CF832937

Overview
NameCF832937
Unique NameCF832937
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length501
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832937 vs. ExPASy Swiss-Prot
Match: TIP51_MAIZE (Aquaporin TIP5-1 OS=Zea mays GN=TIP5-1 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.443e-11
Identity = 53/174 (30.46%), Postives = 79/174 (45.40%), Query Frame = 3
Query:    3 IFVLFYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLG---AISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYT--VFSATDPKR----SARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLVAAVIYNQDKAWDDQWLFWVGP 497
            +F      A +SGGH+NPAVTF   +  ++ +  A+ Y  +Q LG   A   + L  A ++   TR       +A   +   G   E + TF+LVYT  V    +P+       R+     L  L +G       LA   +TG  +NPARS   AV+    K   +Q ++W GP
Sbjct:   69 LFAAVLIAADVSGGHVNPAVTFAYAIGGRIGVPSAMFYWASQLLGATFACLSLNLFSAGEEVPTTR-------IAVAMTGFGGAVLEGVLTFLLVYTVHVVGEREPRSRGGDGKREFAATALGALAVGLTQGAFVLAAGALTGASMNPARSFGPAVVSGHFK---NQAVYWAGP 232          
BLAST of CF832937 vs. ExPASy Swiss-Prot
Match: NIP23_MAIZE (Aquaporin NIP2-3 OS=Zea mays GN=NIP2-3 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.443e-11
Identity = 50/170 (29.41%), Postives = 78/170 (45.88%), Query Frame = 3
Query:    3 IFVLFYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVG-----LAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLVAAVIYNQDKAWDDQWLFWVGP 497
            + V+ Y T  ISG H+NPAVT      R    ++   Y  AQ  GA+    ++KA  +               G +T  G     LA EI+ TF +++   +     R+     V  LA L +G AV +  +   P++G  +NPAR+L  AV  N    +   W++++GP
Sbjct:   98 VTVMIYATGHISGAHMNPAVTLSFACFRHFPWIQVPFYWAAQFTGAMCAAFVLKAVLQPI----------AVIGTTTPSGPHWHALAIEIVVTFNMMFVTCAVATDSRA-----VGELAGLAVGSAVCITSIFAGPVSGGSMNPARTLAPAVASN---VFTGLWIYFLGP 249          
BLAST of CF832937 vs. ExPASy Swiss-Prot
Match: NIP1_NICAL (Probable aquaporin NIP-type OS=Nicotiana alata PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.109e-11
Identity = 48/170 (28.24%), Postives = 82/170 (48.24%), Query Frame = 3
Query:    3 IFVLFYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVG----LVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLVAAVIYNQDKAWDDQWLFWVGP 497
            + V+ Y    ISG H NPAVT    +  +    +  +Y++AQ +G+I   G    L     ++Y+     G+N        G  LA EII +F+L++ +   ATD      D  +  +A + +G  + +      PI+G  +NPARS+  A++ +    +   W++ VGP
Sbjct:   85 VMVMVYTVGYISGAHFNPAVTITFSIFGRFPWKQVPLYIIAQLMGSILASGTLALLFDVTPQAYFGTVPVGSN--------GQSLAIEIIISFLLMFVISGVATD------DRAIGQVAGIAVGMTITLNVFVAGPISGASMNPARSIGPAIVKH---VYTGLWVYVVGP 237          
BLAST of CF832937 vs. ExPASy Swiss-Prot
Match: NIP11_MAIZE (Aquaporin NIP1-1 OS=Zea mays GN=NIP1-1 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 9.285e-11
Identity = 47/168 (27.98%), Postives = 75/168 (44.64%), Query Frame = 3
Query:    3 IFVLFYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTG---VGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLVAAVIYNQDKAWDDQWLFWVGP 497
            + V+ Y    ISG H NPAVT     + +    +   Y++AQ LGA    G ++         +GG          TG     L  EII TF L++ +       R+     +  LA L +G  + +  L   P++G  +NPARS+  A++  +   +   W++ VGP
Sbjct:   87 VMVMVYAVGHISGAHFNPAVTLAFATSGRFPWRQLPAYVLAQMLGATLASGTLRLM-------FGGRHEHFPGTLPTGSEVQSLVIEIITTFYLMFVISGVATDNRA-----IGELAGLAVGATILLNVLIAGPVSGASMNPARSVGPALVSGE---YTSIWVYVVGP 239          
The following BLAST results are available for this feature:
BLAST of CF832937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 164
Match NameE-valueIdentityDescription
TIP51_MAIZE5.443e-1130.46Aquaporin TIP5-1 OS=Zea mays GN=TIP5-1 PE=2 SV=1[more]
NIP23_MAIZE5.443e-1129.41Aquaporin NIP2-3 OS=Zea mays GN=NIP2-3 PE=2 SV=1[more]
NIP1_NICAL7.109e-1128.24Probable aquaporin NIP-type OS=Nicotiana alata PE=... [more]
NIP11_MAIZE9.285e-1127.98Aquaporin NIP1-1 OS=Zea mays GN=NIP1-1 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02L05_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02L05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832937 ID=CF832937; Name=CF832937; organism=Citrus sinensis; type=EST; length=501bp
TGATCTTTGTCCTCTTTTACTGCACCGCCGGTATCTCAGGTGGTCACATT
AACCCGGCAGTGACGTTCGGACTATTCTTGGCCCGCAAGGTGTCGTTGGT
CCGTGCTGTGATGTACATGGTGGCGCAGTGCCTTGGTGCAATCTCCGGTG
TTGGGTTGGTCAAGGCTTTCCAAAAATCTTACTACACAAGGTACGGAGGT
GGGGCCAACGAGCTGGCCGATGGGTACAGCACAGGCGTTGGATTGGCCGC
CGAGATCATCGGCACCTTTGTGTTGGTTTACACTGTCTTCTCGGCCACTG
ATCCCAAAAGAAGCGCCAGAGACTCCCATGTCCCCGTTTTGGCACCGCTC
CCCATTGGATTTGCTGTGTTCATGGTACACTTGGCCACAATCCCTATCAC
TGGCACTGGCATTAACCCAGCAAGGAGTCTCGTGGCCGCTGTTATTTACA
ACCAGGACAAGGCTTGGGATGATCAATGGCTCTTCTGGGTTGGACCCTTC
A
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