CF832937

Overview
NameCF832937
Unique NameCF832937
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length501
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832937 vs. ExPASy Swiss-Prot
Match: TIP42_ORYSJ (Probable aquaporin TIP4-2 OS=Oryza sativa subsp. japonica GN=TIP4-2 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 4.303e-16
Identity = 59/171 (34.50%), Postives = 86/171 (50.29%), Query Frame = 3
Query:    3 IFVLFYCTAG--ISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGA---NELADGYSTGVGLAAEIIGTFVLVYTVFSA-TDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLVAAVIYNQDKAWDDQWLFWVGP 497
            + V    TAG  +SGGH+NPAVT  L +   ++L R+ +Y+ AQ  G+     L++          GG A   + LADG     G+AAE + TF L+  + +   DP+R+A     P   PL  G  V    +A   +TG  +NPARS   A+   +   W   W++WVGP
Sbjct:   69 LVVAVLATAGFHVSGGHLNPAVTLSLAVGGHITLFRSALYVAAQLAGSSLACLLLRCLT-------GGAATPVHALADGVGPVQGVAAEAVFTFTLLLVICATILDPRRAA----PPGTGPLLTGLLVGANTVAGGALTGASMNPARSFGPALATGE---WAHHWVYWVGP 225          
BLAST of CF832937 vs. ExPASy Swiss-Prot
Match: AQPZ_BRAJA (Aquaporin Z OS=Bradyrhizobium japonicum GN=aqpZ PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.303e-16
Identity = 55/178 (30.90%), Postives = 80/178 (44.94%), Query Frame = 3
Query:    3 IFVLFYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAI-------------SGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLVAAVIYNQDKAWDDQWLFWVGP 497
            +  + Y    ISG H+NPAVT GL    +    + + Y++AQ  GAI              G  + K F  + Y  +  G       YS       E++ T + ++ +  AT  +  A        APL IG A+ M+HL +IP+T T +NPARS     ++    A    WLFWV P
Sbjct:   48 VVTMAYAIGHISGCHLNPAVTVGLAAGGRFPAGQILPYVIAQVCGAIVAAELLYIIASGAPGFDVTKGFASNGYDAHSPGQ------YSMMACFLTEVVMTMMFLFIIMGATHGRAPAG------FAPLAIGLALVMIHLVSIPVTNTSVNPARS-TGPALFVGGWAMAQLWLFWVAP 212          
BLAST of CF832937 vs. ExPASy Swiss-Prot
Match: TIP41_MAIZE (Aquaporin TIP4-1 OS=Zea mays GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.620e-16
Identity = 56/161 (34.78%), Postives = 82/161 (50.93%), Query Frame = 3
Query:   24 TAG--ISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLVAAVIYNQDKAWDDQWLFWVGP 497
            TAG  +SGGH+NPAVT GL +   ++ +RAV+Y+ AQ L + +   L++       T      + L  G S   GL  E+I TF L++  ++   DP+     S V  + PL  G  V    LA    TG  +NPARS   A+       W + W++W+GP
Sbjct:   78 TAGFHVSGGHLNPAVTVGLMVRGHITKLRAVLYVAAQLLASSAACVLLRFLSGGMVT----PVHALGRGISPMQGLVMEVILTFSLLFVTYAMILDPR-----SQVRAIGPLLTGLIVGANSLAGGNFTGASMNPARSFGPALATGD---WTNHWVYWIGP 226          
BLAST of CF832937 vs. ExPASy Swiss-Prot
Match: AQPA_DICDI (Aquaporin A OS=Dictyostelium discoideum GN=aqpA PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 7.340e-16
Identity = 50/162 (30.86%), Postives = 82/162 (50.62%), Query Frame = 3
Query:   12 LFYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLVAAVIYNQDKAWDDQWLFWVGP 497
            L +  +G+SG ++NPAVT    L+ +V L+ ++ Y+ AQ LG I+G G++     + Y R   G   LA G +TG     E++ T +L   V   +    +  D  +  +AP  IG A+F+        +G  +NP R L  ++I      W   W++W+GP
Sbjct:   83 LIWAVSGVSGCNLNPAVTLANLLSGRVGLIDSLYYVAAQILGCIAGAGILYGCLPNMY-RIDLGVPHLAPGMNTGQAFLMEMMLTSILCLCVLGTS--VFNVWDRRLNRIAPFAIGLALFIGVAIGFNFSGGALNPVRVLGPSII---SGVWSHHWVYWLGP 238          
BLAST of CF832937 vs. ExPASy Swiss-Prot
Match: AQP6_RAT (Aquaporin-6 OS=Rattus norvegicus GN=Aqp6 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 7.340e-16
Identity = 58/159 (36.48%), Postives = 78/159 (49.06%), Query Frame = 3
Query:   36 SGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGG-----GANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLVAAVIYNQDKAWDDQWLFWVGP 497
            SG H NPAVT    +   +SL RAV Y+ AQ  GA  G  L+      Y    GG     G N + +  STG  +A E++ T  LV  VF++ D +++             IG +V + HL  I  TG  +NPARS   AVI  +   +   W+FWVGP
Sbjct:   74 SGAHANPAVTLAYLVGSHISLPRAVAYIAAQLAGATVGAALL------YGVTPGGVRETLGVNVVHNSTSTGQAVAVELVLTLQLVLCVFASMDSRQTLGS------PAAMIGTSVALGHLIGIYFTGCSMNPARSFGPAVIVGK---FAVHWIFWVGP 217          
BLAST of CF832937 vs. ExPASy Swiss-Prot
Match: AQP6_MOUSE (Aquaporin-6 OS=Mus musculus GN=Aqp6 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 7.340e-16
Identity = 57/159 (35.85%), Postives = 79/159 (49.69%), Query Frame = 3
Query:   36 SGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGG-----GANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLVAAVIYNQDKAWDDQWLFWVGP 497
            SG H NPAVT    +   +SL RA+ Y+ AQ  GA +G  L+      Y    GG     G N + +  STG  +A E++ T  LV  VF++ D +++             IG +V + HL  I  TG  +NPARS   AVI  +   +   W+FWVGP
Sbjct:   74 SGAHANPAVTLAYLVGSHISLPRAMAYIAAQLAGATAGAALL------YGVTPGGIRETLGVNVVHNSTSTGQAVAVELVLTLQLVLCVFASMDGRQTLAS------PAAMIGTSVALGHLIGIYFTGCSMNPARSFGPAVIVGK---FAVHWIFWVGP 217          
BLAST of CF832937 vs. ExPASy Swiss-Prot
Match: AQPB_DICDI (Aquaporin B OS=Dictyostelium discoideum GN=wacA PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 9.586e-16
Identity = 54/167 (32.34%), Postives = 83/167 (49.70%), Query Frame = 3
Query:   12 LFYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVY-----TVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLVAAVIYNQDKAWDDQWLFWVGP 497
            + +  +GISG  +NPAVT G     ++ ++  + +++ QC+GA+ G G++KA   ++Y R    A  LA G +   G   E++ T  LV+      V++  DPK S        +APL IG AV          TG  +NPARS   AV       W   +++W GP
Sbjct:   80 IIWSISGISGCQLNPAVTVGCVTTGRMGILNGIAFIIFQCVGALVGAGMMKASLPTFYER-DLSATTLATGVNVARGFFLEMVTTSFLVFVVLGVAVYNEWDPKISR-------VAPLAIGCAVIAGVGFLNLFTGGSLNPARSFGPAVF---SDTWHRHYIYWFGP 235          
BLAST of CF832937 vs. ExPASy Swiss-Prot
Match: AQP8_HUMAN (Aquaporin-8 OS=Homo sapiens GN=AQP8 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.252e-15
Identity = 56/158 (35.44%), Postives = 80/158 (50.63%), Query Frame = 3
Query:   33 ISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAF--QKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTV-FSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLVAAVIYNQDKAWDDQWLFWVGP 497
            ISGGH NPAV+    L   ++LV  + Y V+Q LG + G  L KA   ++ ++   G     + +       L AEII T +L   V   A + K          LAP  IGFAV +  LA  P++G  +NPAR+   AV+ N    W+  W++W+GP
Sbjct:   86 ISGGHFNPAVSLAAMLIGGLNLVMLLPYWVSQLLGGMLGAALAKAVSPEERFWNASGAAFVTVQEQGQVAGALVAEIILTTLLALAVCMGAINEKTKG------PLAPFSIGFAVTVDILAGGPVSGGCMNPARAFGPAVVANH---WNFHWIYWLGP 234          
BLAST of CF832937 vs. ExPASy Swiss-Prot
Match: TIP43_MAIZE (Aquaporin TIP4-3 OS=Zea mays GN=TIP4-3 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.643e-15
Identity = 55/168 (32.74%), Postives = 84/168 (50.00%), Query Frame = 3
Query:    3 IFVLFYCTAG--ISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSA-TDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLVAAVIYNQDKAWDDQWLFWVGP 497
            + V    TAG  ISGGH+NPAVT  L +   V+L R+ +Y+ AQ L + +   L++       T      + LA+G     G+ AE + TF L++ +++   DP++      +P   PL  G  V    +A   ++G  +NPARS   AV       W   W++WVGP
Sbjct:   64 LVVAVIATAGFHISGGHVNPAVTLSLAVGGHVTLFRSSLYIAAQMLASSAACFLLRWLTGGLAT----PVHALAEGVGPLQGVVAEAVFTFSLLFVIYATILDPRKL-----LPGAGPLLTGLLVGANSVAGAALSGASMNPARSFGPAV---ASGVWTHHWVYWVGP 219          
BLAST of CF832937 vs. ExPASy Swiss-Prot
Match: TIP42_MAIZE (Aquaporin TIP4-2 OS=Zea mays GN=TIP4-2 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.361e-14
Identity = 53/161 (32.92%), Postives = 80/161 (49.69%), Query Frame = 3
Query:   24 TAG--ISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLVAAVIYNQDKAWDDQWLFWVGP 497
            TAG  +SGGH+NPAVT G+ +   ++ +RA++Y+ AQ L +     L++       T      + L  G     GL  E+I TF L++  ++   DP+     S V  + PL  G  V    LA    TG  +NPARS   A+       W + W++W+GP
Sbjct:   80 TAGFHVSGGHLNPAVTVGILVRGHITKLRALLYVAAQLLASSLACILLRYLSGGMVT----PVHALGAGIRPMQGLVMEVILTFSLLFVTYAMILDPR-----SQVRTIGPLLTGLIVGANSLAGGNFTGASMNPARSFGPAMATG---VWTNHWVYWIGP 228          
The following BLAST results are available for this feature:
BLAST of CF832937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 164
Match NameE-valueIdentityDescription
TIP42_ORYSJ4.303e-1634.50Probable aquaporin TIP4-2 OS=Oryza sativa subsp. j... [more]
AQPZ_BRAJA4.303e-1630.90Aquaporin Z OS=Bradyrhizobium japonicum GN=aqpZ PE... [more]
TIP41_MAIZE5.620e-1634.78Aquaporin TIP4-1 OS=Zea mays GN=TIP4-1 PE=2 SV=1[more]
AQPA_DICDI7.340e-1630.86Aquaporin A OS=Dictyostelium discoideum GN=aqpA PE... [more]
AQP6_RAT7.340e-1636.48Aquaporin-6 OS=Rattus norvegicus GN=Aqp6 PE=1 SV=1[more]
AQP6_MOUSE7.340e-1635.85Aquaporin-6 OS=Mus musculus GN=Aqp6 PE=2 SV=1[more]
AQPB_DICDI9.586e-1632.34Aquaporin B OS=Dictyostelium discoideum GN=wacA PE... [more]
AQP8_HUMAN1.252e-1535.44Aquaporin-8 OS=Homo sapiens GN=AQP8 PE=2 SV=2[more]
TIP43_MAIZE3.643e-1532.74Aquaporin TIP4-3 OS=Zea mays GN=TIP4-3 PE=2 SV=1[more]
TIP42_MAIZE2.361e-1432.92Aquaporin TIP4-2 OS=Zea mays GN=TIP4-2 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02L05_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02L05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832937 ID=CF832937; Name=CF832937; organism=Citrus sinensis; type=EST; length=501bp
TGATCTTTGTCCTCTTTTACTGCACCGCCGGTATCTCAGGTGGTCACATT
AACCCGGCAGTGACGTTCGGACTATTCTTGGCCCGCAAGGTGTCGTTGGT
CCGTGCTGTGATGTACATGGTGGCGCAGTGCCTTGGTGCAATCTCCGGTG
TTGGGTTGGTCAAGGCTTTCCAAAAATCTTACTACACAAGGTACGGAGGT
GGGGCCAACGAGCTGGCCGATGGGTACAGCACAGGCGTTGGATTGGCCGC
CGAGATCATCGGCACCTTTGTGTTGGTTTACACTGTCTTCTCGGCCACTG
ATCCCAAAAGAAGCGCCAGAGACTCCCATGTCCCCGTTTTGGCACCGCTC
CCCATTGGATTTGCTGTGTTCATGGTACACTTGGCCACAATCCCTATCAC
TGGCACTGGCATTAACCCAGCAAGGAGTCTCGTGGCCGCTGTTATTTACA
ACCAGGACAAGGCTTGGGATGATCAATGGCTCTTCTGGGTTGGACCCTTC
A
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