CF832919
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF832919 vs. ExPASy Swiss-Prot
Match: RS2_METMA (30S ribosomal protein S2P OS=Methanosarcina mazei GN=rps2p PE=3 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 2.324e-30 Identity = 69/187 (36.90%), Postives = 112/187 (59.89%), Query Frame = 2 Query: 8 ATVPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGT 568 A ++ S I LAA VH+GT+ M R+V++ R DG+Y++++ T E++++A++++ + P I+V S+R YGQ F++ A+ GR PG+ TN F EP ++I+TDP D Q +KEA+ +P IA CDT++ VD+ IP NNKG+ ++ ++WLLAR V ++ T Sbjct: 26 AASAKEGSTSLVSIDEYLAAGVHIGTQQKTQDMMRFVYRVRTDGLYVLDIQSTDERIRVASKLLSHYD-PSRILVVSSRQYGQHPARMFSRALGTRAMLGRFIPGSLTNPQIHGFFEPDVIIVTDPAGDAQVLKEASSIGVPVIALCDTNNLTSNVDLVIPTNNKGRKALSLVYWLLAREVSRLNNT 211
BLAST of CF832919 vs. ExPASy Swiss-Prot
Match: RS2_METB6 (30S ribosomal protein S2P OS=Methanoregula boonei (strain 6A8) GN=rps2p PE=3 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 2.324e-30 Identity = 64/181 (35.36%), Postives = 113/181 (62.43%), Query Frame = 2 Query: 23 QLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRG 565 +L + ++ LAA VH+GT+ M++++++ R DG+YI+++ +T +++ A+ + E P +I+V ++R YGQ KFA A + GR PG TN + + EP+++++TDP D Q I EA IP +A CDT++ ++VD+ IP NNKG+ ++ +++LL R +L++RG Sbjct: 10 ELKEPLIPVEEYLAAGVHIGTQQKSEDMKKFIYRVRGDGLYILDIRETDARIKTVAKFLTQYEAP-EILVVTSRQYGQYPAKKFADTIGAMSATGRFIPGLLTNPVLDGYIEPKVIVVTDPIGDAQVINEAVQCGIPVVALCDTNNMTKFVDLVIPTNNKGRKALSMIYFLLTREMLRIRG 189
BLAST of CF832919 vs. ExPASy Swiss-Prot
Match: RS2_METMJ (30S ribosomal protein S2P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps2p PE=3 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 3.035e-30 Identity = 68/184 (36.96%), Postives = 111/184 (60.33%), Query Frame = 2 Query: 23 QLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFN---EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRG 565 +L + ++ LAA VH+GT+ M +++++ R DG+YI+++ T E+++ AA+ + E P I+V ++R YGQ KFA A+ GR PG TNQ N EP ++++TDP D Q I EA IP +A CDT++ +YVD+ IP NNKG+ ++ +++LL + +L++RG Sbjct: 9 ELKEPLLPVEEYLAAGVHIGTQQKSKDMMKFIYRVRGDGLYILDIQATDERIKTAAKFLSQYE-PSKILVVTSRQYGQYPAKKFADAIGGMAVVGRFIPGMLTNQRLHGLNKYIEPDVVVVTDPIGDSQTIAEAVQVGIPIVALCDTNNMTKYVDVVIPTNNKGRKALSVIYYLLTKELLRLRG 191
BLAST of CF832919 vs. ExPASy Swiss-Prot
Match: RS2_METHJ (30S ribosomal protein S2P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps2p PE=3 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 3.035e-30 Identity = 63/181 (34.81%), Postives = 115/181 (63.54%), Query Frame = 2 Query: 23 QLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRG 565 +L++ ++ LAA VH+GT+ M+ ++++ R DG+YI+++ +T E++++AA+ + + P I+V ++R YGQ +FA A I GR+ PGT TN + + EP ++++TDP +D Q I+EA +IP +A CDT++ VD+ +P NNKG+ ++ +++LL + L+ +G Sbjct: 9 ELNEPLVSVEEYLAAGVHIGTQQKSSDMKNFIYRVRGDGLYILDIRETDERIKLAAKFLSQYD-PAKILVVTSRQYGQYPARRFADSIGATPIIGRYIPGTLTNPLLPRYAEPDVVVVTDPVSDLQVIREAIQVSIPVVALCDTNNMTSLVDVVVPTNNKGRKALSMIYFLLTKEFLRHKG 188
BLAST of CF832919 vs. ExPASy Swiss-Prot
Match: RS2_HALWD (30S ribosomal protein S2P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps2p PE=3 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 3.964e-30 Identity = 68/184 (36.96%), Postives = 109/184 (59.24%), Query Frame = 2 Query: 26 LSQKEAD----IQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRG 565 + +EAD ++ L+A VH+GT+ MER++ + R+DG+Y++++ +T +++ AA + A NP ++V S+R YG+ KFA A A GR PGT TN + EP ++++TDP D Q +KEA IP IA CD+++ D+ +P NNKG+ ++ ++WLLA L RG Sbjct: 83 MPDEEADLLIPVEDYLSAGVHIGTQQKTSDMERFIHRVRDDGLYVLDVSQTDSRIRTAANFL-ANYNPDQMLVTSSRQYGRFPAKKFADAVGARARTGRFIPGTLTNPDYAGYIEPDVVVVTDPIGDAQAVKEAITVGIPVIAMCDSNNQTSNTDLVVPTNNKGRRALSVVYWLLANETLDRRG 265
BLAST of CF832919 vs. ExPASy Swiss-Prot
Match: RS2_METAC (30S ribosomal protein S2P OS=Methanosarcina acetivorans GN=rps2p PE=3 SV=2) HSP 1 Score: 131.339 bits (329), Expect = 5.178e-30 Identity = 66/174 (37.93%), Postives = 108/174 (62.07%), Query Frame = 2 Query: 47 IQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGT 568 I LAA VH+GT+ M R+V++ R DG+Y++++ T E++++A++++ + P I+V S+R YGQ F++ A+ GR PG+ TN F EP ++I+TDP D Q +KEA+ +P +A CDT++ VD+ IP NNKG+ ++ ++WLLAR V ++ T Sbjct: 40 IDEYLAAGVHIGTQQKTQDMMRFVYRVRTDGLYVLDIQSTDERIRVASKLLSHYD-PARILVVSSRQYGQHPARMFSRALGTRAMLGRFIPGSLTNPQIHGFFEPDVIIVTDPAGDAQVLKEASSIGVPVVALCDTNNLTSNVDLVIPTNNKGRKALSLVYWLLAREVSRLNDT 212
BLAST of CF832919 vs. ExPASy Swiss-Prot
Match: RS2_METBU (30S ribosomal protein S2P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps2p PE=3 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 6.762e-30 Identity = 68/172 (39.53%), Postives = 105/172 (61.05%), Query Frame = 2 Query: 47 IQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMR 562 I LAA VH+GT+ M ++V++ R DG+Y++++ T E+++ A + ++ +P I+V SAR YGQ F+K A + GR PG+ TN +Q F EP ++I+TDP D Q I+EA IP +A CDT++ VD+ IP NNKG+ ++ ++WLLAR + R Sbjct: 29 IDEYLAAGVHIGTQQKTQNMMKFVYRVRTDGLYVLDIQSTDERIRSIAHFL-SMYDPSRILVVSARQYGQYPATMFSKSVGAVSKVGRFIPGSLTNPVQEGFFEPDVVIVTDPAGDAQVIREAVNVGIPVVALCDTNNMTSNVDLVIPTNNKGRKALSLVYWLLAREIANER 199
BLAST of CF832919 vs. ExPASy Swiss-Prot
Match: RS2_METBF (30S ribosomal protein S2P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps2p PE=3 SV=2) HSP 1 Score: 130.568 bits (327), Expect = 8.832e-30 Identity = 66/174 (37.93%), Postives = 107/174 (61.49%), Query Frame = 2 Query: 47 IQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGT 568 I LAA VH+GT+ M R+V++ R DG+Y++++ T E++++AA+++ + P I+V S+R YGQ F++ ++ GR PG TN F EP ++I+TDP D Q +KEA+ +P +A CDT++ VD+ IP NNKG+ ++ ++WLLAR V ++ T Sbjct: 40 IDEYLAAGVHIGTQQKTQDMMRFVYRVRTDGLYVLDIQSTDERIRVAAKLLSHYD-PSRILVVSSRQYGQHPARMFSRALSTKSMLGRFIPGLLTNPQIHGFFEPDIVIVTDPAGDAQVLKEASSIGVPIVALCDTNNLTSNVDLVIPTNNKGRKALSLVYWLLAREVSRLNST 212
BLAST of CF832919 vs. ExPASy Swiss-Prot
Match: RS2_UNCMA (30S ribosomal protein S2P OS=Uncultured methanogenic archaeon RC-I GN=rps2p PE=3 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 1.506e-29 Identity = 63/168 (37.50%), Postives = 105/168 (62.50%), Query Frame = 2 Query: 59 LAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMR 562 LAA VH+GT+ M++++++ R+DG+Y++++ T E+++ AA+ + + P +++V AR YGQ FA+ A I GR PGT TN + F EP ++++TDP D Q + EA +P +A CDT++ +D+ IP NNKG+ ++ ++WLLAR V + R Sbjct: 25 LAAGVHIGTQQKTEDMKKFIYRVRSDGLYVLDVQSTDERIRAAAKFLSRYD-PANVLVVCARQYGQHPAEMFARAIGARHIVGRFIPGTLTNPVYMFFAEPDVVVVTDPIGDAQAVTEAISIGVPVVAMCDTNNMTSNIDLVIPTNNKGRKALALVYWLLAREVSRER 191
BLAST of CF832919 vs. ExPASy Swiss-Prot
Match: RS2_META3 (30S ribosomal protein S2P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps2p PE=3 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 1.506e-29 Identity = 65/171 (38.01%), Postives = 103/171 (60.23%), Query Frame = 2 Query: 59 LAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI 571 LA+ +H+GT+ M+R++++ R DG+Y++++ KT E++ +AA+ + E P +I+ S R Y + KF + T AGR PGT TN F EP +L L+DPR D Q +KEA IP + CDT+ ++D IP NNKG+ S+ +++L+AR ++ RG I Sbjct: 14 LASGIHIGTQQKTEDMKRFIYRVRADGLYVLDVRKTDERIGLAAKFLSKYE-PEEILAVSRRIYSVGPLKKFGQTTGITTAAGRFVPGTLTNPSSRKFLEPEVLFLSDPRIDRQALKEAIEIGIPIVGMCDTEHLTSFIDFIIPTNNKGRKSVSLVYYLIAREYMKNRGLI 183 The following BLAST results are available for this feature:
BLAST of CF832919 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 199
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832919 ID=CF832919; Name=CF832919; organism=Citrus sinensis; type=EST; length=738bpback to top |