CF832919

Overview
NameCF832919
Unique NameCF832919
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length738
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832919 vs. ExPASy Swiss-Prot
Match: RS2_METMA (30S ribosomal protein S2P OS=Methanosarcina mazei GN=rps2p PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.324e-30
Identity = 69/187 (36.90%), Postives = 112/187 (59.89%), Query Frame = 2
Query:    8 ATVPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGT 568
            A   ++ S     I   LAA VH+GT+     M R+V++ R DG+Y++++  T E++++A++++   + P  I+V S+R YGQ     F++     A+ GR  PG+ TN     F EP ++I+TDP  D Q +KEA+   +P IA CDT++    VD+ IP NNKG+ ++  ++WLLAR V ++  T
Sbjct:   26 AASAKEGSTSLVSIDEYLAAGVHIGTQQKTQDMMRFVYRVRTDGLYVLDIQSTDERIRVASKLLSHYD-PSRILVVSSRQYGQHPARMFSRALGTRAMLGRFIPGSLTNPQIHGFFEPDVIIVTDPAGDAQVLKEASSIGVPVIALCDTNNLTSNVDLVIPTNNKGRKALSLVYWLLAREVSRLNNT 211          
BLAST of CF832919 vs. ExPASy Swiss-Prot
Match: RS2_METB6 (30S ribosomal protein S2P OS=Methanoregula boonei (strain 6A8) GN=rps2p PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.324e-30
Identity = 64/181 (35.36%), Postives = 113/181 (62.43%), Query Frame = 2
Query:   23 QLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRG 565
            +L +    ++  LAA VH+GT+     M++++++ R DG+YI+++ +T  +++  A+ +   E P +I+V ++R YGQ    KFA    A +  GR  PG  TN +   + EP+++++TDP  D Q I EA    IP +A CDT++  ++VD+ IP NNKG+ ++  +++LL R +L++RG
Sbjct:   10 ELKEPLIPVEEYLAAGVHIGTQQKSEDMKKFIYRVRGDGLYILDIRETDARIKTVAKFLTQYEAP-EILVVTSRQYGQYPAKKFADTIGAMSATGRFIPGLLTNPVLDGYIEPKVIVVTDPIGDAQVINEAVQCGIPVVALCDTNNMTKFVDLVIPTNNKGRKALSMIYFLLTREMLRIRG 189          
BLAST of CF832919 vs. ExPASy Swiss-Prot
Match: RS2_METMJ (30S ribosomal protein S2P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps2p PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.035e-30
Identity = 68/184 (36.96%), Postives = 111/184 (60.33%), Query Frame = 2
Query:   23 QLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFN---EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRG 565
            +L +    ++  LAA VH+GT+     M +++++ R DG+YI+++  T E+++ AA+ +   E P  I+V ++R YGQ    KFA      A+ GR  PG  TNQ     N   EP ++++TDP  D Q I EA    IP +A CDT++  +YVD+ IP NNKG+ ++  +++LL + +L++RG
Sbjct:    9 ELKEPLLPVEEYLAAGVHIGTQQKSKDMMKFIYRVRGDGLYILDIQATDERIKTAAKFLSQYE-PSKILVVTSRQYGQYPAKKFADAIGGMAVVGRFIPGMLTNQRLHGLNKYIEPDVVVVTDPIGDSQTIAEAVQVGIPIVALCDTNNMTKYVDVVIPTNNKGRKALSVIYYLLTKELLRLRG 191          
BLAST of CF832919 vs. ExPASy Swiss-Prot
Match: RS2_METHJ (30S ribosomal protein S2P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps2p PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.035e-30
Identity = 63/181 (34.81%), Postives = 115/181 (63.54%), Query Frame = 2
Query:   23 QLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRG 565
            +L++    ++  LAA VH+GT+     M+ ++++ R DG+YI+++ +T E++++AA+ +   + P  I+V ++R YGQ    +FA    A  I GR+ PGT TN +   + EP ++++TDP +D Q I+EA   +IP +A CDT++    VD+ +P NNKG+ ++  +++LL +  L+ +G
Sbjct:    9 ELNEPLVSVEEYLAAGVHIGTQQKSSDMKNFIYRVRGDGLYILDIRETDERIKLAAKFLSQYD-PAKILVVTSRQYGQYPARRFADSIGATPIIGRYIPGTLTNPLLPRYAEPDVVVVTDPVSDLQVIREAIQVSIPVVALCDTNNMTSLVDVVVPTNNKGRKALSMIYFLLTKEFLRHKG 188          
BLAST of CF832919 vs. ExPASy Swiss-Prot
Match: RS2_HALWD (30S ribosomal protein S2P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps2p PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.964e-30
Identity = 68/184 (36.96%), Postives = 109/184 (59.24%), Query Frame = 2
Query:   26 LSQKEAD----IQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRG 565
            +  +EAD    ++  L+A VH+GT+     MER++ + R+DG+Y++++ +T  +++ AA  + A  NP  ++V S+R YG+    KFA    A A  GR  PGT TN     + EP ++++TDP  D Q +KEA    IP IA CD+++     D+ +P NNKG+ ++  ++WLLA   L  RG
Sbjct:   83 MPDEEADLLIPVEDYLSAGVHIGTQQKTSDMERFIHRVRDDGLYVLDVSQTDSRIRTAANFL-ANYNPDQMLVTSSRQYGRFPAKKFADAVGARARTGRFIPGTLTNPDYAGYIEPDVVVVTDPIGDAQAVKEAITVGIPVIAMCDSNNQTSNTDLVVPTNNKGRRALSVVYWLLANETLDRRG 265          
BLAST of CF832919 vs. ExPASy Swiss-Prot
Match: RS2_METAC (30S ribosomal protein S2P OS=Methanosarcina acetivorans GN=rps2p PE=3 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 5.178e-30
Identity = 66/174 (37.93%), Postives = 108/174 (62.07%), Query Frame = 2
Query:   47 IQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGT 568
            I   LAA VH+GT+     M R+V++ R DG+Y++++  T E++++A++++   + P  I+V S+R YGQ     F++     A+ GR  PG+ TN     F EP ++I+TDP  D Q +KEA+   +P +A CDT++    VD+ IP NNKG+ ++  ++WLLAR V ++  T
Sbjct:   40 IDEYLAAGVHIGTQQKTQDMMRFVYRVRTDGLYVLDIQSTDERIRVASKLLSHYD-PARILVVSSRQYGQHPARMFSRALGTRAMLGRFIPGSLTNPQIHGFFEPDVIIVTDPAGDAQVLKEASSIGVPVVALCDTNNLTSNVDLVIPTNNKGRKALSLVYWLLAREVSRLNDT 212          
BLAST of CF832919 vs. ExPASy Swiss-Prot
Match: RS2_METBU (30S ribosomal protein S2P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps2p PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.762e-30
Identity = 68/172 (39.53%), Postives = 105/172 (61.05%), Query Frame = 2
Query:   47 IQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMR 562
            I   LAA VH+GT+     M ++V++ R DG+Y++++  T E+++  A  + ++ +P  I+V SAR YGQ     F+K   A +  GR  PG+ TN +Q  F EP ++I+TDP  D Q I+EA    IP +A CDT++    VD+ IP NNKG+ ++  ++WLLAR +   R
Sbjct:   29 IDEYLAAGVHIGTQQKTQNMMKFVYRVRTDGLYVLDIQSTDERIRSIAHFL-SMYDPSRILVVSARQYGQYPATMFSKSVGAVSKVGRFIPGSLTNPVQEGFFEPDVVIVTDPAGDAQVIREAVNVGIPVVALCDTNNMTSNVDLVIPTNNKGRKALSLVYWLLAREIANER 199          
BLAST of CF832919 vs. ExPASy Swiss-Prot
Match: RS2_METBF (30S ribosomal protein S2P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps2p PE=3 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 8.832e-30
Identity = 66/174 (37.93%), Postives = 107/174 (61.49%), Query Frame = 2
Query:   47 IQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGT 568
            I   LAA VH+GT+     M R+V++ R DG+Y++++  T E++++AA+++   + P  I+V S+R YGQ     F++     ++ GR  PG  TN     F EP ++I+TDP  D Q +KEA+   +P +A CDT++    VD+ IP NNKG+ ++  ++WLLAR V ++  T
Sbjct:   40 IDEYLAAGVHIGTQQKTQDMMRFVYRVRTDGLYVLDIQSTDERIRVAAKLLSHYD-PSRILVVSSRQYGQHPARMFSRALSTKSMLGRFIPGLLTNPQIHGFFEPDIVIVTDPAGDAQVLKEASSIGVPIVALCDTNNLTSNVDLVIPTNNKGRKALSLVYWLLAREVSRLNST 212          
BLAST of CF832919 vs. ExPASy Swiss-Prot
Match: RS2_UNCMA (30S ribosomal protein S2P OS=Uncultured methanogenic archaeon RC-I GN=rps2p PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.506e-29
Identity = 63/168 (37.50%), Postives = 105/168 (62.50%), Query Frame = 2
Query:   59 LAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMR 562
            LAA VH+GT+     M++++++ R+DG+Y++++  T E+++ AA+ +   + P +++V  AR YGQ     FA+   A  I GR  PGT TN +   F EP ++++TDP  D Q + EA    +P +A CDT++    +D+ IP NNKG+ ++  ++WLLAR V + R
Sbjct:   25 LAAGVHIGTQQKTEDMKKFIYRVRSDGLYVLDVQSTDERIRAAAKFLSRYD-PANVLVVCARQYGQHPAEMFARAIGARHIVGRFIPGTLTNPVYMFFAEPDVVVVTDPIGDAQAVTEAISIGVPVVAMCDTNNMTSNIDLVIPTNNKGRKALALVYWLLAREVSRER 191          
BLAST of CF832919 vs. ExPASy Swiss-Prot
Match: RS2_META3 (30S ribosomal protein S2P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps2p PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.506e-29
Identity = 65/171 (38.01%), Postives = 103/171 (60.23%), Query Frame = 2
Query:   59 LAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI 571
            LA+ +H+GT+     M+R++++ R DG+Y++++ KT E++ +AA+ +   E P +I+  S R Y    + KF + T     AGR  PGT TN     F EP +L L+DPR D Q +KEA    IP +  CDT+    ++D  IP NNKG+ S+  +++L+AR  ++ RG I
Sbjct:   14 LASGIHIGTQQKTEDMKRFIYRVRADGLYVLDVRKTDERIGLAAKFLSKYE-PEEILAVSRRIYSVGPLKKFGQTTGITTAAGRFVPGTLTNPSSRKFLEPEVLFLSDPRIDRQALKEAIEIGIPIVGMCDTEHLTSFIDFIIPTNNKGRKSVSLVYYLIAREYMKNRGLI 183          
The following BLAST results are available for this feature:
BLAST of CF832919 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
RS2_METMA2.324e-3036.9030S ribosomal protein S2P OS=Methanosarcina mazei ... [more]
RS2_METB62.324e-3035.3630S ribosomal protein S2P OS=Methanoregula boonei ... [more]
RS2_METMJ3.035e-3036.9630S ribosomal protein S2P OS=Methanoculleus marisn... [more]
RS2_METHJ3.035e-3034.8130S ribosomal protein S2P OS=Methanospirillum hung... [more]
RS2_HALWD3.964e-3036.9630S ribosomal protein S2P OS=Haloquadratum walsbyi... [more]
RS2_METAC5.178e-3037.9330S ribosomal protein S2P OS=Methanosarcina acetiv... [more]
RS2_METBU6.762e-3039.5330S ribosomal protein S2P OS=Methanococcoides burt... [more]
RS2_METBF8.832e-3037.9330S ribosomal protein S2P OS=Methanosarcina barker... [more]
RS2_UNCMA1.506e-2937.5030S ribosomal protein S2P OS=Uncultured methanogen... [more]
RS2_META31.506e-2938.0130S ribosomal protein S2P OS=Methanococcus aeolicu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02K17_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02K17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832919 ID=CF832919; Name=CF832919; organism=Citrus sinensis; type=EST; length=738bp
CGGAACAGCAACGGTCCCGAGGCAGCTCTCTCAGAAAGAGGCTGACATTC
AGATGATGTTAGCCGCCGAAGTTCATTTGGGTACTAAGAACTGTGACTTC
CAAATGGAACGTTACGTGTTCAAGCGCCGAAACGATGGAATTTATATTAT
CAATCTTGGCAAGACTTGGGAGAAGCTACAGATGGCGGCCAGGGTTATCG
TAGCCATTGAAAACCCTGGGGACATTATTGTCCAATCAGCTAGACCCTAT
GGACAGCGAGCTGTGTTGAAGTTTGCAAAGTACACTCACGCCCATGCCAT
TGCTGGCAGGCACACTCCTGGTACATTTACCAATCAAATGCAAACATCAT
TCAATGAGCCCCGACTTCTCATTCTAACAGATCCACGAACAGACCATCAG
CCAATTAAGGAAGCTGCTCTTGGAAACATTCCCACCATTGCCTTTTGTGA
CACTGACTCACCTATGCGTTATGTTGATATTGGCATTCCTGCCAATAACA
AGGGCAAACACAGCATTGGGTGTCTCTTCTGGCTTTTGGCTAGAATGGTT
CTCCAGATGCGCGGCACTATTCGTCCTGGCCACAAGTGGGATGTGATGGT
CGATCTGTTCTTCTACAGGGAGCCAGAAGAAACCAAGCAGGCTGAAGAAG
AAGAAACTGCTGCTATTGATTATGCTACAGCAGAGTACAGCATGAATCTT
ACCAGTGGTGAGCAATGGCCTTCCCAAATTGCTGATGG
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