CF832937

Overview
NameCF832937
Unique NameCF832937
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length501
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832937 vs. ExPASy Swiss-Prot
Match: TIP2_TOBAC (Probable aquaporin TIP-type RB7-18C OS=Nicotiana tabacum PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 1.867e-19
Identity = 61/166 (36.75%), Postives = 87/166 (52.41%), Query Frame = 3
Query:    3 IFVLFYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLVAAVIYNQDKAWDDQWLFWVGP 497
            +FV     A ISGGH+NPAVT GL +   ++++    Y +AQ LG+     L+K           G    +A G +   G+  EII TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA  P +G  +NPARS   AV+      +   W++W GP
Sbjct:   67 LFVGVSIAANISGGHLNPAVTLGLAVGGNITILTGFFYWIAQLLGSTVACLLLKYVTNGLAVPTHG----VAAGLNGFQGVVMEIIITFALVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVAGD---FSQNWIYWAGP 221          
BLAST of CF832937 vs. ExPASy Swiss-Prot
Match: MIP_RANPI (Lens fiber major intrinsic protein OS=Rana pipiens PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.867e-19
Identity = 56/155 (36.13%), Postives = 82/155 (52.90%), Query Frame = 3
Query:   33 ISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLVAAVIYNQDKAWDDQWLFWVGP 497
            +SG HINPAVTF   +  ++SL RA+ Y+ AQ LGA++G  ++     +   R     N L  G S G     EI  T   V  +F+  D +R+ R   V     L IGF++ + HL  +  TG  +NPARS   AV+    + + + W++WVGP
Sbjct:   62 VSGAHINPAVTFAFLIGSQMSLFRAIFYIAAQLLGAVAGAAVLYGVTPA-AIRGNLALNTLHPGVSLGQATTVEIFLTLQFVLCIFATYDERRNGRLGSV----SLAIGFSLTLGHLFGLYYTGASMNPARSFAPAVL---TRNFTNHWVYWVGP 208          
BLAST of CF832937 vs. ExPASy Swiss-Prot
Match: TIP1_TOBAC (Probable aquaporin TIP-type RB7-5A OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.438e-19
Identity = 61/166 (36.75%), Postives = 87/166 (52.41%), Query Frame = 3
Query:    3 IFVLFYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLVAAVIYNQDKAWDDQWLFWVGP 497
            +FV     A ISGGH+NPAVT GL +   ++++    Y +AQ LG+     L+K           G    +A G +   G+  EII TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA  P +G  +NPARS   AV+      +   W++W GP
Sbjct:   67 LFVGVSIAANISGGHLNPAVTLGLAVGGNITILTGFFYWIAQLLGSTVACLLLKYVTNGLAVPTHG----VAAGLNGLQGVVMEIIITFALVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVAGD---FSQNWIYWAGP 221          
BLAST of CF832937 vs. ExPASy Swiss-Prot
Match: TIPA_PHAVU (Probable aquaporin TIP-type alpha OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 5.431e-19
Identity = 57/166 (34.34%), Postives = 87/166 (52.41%), Query Frame = 3
Query:    3 IFVLFYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLVAAVIYNQDKAWDDQWLFWVGP 497
            +F     +  +SGGH+NPAV+FG  +  ++S++RAV Y +AQ LG+I    +++    +           ++ G   G     E++ TF L+YTV+ +A DPKR A    V  +APL IG  V    L   P  G  +NPA +   +++  Q   W   W+FWVGP
Sbjct:   69 LFAAVSASMHVSGGHVNPAVSFGALIGGRISVIRAVYYWIAQLLGSIVAALVLRLVTNNMRP----SGFHVSPGVGVGHMFILEVVMTFGLMYTVYGTAIDPKRGA----VSYIAPLAIGLIVGANILVGGPFDGACMNPALAFGPSLVGWQ---WHQHWIFWVGP 223          
BLAST of CF832937 vs. ExPASy Swiss-Prot
Match: AQPZ_GLOVI (Aquaporin Z OS=Gloeobacter violaceus GN=aqpZ PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 5.431e-19
Identity = 56/172 (32.56%), Postives = 94/172 (54.65%), Query Frame = 3
Query:    3 IFVLFYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVK--AFQKSYYTRYGGGAN-----ELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLVAAVIYNQDKAWDDQWLFWVGP 497
            +  + +    ISG HINPAV+ GL+ A++      + Y+ AQ LG I+G G++   A  K+ ++  GG A+         GY+    L  E++ TF+ +  +  +TD +R+ +       AP+ IG ++ ++HL +IP+T T +NPARS     ++  D A  + WLFW+ P
Sbjct:   49 LLTMAFAIGHISGCHINPAVSIGLWAAKRFPATELLPYIAAQVLGGIAGAGVLYLIAGGKAGFSLSGGFASNGYGLHSPGGYTLLACLVCEVVMTFMFLMIILGSTD-RRAPKG-----FAPIAIGLSLTLIHLISIPVTNTSVNPARS-TGPALFVGDWAIAELWLFWLAP 213          
BLAST of CF832937 vs. ExPASy Swiss-Prot
Match: MIP_CAVPO (Lens fiber major intrinsic protein OS=Cavia porcellus GN=MIP PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 7.093e-19
Identity = 55/155 (35.48%), Postives = 82/155 (52.90%), Query Frame = 3
Query:   33 ISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLVAAVIYNQDKAWDDQWLFWVGP 497
            ISG H+NPAVTF   +  ++SL+RA  YM AQ LGA++G  ++ +       R     N L  G S       EI  T   V  +F+  D +R+ R   V     L +GF++ + HL  +  TG G+NPARS   A++    + + + W++WVGP
Sbjct:   62 ISGAHVNPAVTFXFLVGSQMSLLRAFCYMAAQLLGAVAGAAVLYSVTPP-AVRGNLALNTLHAGVSVXQATTVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAIL---TRNFTNHWVYWVGP 208          
BLAST of CF832937 vs. ExPASy Swiss-Prot
Match: TIP22_MAIZE (Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.210e-18
Identity = 65/169 (38.46%), Postives = 90/169 (53.25%), Query Frame = 3
Query:    3 IFVLFYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVK--AFQKSYYTR-YGGGANELADGYSTGVGLAAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLVAAVIYNQDKAWDDQWLFWVGP 497
            +FV     A  SGGH+NPAVTFGL +   ++++  + Y VAQ LGA     L++     K+  T    GG  EL        G+  EI+ TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA  P +G  +NPARS   AV       +   W++WVGP
Sbjct:   67 LFVGVSVAANTSGGHLNPAVTFGLAVGGHITVLTGLFYWVAQLLGASVACLLLRFVTHGKAIPTHGVSGGTTELE-------GVVFEIVITFALVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVAAAD---FAGNWVYWVGP 221          
BLAST of CF832937 vs. ExPASy Swiss-Prot
Match: MIP_HUMAN (Lens fiber major intrinsic protein OS=Homo sapiens GN=MIP PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.210e-18
Identity = 54/155 (34.84%), Postives = 81/155 (52.26%), Query Frame = 3
Query:   33 ISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLVAAVIYNQDKAWDDQWLFWVGP 497
            ISG H+NPAVTF   +  ++SL+RA  YM AQ LGA++G  ++ +       R     N L    S G     EI  T   V  +F+  D +R+ +   V     L +GF++ + HL  +  TG G+NPARS   A++      + + W++WVGP
Sbjct:   62 ISGAHVNPAVTFAFLVGSQMSLLRAFCYMAAQLLGAVAGAAVLYSVTPP-AVRGNLALNTLHPAVSVGQATTVEIFLTLQFVLCIFATYDERRNGQLGSV----ALAVGFSLALGHLFGMYYTGAGMNPARSFAPAILTGN---FTNHWVYWVGP 208          
BLAST of CF832937 vs. ExPASy Swiss-Prot
Match: AQPZ_PSEAE (Aquaporin Z OS=Pseudomonas aeruginosa GN=aqpZ PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.210e-18
Identity = 56/172 (32.56%), Postives = 90/172 (52.33%), Query Frame = 3
Query:    3 IFVLFYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVG---LVKAFQKSYYTRYGGGANELAD----GYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLVAAVIYNQDKAWDDQWLFWVGP 497
            +  + Y    ISG H+NPAV+ GL++  +    + + Y+VAQ LG ++  G   L+ + +  +    G  +N   +    GYS    L +E++ T + +  +  AT  KR+ +       AP+ IG  + ++HL +IP+T T +NPARS  A  +Y  D A    WLFWV P
Sbjct:   46 VLTMAYAIGPISGAHLNPAVSVGLWVGGRFPASQLLPYVVAQVLGGLAAGGVLYLIASGKAGFDLAAGFASNGYGEHSPGGYSLQAALVSEVVLTGMFLLIILGATS-KRAPQG-----FAPIAIGLTLTLIHLISIPVTNTSVNPARS-TAVALYVGDWAVSQLWLFWVAP 210          
BLAST of CF832937 vs. ExPASy Swiss-Prot
Match: AQPZ_CHRVO (Aquaporin Z OS=Chromobacterium violaceum GN=aqpZ PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.064e-18
Identity = 59/180 (32.78%), Postives = 84/180 (46.67%), Query Frame = 3
Query:    3 IFVLFYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAIS-------------GVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLVAAVIYNQDKAWDDQ--WLFWVGP 497
            +  + Y    ISG H+NPAV+ GL+   +    +   Y+VAQ LGAI+             G  + K F  + Y  +  G      GYS    L  E++ T   +  +  ATD +  A        APL IG A+ ++HL +IP+T T +NPARS   A+       W  Q  WLFW+ P
Sbjct:   46 VVTMAYAIGHISGCHLNPAVSIGLWAGGRFPAGQLAPYIVAQVLGAIAAGAVLYVIASGGAGFDVAKGFASNGYAEHSPG------GYSLLAALVCEVVMTMFFLLVIMGATDKRAPAG------FAPLAIGLALTLIHLISIPVTNTSVNPARSTGVALFVG---GWAVQQLWLFWLAP 210          
The following BLAST results are available for this feature:
BLAST of CF832937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 164
Match NameE-valueIdentityDescription
TIP2_TOBAC1.867e-1936.75Probable aquaporin TIP-type RB7-18C OS=Nicotiana t... [more]
MIP_RANPI1.867e-1936.13Lens fiber major intrinsic protein OS=Rana pipiens... [more]
TIP1_TOBAC2.438e-1936.75Probable aquaporin TIP-type RB7-5A OS=Nicotiana ta... [more]
TIPA_PHAVU5.431e-1934.34Probable aquaporin TIP-type alpha OS=Phaseolus vul... [more]
AQPZ_GLOVI5.431e-1932.56Aquaporin Z OS=Gloeobacter violaceus GN=aqpZ PE=3 ... [more]
MIP_CAVPO7.093e-1935.48Lens fiber major intrinsic protein OS=Cavia porcel... [more]
TIP22_MAIZE1.210e-1838.46Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1[more]
MIP_HUMAN1.210e-1834.84Lens fiber major intrinsic protein OS=Homo sapiens... [more]
AQPZ_PSEAE1.210e-1832.56Aquaporin Z OS=Pseudomonas aeruginosa GN=aqpZ PE=3... [more]
AQPZ_CHRVO2.064e-1832.78Aquaporin Z OS=Chromobacterium violaceum GN=aqpZ P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02L05_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02L05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832937 ID=CF832937; Name=CF832937; organism=Citrus sinensis; type=EST; length=501bp
TGATCTTTGTCCTCTTTTACTGCACCGCCGGTATCTCAGGTGGTCACATT
AACCCGGCAGTGACGTTCGGACTATTCTTGGCCCGCAAGGTGTCGTTGGT
CCGTGCTGTGATGTACATGGTGGCGCAGTGCCTTGGTGCAATCTCCGGTG
TTGGGTTGGTCAAGGCTTTCCAAAAATCTTACTACACAAGGTACGGAGGT
GGGGCCAACGAGCTGGCCGATGGGTACAGCACAGGCGTTGGATTGGCCGC
CGAGATCATCGGCACCTTTGTGTTGGTTTACACTGTCTTCTCGGCCACTG
ATCCCAAAAGAAGCGCCAGAGACTCCCATGTCCCCGTTTTGGCACCGCTC
CCCATTGGATTTGCTGTGTTCATGGTACACTTGGCCACAATCCCTATCAC
TGGCACTGGCATTAACCCAGCAAGGAGTCTCGTGGCCGCTGTTATTTACA
ACCAGGACAAGGCTTGGGATGATCAATGGCTCTTCTGGGTTGGACCCTTC
A
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