CF832913

Overview
NameCF832913
Unique NameCF832913
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: BETB_AGRRK (Betaine aldehyde dehydrogenase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=betB PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.404e-19
Identity = 49/115 (42.61%), Postives = 71/115 (61.74%), Query Frame = -1
Query:  319 FYEPTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCLG 663
            + +PTV ++V  +M ++REE+FGPV  +L F  E E I  ANDT  GL+  +FT +L R  RV + LE G + +N   ++    PFGG KQSG GRE S   ++ + E+K V +G
Sbjct:  365 YVQPTVFADVTDDMTIAREEIFGPVMCVLDFDDEAEVIARANDTEFGLSGGVFTADLTRAHRVVDQLEAGTLWINAYNLAPVEIPFGGSKQSGFGRENSLAALEHYSELKTVYVG 479          
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: AL1B1_MOUSE (Aldehyde dehydrogenase X, mitochondrial OS=Mus musculus GN=Aldh1b1 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.404e-19
Identity = 51/114 (44.74%), Postives = 71/114 (62.28%), Query Frame = -1
Query:  322 FYEPTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCL 663
            F +PTV  +V+  M +++EE+FGPV PL  FK  EE I  AN+T  GLAA +FT +L +    ++AL+ G V VN   I T   PFGG K+SG GRE  + G+  + E+K V +
Sbjct:  399 FIKPTVFGDVQDGMRIAKEEIFGPVQPLFKFKKIEEVIQRANNTRYGLAAAVFTRDLDKAIYFTQALQAGTVWVNTYNIVTCHTPFGGFKESGNGRELGEDGLRAYTEVKTVTI 512          
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: BETB_RHILO (Betaine aldehyde dehydrogenase OS=Rhizobium loti GN=betB PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.446e-19
Identity = 53/119 (44.54%), Postives = 71/119 (59.66%), Query Frame = -1
Query:  313 FYEPTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIK--YVCLGDM 663
            F EPTV + V   M ++REE+FGPV  +L F  E+E I  ANDT  GLAA +FT +L R  RV   L+ G   +N   ++    PFGG KQSG+GRE S   +  + ++K  YV  GD+
Sbjct:  365 FVEPTVFTGVTDTMRIAREEIFGPVMSVLKFDGEDEVIDRANDTEFGLAAGVFTRDLPRAHRVIAELQAGTCWINAYNLTPVEIPFGGFKQSGIGRENSLAALALYSQLKSIYVETGDV 483          
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: AL1A2_TAEGU (Retinal dehydrogenase 2 OS=Taeniopygia guttata GN=ALDH1A2 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.446e-19
Identity = 50/114 (43.86%), Postives = 73/114 (64.04%), Query Frame = -1
Query:  322 FYEPTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCL 663
            F EPTV SNV  +M +++EE+FGPV  +L FKT +E I  AN+++ GL A +FTN++ +   VS A++ G V +N        +PFGG K SG GRE  + G+ E+ E+K V +
Sbjct:  398 FIEPTVFSNVTDDMRIAKEEIFGPVQEILRFKTMDEVIERANNSDFGLVAAVFTNDINKALTVSSAMQAGTVWINCYNALNAQSPFGGSK-SGNGREMGECGLREYSEVKTVTI 510          
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: GABD_DEIRA (Succinate-semialdehyde dehydrogenase [NADP+] OS=Deinococcus radiodurans GN=ssdA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.807e-19
Identity = 50/112 (44.64%), Postives = 70/112 (62.50%), Query Frame = -1
Query:  328 FYEPTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 663
            F +PTVL++V  +M    EE+FGPVA +   + E+EA+ +AN +  GL   +F+++L R  RV+E L+ G+V +N    S    PFGGVK+SG GRE S  GM EF   K V
Sbjct:  352 FVQPTVLTDVTPDMRAYHEELFGPVAVVYRVRDEDEAVALANASTYGLGGAVFSSDLDRAQRVAERLDTGMVWINHPTSSAADLPFGGVKRSGFGRELSSMGMLEFTNQKLV 463          
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: BETB_SERP5 (Betaine aldehyde dehydrogenase OS=Serratia proteamaculans (strain 568) GN=betB PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.807e-19
Identity = 48/112 (42.86%), Postives = 68/112 (60.71%), Query Frame = -1
Query:  328 FYEPTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 663
            +  PTV ++ + EM + REE+FGPV  +L +++EEE +  ANDT  GLAA + TN+L R  RV   LE G+  +N    S    P GG KQSG+GRE     ++ + +IK V
Sbjct:  368 YVAPTVFTDCRDEMEIVREEIFGPVMSILSYQSEEEVVRRANDTTFGLAAGVVTNDLTRAHRVIHQLEAGICWINTWGESAAEMPVGGYKQSGVGRENGLMTLEHYTQIKSV 479          
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: BETB_RHISN (Betaine aldehyde dehydrogenase OS=Rhizobium sp. (strain NGR234) GN=betB PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.807e-19
Identity = 49/115 (42.61%), Postives = 71/115 (61.74%), Query Frame = -1
Query:  319 FYEPTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCLG 663
            + +PTV ++V  EM ++REE+FGPV  +L F  E E +  AN T  GL+A +FT +L R  RV + LE G + +N   ++    PFGG KQSG GRE S   ++ + E+K V +G
Sbjct:  365 YIQPTVFADVTDEMTIAREEIFGPVMCVLDFDDEAEVVARANATEFGLSAGVFTADLTRAHRVVDQLEAGTLWINTYNLAPVEIPFGGSKQSGFGRENSVAALNHYTELKTVYVG 479          
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: BETB_PSEPF (Betaine aldehyde dehydrogenase OS=Pseudomonas fluorescens (strain Pf0-1) GN=betB PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.807e-19
Identity = 51/112 (45.54%), Postives = 66/112 (58.93%), Query Frame = -1
Query:  328 FYEPTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 663
            F  PTV ++   +M + REE+FGPV  +L ++TEEE I  ANDT+ GLAA I T +L R  RV   LE G+  +N    S    P GG KQSG+GRE     ++ F  IK V
Sbjct:  368 FVAPTVFTDCTDDMTIVREEIFGPVMAILSYETEEEVIRRANDTDFGLAAGIVTRDLNRAHRVIHQLEAGICWINAWGESDAKMPVGGYKQSGVGRENGISSLNNFTRIKSV 479          
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: ALDH_ASPNG (Aldehyde dehydrogenase OS=Aspergillus niger GN=aldA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.584e-19
Identity = 49/112 (43.75%), Postives = 70/112 (62.50%), Query Frame = -1
Query:  328 FYEPTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 663
            F +PTV ++V S+M +++EE+FGPV  +  FK  E+AI + N T+ GLAA I T ++    RVS AL  G V VN   +     PFGG K+SG+GRE   Y ++ + +IK V
Sbjct:  377 FIQPTVFTDVTSDMKINQEEIFGPVVTVQKFKDVEDAIKIGNSTSYGLAAGIHTKDVTTAIRVSNALRAGTVWVNSYNLIQYQVPFGGFKESGIGRELGSYALENYTQIKAV 488          
BLAST of CF832913 vs. ExPASy Swiss-Prot
Match: ALDH2_BOVIN (Aldehyde dehydrogenase, mitochondrial OS=Bos taurus GN=ALDH2 PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 7.584e-19
Identity = 48/112 (42.86%), Postives = 72/112 (64.29%), Query Frame = -1
Query:  328 FYEPTVLSNVKSEMLVSREEVFGPVAPLLCFKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 663
            F +PTV  +V+  M +++EE+FGPV  +L FK+ EE +  AN++  GLAA +FT +L +   +S+AL+ G V VN   +    +PFGG K SG GRE  +YG+  + E+K V
Sbjct:  400 FIQPTVFGDVQDGMTIAKEEIFGPVMQILKFKSMEEVVGRANNSKYGLAAAVFTKDLDKANYLSQALQAGTVWVNCYDVFGAQSPFGGYKLSGSGRELGEYGLQAYTEVKTV 511          
The following BLAST results are available for this feature:
BLAST of CF832913 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 370
Match NameE-valueIdentityDescription
BETB_AGRRK3.404e-1942.61Betaine aldehyde dehydrogenase OS=Agrobacterium ra... [more]
AL1B1_MOUSE3.404e-1944.74Aldehyde dehydrogenase X, mitochondrial OS=Mus mus... [more]
BETB_RHILO4.446e-1944.54Betaine aldehyde dehydrogenase OS=Rhizobium loti G... [more]
AL1A2_TAEGU4.446e-1943.86Retinal dehydrogenase 2 OS=Taeniopygia guttata GN=... [more]
GABD_DEIRA5.807e-1944.64Succinate-semialdehyde dehydrogenase [NADP+] OS=De... [more]
BETB_SERP55.807e-1942.86Betaine aldehyde dehydrogenase OS=Serratia proteam... [more]
BETB_RHISN5.807e-1942.61Betaine aldehyde dehydrogenase OS=Rhizobium sp. (s... [more]
BETB_PSEPF5.807e-1945.54Betaine aldehyde dehydrogenase OS=Pseudomonas fluo... [more]
ALDH_ASPNG7.584e-1943.75Aldehyde dehydrogenase OS=Aspergillus niger GN=ald... [more]
ALDH2_BOVIN7.584e-1942.86Aldehyde dehydrogenase, mitochondrial OS=Bos tauru... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02K13_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02K13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832913 ID=CF832913; Name=CF832913; organism=Citrus sinensis; type=EST; length=663bp
TTTTTTTTTTTCTGACACCAGACATTCAAGTTCCATTTTGCAAACTTATT
TATGTACATGGGGTATCAATAGCAAACCACCTATGGCTCACTACTAGACA
TTCAAGTTCCATTTTGCAAACTTATTTATGTACATGGGGTATCAATAGCA
AACCAACTATGGCTCACTACTACCTCCACATCAAACGCTTGAGGCTCACA
CTATTCCAATCCGTCTTCAAAATACAGTTCAAAGGCAGTACTAAAGGCTC
CTTCCTTCTTCTCCATAAGCCCGGTAACATACAGGTACAAAACTGGCCCA
TCATTTTCTGTTCATGTCTCCCAAGCACACATATTTTATTTCCAGGAATT
CATCCATCCCATACTTTGAACCTTCCCGTCCAAGACCAGATTGTTTAACA
CCACCAAAAGGAGCCACCTCTGTTGAAATTAATCCTTCATTAACACCAAC
GAGTCCATATTCTAGAGCTTCAGAGACACGCCATGTACGTTGAAGATTGT
TTGTAAATATATAAGCAGCTAACCCTGCATTGGTATCATTGGCCATATGG
ATAGCTTCCTCCTCAGTTTTGAAGCATAGAAGTGGGGCCACAGGTCCGAA
TACTTCCTCTCTCGAAACAAGCATCTCACTCTTGACATTGCTAAGGACTG
TAGGCTCATAAAA
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