 2 OS=Gallus gallus GN=ALDH1A... [more]
BETB_RHOS11.805e-2045.22Betaine aldehyde dehydrogenase OS=Rhodobacter spha... [more]
ALDH1_MACPR1.805e-2043.86Aldehyde dehydrogenase, cytosolic 1 OS=Macroscelid... [more]
BADH_AMAHP2.358e-2045.54Betaine aldehyde dehydrogenase, chloroplastic OS=A... [more]
ALDH2_MOUSE2.358e-2044.64Aldehyde dehydrogenase, mitochondrial OS=Mus muscu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02K13_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02K13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832913 ID=CF832913; Name=CF832913; organism=Citrus sinensis; type=EST; length=663bp
TTTTTTTTTTTCTGACACCAGACATTCAAGTTCCATTTTGCAAACTTATT
TATGTACATGGGGTATCAATAGCAAACCACCTATGGCTCACTACTAGACA
TTCAAGTTCCATTTTGCAAACTTATTTATGTACATGGGGTATCAATAGCA
AACCAACTATGGCTCACTACTACCTCCACATCAAACGCTTGAGGCTCACA
CTATTCCAATCCGTCTTCAAAATACAGTTCAAAGGCAGTACTAAAGGCTC
CTTCCTTCTTCTCCATAAGCCCGGTAACATACAGGTACAAAACTGGCCCA
TCATTTTCTGTTCATGTCTCCCAAGCACACATATTTTATTTCCAGGAATT
CATCCATCCCATACTTTGAACCTTCCCGTCCAAGACCAGATTGTTTAACA
CCACCAAAAGGAGCCACCTCTGTTGAAATTAATCCTTCATTAACACCAAC
GAGTCCATATTCTAGAGCTTCAGAGACACGCCATGTACGTTGAAGATTGT
TTGTAAATATATAAGCAGCTAACCCTGCATTGGTATCATTGGCCATATGG
ATAGCTTCCTCCTCAGTTTTGAAGCATAGAAGTGGGGCCACAGGTCCGAA
TACTTCCTCTCTCGAAACAAGCATCTCACTCTTGACATTGCTAAGGACTG
TAGGCTCATAAAA
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