CF832939

Overview
NameCF832939
Unique NameCF832939
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length486
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832939 vs. ExPASy Swiss-Prot
Match: AQP2_MOUSE (Aquaporin-2 OS=Mus musculus GN=Aqp2 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 2.305e-16
Identity = 54/151 (35.76%), Postives = 77/151 (50.99%), Query Frame = 3
Query:   33 ISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSSRDSHVPVLAPLPIGFAEYMVHLATIPITGTGINPAKSLRAAVIYNKDMAWDDPWLF 485
            +SG HINPAVT    +   VS +RA  Y+ AQ LGA++G  ++         R     N L +  + G  +  E+  T  LV  +F++TD +RS           L IGF+  + HL  I  TG  +NPA+SL  AV+  K   +DD W+F
Sbjct:   62 VSGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAAILHEI-TPVEIRGDLAVNALHNNATAGQAVTVELFLTMQLVLCIFASTDERRSDNLGS----PALSIGFSVTLGHLLGIYFTGCSMNPARSLAPAVVTGK---FDDHWVF 204          
BLAST of CF832939 vs. ExPASy Swiss-Prot
Match: MIP_RABIT (Lens fiber major intrinsic protein OS=Oryctolagus cuniculus GN=MIP PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.011e-16
Identity = 50/138 (36.23%), Postives = 74/138 (53.62%), Query Frame = 3
Query:   33 ISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSSRDSHVPVLAPLPIGFAEYMVHLATIPITGTGINPAKSLRAAVI 446
            ISG H+NPAVTF   +  ++SL+RA+ YM AQ LGA++G  ++ +   +   R     N L  G S G     EI  T   V  +F+  D +R+ R   V     L +GF+  + HL  +  TG G+NPA+S   A++
Sbjct:   62 ISGAHVNPAVTFAFLVGSQMSLLRAICYMAAQLLGAVAGAAVLYSVTPA-AVRGNLALNTLHPGVSLGQATTVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAIL 194          
BLAST of CF832939 vs. ExPASy Swiss-Prot
Match: AQPZ_GLOVI (Aquaporin Z OS=Gloeobacter violaceus GN=aqpZ PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.011e-16
Identity = 54/168 (32.14%), Postives = 91/168 (54.17%), Query Frame = 3
Query:    3 IFVLFYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVK--AFQKSYYTRYGGGAN-----ELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSSRDSHVPVLAPLPIGFAEYMVHLATIPITGTGINPAKSLRAAVIYNKDMAWDDPWLF 485
            +  + +    ISG HINPAV+ GL+ A++      + Y+ AQ LG I+G G++   A  K+ ++  GG A+         GY+    L  E++ TF+ +  +  +TD +R+ +       AP+ IG +  ++HL +IP+T T +NPA+S   A ++  D A  + WLF
Sbjct:   49 LLTMAFAIGHISGCHINPAVSIGLWAAKRFPATELLPYIAAQVLGGIAGAGVLYLIAGGKAGFSLSGGFASNGYGLHSPGGYTLLACLVCEVVMTFMFLMIILGSTD-RRAPKG-----FAPIAIGLSLTLIHLISIPVTNTSVNPARSTGPA-LFVGDWAIAELWLF 209          
BLAST of CF832939 vs. ExPASy Swiss-Prot
Match: AQP2_RAT (Aquaporin-2 OS=Rattus norvegicus GN=Aqp2 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.011e-16
Identity = 55/161 (34.16%), Postives = 79/161 (49.07%), Query Frame = 3
Query:    3 IFVLFYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSSRDSHVPVLAPLPIGFAEYMVHLATIPITGTGINPAKSLRAAVIYNKDMAWDDPWLF 485
            I +L      +SG HINPAVT    +   VS +RA  Y+ AQ LGA++G  ++         R     N L +  + G  +  E+  T  LV  +F++TD +R            L IGF+  + HL  I  TG  +NPA+SL  AV+  K   +DD W+F
Sbjct:   52 IGILVQALGHVSGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAAILHEI-TPVEIRGDLAVNALHNNATAGQAVTVELFLTMQLVLCIFASTDERRGDNLGS----PALSIGFSVTLGHLLGIYFTGCSMNPARSLAPAVVTGK---FDDHWVF 204          
BLAST of CF832939 vs. ExPASy Swiss-Prot
Match: TIP2_TOBAC (Probable aquaporin TIP-type RB7-18C OS=Nicotiana tabacum PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 5.136e-16
Identity = 56/149 (37.58%), Postives = 79/149 (53.02%), Query Frame = 3
Query:    3 IFVLFYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVF-SATDPKRSSRDSHVPVLAPLPIGFAEYMVHLATIPITGTGINPAKSLRAAVI 446
            +FV     A ISGGH+NPAVT GL +   ++++    Y +AQ LG+     L+K           G    +A G +   G+  EII TF LVYTV+ +A DPK+ S    +  +AP+ IGF      LA  P +G  +NPA+S   AV+
Sbjct:   67 LFVGVSIAANISGGHLNPAVTLGLAVGGNITILTGFFYWIAQLLGSTVACLLLKYVTNGLAVPTHG----VAAGLNGFQGVVMEIIITFALVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVV 207          
BLAST of CF832939 vs. ExPASy Swiss-Prot
Match: MIP_SHEEP (Lens fiber major intrinsic protein OS=Ovis aries GN=MIP PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.136e-16
Identity = 50/138 (36.23%), Postives = 74/138 (53.62%), Query Frame = 3
Query:   33 ISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSSRDSHVPVLAPLPIGFAEYMVHLATIPITGTGINPAKSLRAAVI 446
            ISG H+NPAVTF   +  ++SL+RA+ Y+VAQ LGA++G  ++ +       R     N L  G S G     EI  T   V  +F+  D +R+ R   V     L +GF+  + HL  +  TG G+NPA+S   A++
Sbjct:   62 ISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPP-AVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAIL 194          
BLAST of CF832939 vs. ExPASy Swiss-Prot
Match: TIP1_TOBAC (Probable aquaporin TIP-type RB7-5A OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 6.707e-16
Identity = 56/149 (37.58%), Postives = 79/149 (53.02%), Query Frame = 3
Query:    3 IFVLFYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVF-SATDPKRSSRDSHVPVLAPLPIGFAEYMVHLATIPITGTGINPAKSLRAAVI 446
            +FV     A ISGGH+NPAVT GL +   ++++    Y +AQ LG+     L+K           G    +A G +   G+  EII TF LVYTV+ +A DPK+ S    +  +AP+ IGF      LA  P +G  +NPA+S   AV+
Sbjct:   67 LFVGVSIAANISGGHLNPAVTLGLAVGGNITILTGFFYWIAQLLGSTVACLLLKYVTNGLAVPTHG----VAAGLNGLQGVVMEIIITFALVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVV 207          
BLAST of CF832939 vs. ExPASy Swiss-Prot
Match: TIP11_MAIZE (Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 6.707e-16
Identity = 58/162 (35.80%), Postives = 80/162 (49.38%), Query Frame = 3
Query:    3 IFVLFYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVF-SATDPKRSSRDSHVPVLAPLPIGFAEYMVHLATIPITGTGINPAKSLRAAVIYNKDMAWDDPWLF 485
            +FV     A ISGGH+NPAVTFG F+   ++L R ++Y VAQ LG+     L++       T   G       G S    L  EI+ TF LVYTV+ +A DPK+ S    +  +AP+ IGF      L      G  +NPA S   A++      W   W++
Sbjct:   69 LFVAVSVGANISGGHVNPAVTFGAFVGGNITLFRGLLYWVAQLLGSTVACFLLRFSTGGQATGTFG-----LTGVSVWEALVLEIVMTFGLVYTVYATAVDPKKGS----LGTIAPIAIGFIVGANILVGGAFDGASMNPAVSFGPALV---SWEWGYQWVY 218          
BLAST of CF832939 vs. ExPASy Swiss-Prot
Match: TIP31_ORYSJ (Probable aquaporin TIP3-1 OS=Oryza sativa subsp. japonica GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.144e-15
Identity = 55/156 (35.26%), Postives = 79/156 (50.64%), Query Frame = 3
Query:   33 ISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVG----LAAEIIGTFVLVYTVFSAT-DPKRSSRDSHVPVLAPLPIGFAEYMVHLATIPITGTGINPAKSLRAAVIYNKDMAWDDPWLF 485
            ISGGH+NPA+TFG  L  ++SL+RA+ Y +AQ LGA+    L++           GG        ++GVG    +  E   TF L+Y  ++   DPKR     HV  +APL +GF      LA  P  G G+NPA+    A++      W   W++
Sbjct:   84 ISGGHVNPAITFGALLGGRLSLIRALFYWLAQLLGAVVATLLLRLTT--------GGMRPPGFALASGVGDWHAVLLEATMTFGLMYAYYATVIDPKR----GHVGTIAPLAVGFLLGANMLAGGPFDGAGMNPARVFGPALV---GWRWRHHWVY 224          
BLAST of CF832939 vs. ExPASy Swiss-Prot
Match: MIP_CANFA (Lens fiber major intrinsic protein OS=Canis familiaris GN=MIP PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.144e-15
Identity = 50/138 (36.23%), Postives = 72/138 (52.17%), Query Frame = 3
Query:   33 ISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSSRDSHVPVLAPLPIGFAEYMVHLATIPITGTGINPAKSLRAAVI 446
            ISG H+NPAVTF   +  ++SL+RA  YM AQ LGA++G  ++ +       R     N L  G S G     EI  T   V  +F+  D +R+ R   V     L +GF+  + HL  +  TG G+NPA+S   A++
Sbjct:   62 ISGAHVNPAVTFAFLVGSQMSLLRAFCYMAAQLLGAVAGAAVLYSVTPP-AVRGNLALNTLHPGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAIL 194          
The following BLAST results are available for this feature:
BLAST of CF832939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 150
Match NameE-valueIdentityDescription
AQP2_MOUSE2.305e-1635.76Aquaporin-2 OS=Mus musculus GN=Aqp2 PE=2 SV=2[more]
MIP_RABIT3.011e-1636.23Lens fiber major intrinsic protein OS=Oryctolagus ... [more]
AQPZ_GLOVI3.011e-1632.14Aquaporin Z OS=Gloeobacter violaceus GN=aqpZ PE=3 ... [more]
AQP2_RAT3.011e-1634.16Aquaporin-2 OS=Rattus norvegicus GN=Aqp2 PE=1 SV=1[more]
TIP2_TOBAC5.136e-1637.58Probable aquaporin TIP-type RB7-18C OS=Nicotiana t... [more]
MIP_SHEEP5.136e-1636.23Lens fiber major intrinsic protein OS=Ovis aries G... [more]
TIP1_TOBAC6.707e-1637.58Probable aquaporin TIP-type RB7-5A OS=Nicotiana ta... [more]
TIP11_MAIZE6.707e-1635.80Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1[more]
TIP31_ORYSJ1.144e-1535.26Probable aquaporin TIP3-1 OS=Oryza sativa subsp. j... [more]
MIP_CANFA1.144e-1536.23Lens fiber major intrinsic protein OS=Canis famili... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02L06_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02L06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832939 ID=CF832939; Name=CF832939; organism=Citrus sinensis; type=EST; length=486bp
TGATCTTTGTCCTCTTTTACTGCACCGCCGGTATCTCAGGTGGTCACATT
AACCCGGCAGTGACGTTCGGACTATTCTTGGCCCGCAAGGTGTCGTTGGT
CCGTGCTGTGATGTACATGGTGGCGCAGTGCCTTGGTGCAATCTCCGGCG
TTGGGTTGGTCAAGGCTTTCCAAAAATCTTACTACACAAGGTACGGAGGA
GGGGCCAACGAGCTGGCCGATGGGTACAGCACAGGCGTTGGATTGGCCGC
CGAGATCATCGGCACCTTTGTGTTGGTTTACACTGTCTTCTCGGCCACTG
ATCCCAAAAGAAGCTCCAGAGACTCCCATGTCCCCGTTTTGGCACCGCTC
CCCATTGGATTTGCTGAGTACATGGTACACTTGGCCACAATCCCAATCAC
TGGCACTGGCATTAACCCAGCAAAGAGTCTCCGGGCCGCTGTTATTTACA
ATAAGGACATGGCTTGGGATGATCCATGGCTCTTCT
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