CF832937

Overview
NameCF832937
Unique NameCF832937
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length501
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832937 vs. ExPASy Swiss-Prot
Match: TIP23_MAIZE (Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 4.443e-21
Identity = 65/166 (39.16%), Postives = 88/166 (53.01%), Query Frame = 3
Query:    3 IFVLFYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLVAAVIYNQDKAWDDQWLFWVGP 497
            +FV     A ISGGH+NPAVTFGL +   ++++  ++Y VAQ LGA      V  F   Y T           G S   G+  EI+ TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA  P +G  +NPARS   AV       +   W++WVGP
Sbjct:   67 LFVGVSMAANISGGHLNPAVTFGLAVGGHITILTGILYWVAQLLGA-----SVACFLLQYVTHGQAIPTHGVSGISEIEGVVMEIVITFALVYTVYATAADPKKGS----LGTIAPMAIGFIVGANILAAGPFSGGSMNPARSFGPAVAAGN---FAGNWVYWVGP 220          
BLAST of CF832937 vs. ExPASy Swiss-Prot
Match: AQY1_YEAST (Aquaporin-1 OS=Saccharomyces cerevisiae GN=AQY1 PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 7.578e-21
Identity = 62/160 (38.75%), Postives = 83/160 (51.88%), Query Frame = 3
Query:   18 YCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLVAAVIYNQDKAWDDQWLFWVGP 497
            +C AG+SGG +NPAV+  L LAR VS  R V+  V+Q +  ++  G   A            AN L  G S   GL  E+ GT +L  TV      KR         +A LPIG ++F+ H+A    TGTG+NPARSL AAV       +   W++W+GP
Sbjct:  107 WCFAGVSGGALNPAVSLSLCLARAVSPTRCVVMWVSQIVAGMAAGGAASAMTPGEVLF----ANSLGLGCSRTRGLFLEMFGTAILCLTVLMTAVEKRETN-----FMAALPIGISLFIAHVALTAYTGTGVNPARSLGAAVAARYFPHY--HWIYWIGP 255          
BLAST of CF832937 vs. ExPASy Swiss-Prot
Match: AQP_DROME (Aquaporin OS=Drosophila melanogaster GN=Drip PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 7.578e-21
Identity = 54/157 (34.39%), Postives = 84/157 (53.50%), Query Frame = 3
Query:   33 ISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGG--GANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLVAAVIYNQDKAWDDQWLFWVGP 497
            +SG HINPAVT G  +  ++S+++A  Y++ QC+GAI+G  ++K          GG  G +      +    +  E + TF+LV+ V + +DP R      +   APL +G A+   HL  I ++G  +NPARS   AV+      W   W++WVGP
Sbjct:   70 LSGCHINPAVTLGFLIVGEISILKAAFYIIVQCVGAIAGAAVIKVALDGV---AGGDLGVSSFDPSLNCAQAVLIEALITFILVFVVKAVSDPGR----QDIKGSAPLAVGLAIAAGHLCAIKLSGASMNPARSFGPAVVQG---VWTYHWVYWVGP 216          
BLAST of CF832937 vs. ExPASy Swiss-Prot
Match: AQPZ_BRUAB (Aquaporin Z OS=Brucella abortus GN=aqpZ PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 7.578e-21
Identity = 63/171 (36.84%), Postives = 87/171 (50.88%), Query Frame = 3
Query:    3 IFVLFYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGL--VKAFQKSYYTRYG---GGANELA-DGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLVAAVIYNQDKAWDDQWLFWVGP 497
            +  + Y   GISGGH NPAV+ GL +A ++     + Y VAQ LGAI+   +  V A  K  ++  G    G  EL+  GYS   GL  EII T   +  +  +T     A        AP+ IGF + ++HL +IP+T T +NPARS     ++    A    WLFWV P
Sbjct:   47 VLTMAYAVGGISGGHFNPAVSLGLTVAGRLPAKDLIPYWVAQVLGAIAAAAILYVIASGKDGFSAGGLASNGYGELSPGGYSMMAGLLIEIILTAFFIIIILGSTSSLAPAG------FAPIAIGFGLTLIHLVSIPVTNTSVNPARS-TGVALFADRAALSQLWLFWVAP 210          
BLAST of CF832937 vs. ExPASy Swiss-Prot
Match: AQPZ_BRUA2 (Aquaporin Z OS=Brucella abortus (strain 2308) GN=aqpZ PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 7.578e-21
Identity = 63/171 (36.84%), Postives = 87/171 (50.88%), Query Frame = 3
Query:    3 IFVLFYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGL--VKAFQKSYYTRYG---GGANELA-DGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLVAAVIYNQDKAWDDQWLFWVGP 497
            +  + Y   GISGGH NPAV+ GL +A ++     + Y VAQ LGAI+   +  V A  K  ++  G    G  EL+  GYS   GL  EII T   +  +  +T     A        AP+ IGF + ++HL +IP+T T +NPARS     ++    A    WLFWV P
Sbjct:   47 VLTMAYAVGGISGGHFNPAVSLGLTVAGRLPAKDLIPYWVAQVLGAIAAAAILYVIASGKDGFSAGGLASNGYGELSPGGYSMMAGLLIEIILTAFFIIIILGSTSSLAPAG------FAPIAIGFGLTLIHLVSIPVTNTSVNPARS-TGVALFADRAALSQLWLFWVAP 210          
BLAST of CF832937 vs. ExPASy Swiss-Prot
Match: TIP_ANTMA (Probable aquaporin TIP-type OS=Antirrhinum majus GN=DIP PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 9.897e-21
Identity = 62/166 (37.35%), Postives = 88/166 (53.01%), Query Frame = 3
Query:    3 IFVLFYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLVAAVIYNQDKAWDDQWLFWVGP 497
            +FV     A +SGGH+NPAVT GL +   ++++  + Y +AQCLG+     L+K           G    +A G     G+  EII TF LVYTV+ +A DPK+ +    + V+AP+ IGF V    LA  P +G  +NPARS   AV       +   W++W GP
Sbjct:   67 LFVGVSMAANVSGGHLNPAVTLGLAVGGNITILTGLFYWIAQCLGSTVACLLLKFVTNGLSVPTHG----VAAGMDAIQGVVMEIIITFALVYTVYATAADPKKGS----LGVIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGD---FSQNWIYWAGP 221          
BLAST of CF832937 vs. ExPASy Swiss-Prot
Match: MIP_BOVIN (Lens fiber major intrinsic protein OS=Bos taurus GN=MIP PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 9.897e-21
Identity = 57/155 (36.77%), Postives = 85/155 (54.84%), Query Frame = 3
Query:   33 ISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLVAAVIYNQDKAWDDQWLFWVGP 497
            ISG H+NPAVTF   +  ++SL+RA+ YMVAQ LGA++G  ++ +       R     N L  G S G     EI  T   V  +F+  D +R+ R   V     L +GF++ + HL  +  TG G+NPARS   A++    + + + W++WVGP
Sbjct:   62 ISGAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPP-AVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAIL---TRNFTNHWVYWVGP 208          
BLAST of CF832937 vs. ExPASy Swiss-Prot
Match: AQPZ_BRUME (Aquaporin Z OS=Brucella melitensis GN=aqpZ PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 9.897e-21
Identity = 63/171 (36.84%), Postives = 87/171 (50.88%), Query Frame = 3
Query:    3 IFVLFYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGL--VKAFQKSYYTRYG---GGANELA-DGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLVAAVIYNQDKAWDDQWLFWVGP 497
            +  + Y   GISGGH NPAV+ GL +A ++     + Y VAQ LGAI+   +  V A  K  ++  G    G  EL+  GYS   GL  EII T   +  +  +T     A        AP+ IGF + ++HL +IP+T T +NPARS     ++    A    WLFWV P
Sbjct:   47 VLTMAYAVGGISGGHFNPAVSLGLTVAGRLPAKDLIPYWVAQVLGAIAAAAILYVIASGKDGFSAGGLASNGYGELSPGGYSMMAGLLIEIILTAFFIIIILGSTSSLAPAG------FAPIAIGFGLTLIHLVSIPVTNTWVNPARS-TGVALFADTAALSQLWLFWVAP 210          
BLAST of CF832937 vs. ExPASy Swiss-Prot
Match: TIP23_ARATH (Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.293e-20
Identity = 65/170 (38.24%), Postives = 90/170 (52.94%), Query Frame = 3
Query:    3 IFVLFYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGV----GLAAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLVAAVIYNQDKAWDDQWLFWVGP 497
            +FV     A ISGGH+NPAVT GL +   ++L+    Y +AQCLG+I     V      + T    G +    G S G+    G+  EI+ TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA  P +G  +NPARS   AV+          W++WVGP
Sbjct:   67 LFVGVSIAANISGGHLNPAVTLGLAIGGNITLITGFFYWIAQCLGSI-----VACLLLVFVT---NGKSVPTHGVSAGLGAVEGVVMEIVVTFALVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGD---LSQIWIYWVGP 221          
BLAST of CF832937 vs. ExPASy Swiss-Prot
Match: AQY2_YEAST (Aquaporin-2 OS=Saccharomyces cerevisiae GN=AQY2 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.293e-20
Identity = 63/162 (38.89%), Postives = 83/162 (51.23%), Query Frame = 3
Query:   18 YCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQ--KSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLVAAVIYNQDKAWDDQWLFWVGP 497
            +C AG+SGG +NPAV+  L LAR +S  R V+    Q +  ++  G   A    K  +T      N L  G S   GL  E+ GT VL  TV      KR         +A LPIG ++FM H+A    TGTG+NPARSL AAV       +   W++W+GP
Sbjct:  106 WCFAGVSGGALNPAVSLSLCLARAISPARCVVMWFPQIIAGMAAGGAASAMTPGKVLFT------NALGLGCSRSRGLFLEMFGTAVLCLTVLMTAVEKRETN-----FMAALPIGISLFMAHMALTGYTGTGVNPARSLGAAVAARYFPHY--HWIYWIGP 254          
The following BLAST results are available for this feature:
BLAST of CF832937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 164
Match NameE-valueIdentityDescription
TIP23_MAIZE4.443e-2139.16Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2[more]
AQY1_YEAST7.578e-2138.75Aquaporin-1 OS=Saccharomyces cerevisiae GN=AQY1 PE... [more]
AQP_DROME7.578e-2134.39Aquaporin OS=Drosophila melanogaster GN=Drip PE=1 ... [more]
AQPZ_BRUAB7.578e-2136.84Aquaporin Z OS=Brucella abortus GN=aqpZ PE=3 SV=1[more]
AQPZ_BRUA27.578e-2136.84Aquaporin Z OS=Brucella abortus (strain 2308) GN=a... [more]
TIP_ANTMA9.897e-2137.35Probable aquaporin TIP-type OS=Antirrhinum majus G... [more]
MIP_BOVIN9.897e-2136.77Lens fiber major intrinsic protein OS=Bos taurus G... [more]
AQPZ_BRUME9.897e-2136.84Aquaporin Z OS=Brucella melitensis GN=aqpZ PE=3 SV... [more]
TIP23_ARATH1.293e-2038.24Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3... [more]
AQY2_YEAST1.293e-2038.89Aquaporin-2 OS=Saccharomyces cerevisiae GN=AQY2 PE... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_02L05_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02L05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832937 ID=CF832937; Name=CF832937; organism=Citrus sinensis; type=EST; length=501bp
TGATCTTTGTCCTCTTTTACTGCACCGCCGGTATCTCAGGTGGTCACATT
AACCCGGCAGTGACGTTCGGACTATTCTTGGCCCGCAAGGTGTCGTTGGT
CCGTGCTGTGATGTACATGGTGGCGCAGTGCCTTGGTGCAATCTCCGGTG
TTGGGTTGGTCAAGGCTTTCCAAAAATCTTACTACACAAGGTACGGAGGT
GGGGCCAACGAGCTGGCCGATGGGTACAGCACAGGCGTTGGATTGGCCGC
CGAGATCATCGGCACCTTTGTGTTGGTTTACACTGTCTTCTCGGCCACTG
ATCCCAAAAGAAGCGCCAGAGACTCCCATGTCCCCGTTTTGGCACCGCTC
CCCATTGGATTTGCTGTGTTCATGGTACACTTGGCCACAATCCCTATCAC
TGGCACTGGCATTAACCCAGCAAGGAGTCTCGTGGCCGCTGTTATTTACA
ACCAGGACAAGGCTTGGGATGATCAATGGCTCTTCTGGGTTGGACCCTTC
A
back to top