CF832913

Overview
NameCF832913
Unique NameCF832913
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: BETB_RHOS4 (Betaine aldehyde dehydrogenase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=betB PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.079e-20
Identity = 52/115 (45.22%), Postives = 74/115 (64.35%), Query Frame = -1
Query:  319 FYEPTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCLG 663
            + +PTV ++V   M ++REEVFGPV  +L F+TEEEAI  AN T+ GLAA +FT +L R  RV   L+ G   +N   ++   APFGGVK SG+GRE  +  +  + ++K V +G
Sbjct:  361 YVQPTVFADVTDAMTLAREEVFGPVMAVLDFETEEEAIARANATDFGLAAGVFTADLTRAHRVVAQLQAGTCWINAYNLTPVEAPFGGVKLSGVGRENGRAAVQHYTQVKSVYVG 475          
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: AL1A1_SHEEP (Retinal dehydrogenase 1 OS=Ovis aries GN=ALDH1A1 PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.079e-20
Identity = 50/114 (43.86%), Postives = 74/114 (64.91%), Query Frame = -1
Query:  322 FYEPTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCL 663
            F +PTV S+V  +M +++EE+FGPV  ++ FK+ ++ I  AN+T  GL+A IFTN++ +   VS AL+ G V VN   + +   PFGG K SG GRE  +YG  E+ E+K V +
Sbjct:  381 FIQPTVFSDVTDDMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTFYGLSAGIFTNDIDKAITVSSALQSGTVWVNCYSVVSAQCPFGGFKMSGNGRELGEYGFHEYTEVKTVTI 494          
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: AL1A1_BOVIN (Retinal dehydrogenase 1 OS=Bos taurus GN=ALDH1A1 PE=2 SV=3)

HSP 1 Score: 98.5969 bits (244), Expect = 3.079e-20
Identity = 50/114 (43.86%), Postives = 74/114 (64.91%), Query Frame = -1
Query:  322 FYEPTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCL 663
            F +PTV S+V  +M +++EE+FGPV  ++ FK+ ++ I  AN+T  GL+A IFTN++ +   VS AL+ G V VN   + +   PFGG K SG GRE  +YG  E+ E+K V +
Sbjct:  381 FIQPTVFSDVTDDMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTFYGLSAGIFTNDIDKAITVSSALQSGTVWVNCYSVVSAQCPFGGFKMSGNGRELGEYGFHEYTEVKTVTI 494          
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: BETB_RHOS5 (Betaine aldehyde dehydrogenase OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=betB PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.021e-20
Identity = 51/115 (44.35%), Postives = 74/115 (64.35%), Query Frame = -1
Query:  319 FYEPTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCLG 663
            + +PTV ++V   M ++REEVFGPV  +L F+TEEE I  AN T+ GLAA +FT +L R  RV   L+ G   +N   ++   APFGGVK SG+GRE  +  ++ + ++K V +G
Sbjct:  361 YVQPTVFADVTDGMTLAREEVFGPVMAVLDFETEEEVIARANATDFGLAAGVFTADLTRAHRVVAQLQAGTCWINAYNLTPVEAPFGGVKMSGVGRENGRAAVEHYTQVKSVYVG 475          
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: AL9A1_BOVIN (4-trimethylaminobutyraldehyde dehydrogenase OS=Bos taurus GN=ALDH9A1 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.021e-20
Identity = 49/119 (41.18%), Postives = 73/119 (61.34%), Query Frame = -1
Query:  313 FYEPTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVC--LGDM 663
            +  P VL+N + +M   +EE+FGPV  +L F TE E +  ANDT  GLAA +FT ++QR  RV   L+ G+  +N   +S    PFGG K+SG GRE  +  ++ + ++K VC  +GD+
Sbjct:  372 YMRPCVLTNCRDDMTCVKEEIFGPVMSILSFDTEAEVLERANDTTFGLAAGVFTRDIQRAHRVVAELQAGMCFINNYNVSPVELPFGGYKKSGFGRENGRVTIEYYSQLKTVCVEMGDV 490          
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: AL1A1_HUMAN (Retinal dehydrogenase 1 OS=Homo sapiens GN=ALDH1A1 PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 4.021e-20
Identity = 51/113 (45.13%), Postives = 75/113 (66.37%), Query Frame = -1
Query:  328 FYEPTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVN-EGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 663
            F +PTV SNV  EM +++EE+FGPV  ++ FK+ ++ I  AN+T  GL+A +FT ++ +   +S AL+ G V VN  G++S +  PFGG K SG GRE  +YG  E+ E+K V
Sbjct:  381 FVQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTFYGLSAGVFTKDIDKAITISSALQAGTVWVNCYGVVSAQ-CPFGGFKMSGNGRELGEYGFHEYTEVKTV 492          
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: AL1A1_HORSE (Retinal dehydrogenase 1 OS=Equus caballus GN=ALDH1A1 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.252e-20
Identity = 53/113 (46.90%), Postives = 73/113 (64.60%), Query Frame = -1
Query:  328 FYEPTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVN-EGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 663
            F +PTV SNV  EM +++EE+FGPV  ++ FK+ ++ I  AN+T  GL A  FT +L +   VS AL+ G V VN  G++S +  PFGG K SG GRE  +YG  E+ E+K V
Sbjct:  380 FIQPTVFSNVSDEMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTTYGLFAGSFTKDLDKAITVSAALQAGTVWVNCYGVVSAQ-CPFGGFKMSGNGREMGEYGFHEYTEVKTV 491          
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: ALDH4_BACSU (Putative aldehyde dehydrogenase dhaS OS=Bacillus subtilis GN=dhaS PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.860e-20
Identity = 47/112 (41.96%), Postives = 72/112 (64.29%), Query Frame = -1
Query:  328 FYEPTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 663
            F  PTV +NV+ EM +++EE+FGPV   + ++T +E I  AN +  GLAA ++T N+++   +++ L+ G V VN   +    +PFGG KQSGLGRE   Y +D + E+K V
Sbjct:  378 FVAPTVFANVEDEMTIAKEEIFGPVLTAIPYETVDEVIERANHSEYGLAAGLWTENVKQAHYIADRLQAGTVWVNCYNVFDAASPFGGYKQSGLGREMGSYALDNYTEVKSV 489          
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: ALDH2_MESAU (Aldehyde dehydrogenase, mitochondrial OS=Mesocricetus auratus GN=ALDH2 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.860e-20
Identity = 49/114 (42.98%), Postives = 73/114 (64.04%), Query Frame = -1
Query:  322 FYEPTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCL 663
            F +PTV  +VK  M +++EE+FGPV  +L FKT EE +  AN++  GLAA +FT +L +   +S+AL+ G V +N   +    +PFGG K SG GRE  +YG+  + E+K V +
Sbjct:  380 FIQPTVFGDVKDGMTIAKEEIFGPVMQILKFKTIEEVVGRANNSKYGLAAAVFTKDLDKANYLSQALQAGTVWINCYDVFGAQSPFGGYKMSGSGRELGEYGLQAYTEVKTVTI 493          
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: ALDH2_RAT (Aldehyde dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Aldh2 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.959e-20
Identity = 49/112 (43.75%), Postives = 72/112 (64.29%), Query Frame = -1
Query:  328 FYEPTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 663
            F +PTV  +VK  M +++EE+FGPV  +L FKT EE +  AN++  GLAA +FT +L +   +S+AL+ G V +N   +    +PFGG K SG GRE  +YG+  + E+K V
Sbjct:  399 FIQPTVFGDVKDGMTIAKEEIFGPVMQILKFKTIEEVVGRANNSKYGLAAAVFTKDLDKANYLSQALQAGTVWINCYDVFGAQSPFGGYKMSGSGRELGEYGLQAYTEVKTV 510          
The following BLAST results are available for this feature:
BLAST of CF832913 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 370
Match NameE-valueIdentityDescription
BETB_RHOS43.079e-2045.22Betaine aldehyde dehydrogenase OS=Rhodobacter spha... [more]
AL1A1_SHEEP3.079e-2043.86Retinal dehydrogenase 1 OS=Ovis aries GN=ALDH1A1 P... [more]
AL1A1_BOVIN3.079e-2043.86Retinal dehydrogenase 1 OS=Bos taurus GN=ALDH1A1 P... [more]
BETB_RHOS54.021e-2044.35Betaine aldehyde dehydrogenase OS=Rhodobacter spha... [more]
AL9A1_BOVIN4.021e-2041.184-trimethylaminobutyraldehyde dehydrogenase OS=Bos... [more]
AL1A1_HUMAN4.021e-2045.13Retinal dehydrogenase 1 OS=Homo sapiens GN=ALDH1A1... [more]
AL1A1_HORSE5.252e-2046.90Retinal dehydrogenase 1 OS=Equus caballus GN=ALDH1... [more]
ALDH4_BACSU6.860e-2041.96Putative aldehyde dehydrogenase dhaS OS=Bacillus s... [more]
ALDH2_MESAU6.860e-2042.98Aldehyde dehydrogenase, mitochondrial OS=Mesocrice... [more]
ALDH2_RAT8.959e-2043.75Aldehyde dehydrogenase, mitochondrial OS=Rattus no... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02K13_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02K13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832913 ID=CF832913; Name=CF832913; organism=Citrus sinensis; type=EST; length=663bp
TTTTTTTTTTTCTGACACCAGACATTCAAGTTCCATTTTGCAAACTTATT
TATGTACATGGGGTATCAATAGCAAACCACCTATGGCTCACTACTAGACA
TTCAAGTTCCATTTTGCAAACTTATTTATGTACATGGGGTATCAATAGCA
AACCAACTATGGCTCACTACTACCTCCACATCAAACGCTTGAGGCTCACA
CTATTCCAATCCGTCTTCAAAATACAGTTCAAAGGCAGTACTAAAGGCTC
CTTCCTTCTTCTCCATAAGCCCGGTAACATACAGGTACAAAACTGGCCCA
TCATTTTCTGTTCATGTCTCCCAAGCACACATATTTTATTTCCAGGAATT
CATCCATCCCATACTTTGAACCTTCCCGTCCAAGACCAGATTGTTTAACA
CCACCAAAAGGAGCCACCTCTGTTGAAATTAATCCTTCATTAACACCAAC
GAGTCCATATTCTAGAGCTTCAGAGACACGCCATGTACGTTGAAGATTGT
TTGTAAATATATAAGCAGCTAACCCTGCATTGGTATCATTGGCCATATGG
ATAGCTTCCTCCTCAGTTTTGAAGCATAGAAGTGGGGCCACAGGTCCGAA
TACTTCCTCTCTCGAAACAAGCATCTCACTCTTGACATTGCTAAGGACTG
TAGGCTCATAAAA
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