CF832939

Overview
NameCF832939
Unique NameCF832939
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length486
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832939 vs. ExPASy Swiss-Prot
Match: TIP22_MAIZE (Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.494e-15
Identity = 59/151 (39.07%), Postives = 81/151 (53.64%), Query Frame = 3
Query:    3 IFVLFYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVK--AFQKSYYTR-YGGGANELADGYSTGVGLAAEIIGTFVLVYTVF-SATDPKRSSRDSHVPVLAPLPIGFAEYMVHLATIPITGTGINPAKSLRAAV 443
            +FV     A  SGGH+NPAVTFGL +   ++++  + Y VAQ LGA     L++     K+  T    GG  EL        G+  EI+ TF LVYTV+ +A DPK+ S    +  +AP+ IGF      LA  P +G  +NPA+S   AV
Sbjct:   67 LFVGVSVAANTSGGHLNPAVTFGLAVGGHITVLTGLFYWVAQLLGASVACLLLRFVTHGKAIPTHGVSGGTTELE-------GVVFEIVITFALVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAV 206          
BLAST of CF832939 vs. ExPASy Swiss-Prot
Match: TIP41_ARATH (Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.951e-15
Identity = 57/153 (37.25%), Postives = 79/153 (51.63%), Query Frame = 3
Query:   33 ISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYT-RYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSA-TDPKRSSRDSHVPVLAPLPIGFAEYMVHLATIPITGTGINPAKSLRAAVIYNKDMAWDDPWLF 485
            ISGGH+NPAVT GL L   +S+ RA +Y + Q L + +       F  SY T   G   + LA G S   G+  EII TF L++TV++   DPK+ S D   P+L     GF      LA    +G  +NPA+S   A++      W D W++
Sbjct:   73 ISGGHLNPAVTLGLLLGGHISVFRAFLYWIDQLLASSAA-----CFLLSYLTGGMGTPVHTLASGVSYTQGIIWEIILTFSLLFTVYATIVDPKKGSLDGFGPLLT----GFVVGANILAGGAFSGASMNPARSFGPALVSGN---WTDHWVY 213          
BLAST of CF832939 vs. ExPASy Swiss-Prot
Match: AQPZ_PSEAE (Aquaporin Z OS=Pseudomonas aeruginosa GN=aqpZ PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.549e-15
Identity = 52/168 (30.95%), Postives = 86/168 (51.19%), Query Frame = 3
Query:    3 IFVLFYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVG---LVKAFQKSYYTRYGGGANELAD----GYSTGVGLAAEIIGTFVLVYTVFSATDPKRSSRDSHVPVLAPLPIGFAEYMVHLATIPITGTGINPAKSLRAAVIYNKDMAWDDPWLF 485
            +  + Y    ISG H+NPAV+ GL++  +    + + Y+VAQ LG ++  G   L+ + +  +    G  +N   +    GYS    L +E++ T + +  +  AT  KR+ +       AP+ IG    ++HL +IP+T T +NPA+S  A  +Y  D A    WLF
Sbjct:   46 VLTMAYAIGPISGAHLNPAVSVGLWVGGRFPASQLLPYVVAQVLGGLAAGGVLYLIASGKAGFDLAAGFASNGYGEHSPGGYSLQAALVSEVVLTGMFLLIILGATS-KRAPQG-----FAPIAIGLTLTLIHLISIPVTNTSVNPARS-TAVALYVGDWAVSQLWLF 206          
BLAST of CF832939 vs. ExPASy Swiss-Prot
Match: AQPZ1_AGRT5 (Aquaporin Z 1 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=aqpZ1 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.549e-15
Identity = 60/168 (35.71%), Postives = 80/168 (47.62%), Query Frame = 3
Query:    3 IFVLFYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGA-ISGVGLVKAFQKSYYTRYGG-GANELAD----GYSTGVGLAAEIIGTFVLVYTVFSATDPKRSSRDSHVPV-LAPLPIGFAEYMVHLATIPITGTGINPAKSLRAAVIYNKDMAWDDPWLF 485
            +  + Y   GISGGH NPAV+ GL +A K      V Y+VAQ LGA ++   L            GG  AN   +    GYS    L  EII T   +  +  +T          VPV  AP+ IG A  ++HL +IP+T T +NPA+S   A ++    A    WLF
Sbjct:   47 VLTMAYAVGGISGGHFNPAVSVGLTVAGKFPAANLVPYIVAQVLGAVVAAAALYVILTGKAGAEIGGFAANGYGEHSPGGYSLLSALLIEIILTAFFLVVILGST-------HGRVPVGFAPVAIGLALTLIHLISIPVTNTSVNPARSTGQA-LFVGGWALQQLWLF 206          
BLAST of CF832939 vs. ExPASy Swiss-Prot
Match: MIP_RAT (Lens fiber major intrinsic protein (Fragment) OS=Rattus norvegicus GN=Mip PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 3.329e-15
Identity = 49/138 (35.51%), Postives = 72/138 (52.17%), Query Frame = 3
Query:   33 ISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSSRDSHVPVLAPLPIGFAEYMVHLATIPITGTGINPAKSLRAAVI 446
            ISG H+NPAVTF   +  ++SL+RA  Y+ AQ LGA++G  ++ +       R     N L  G S G     EI  T   V  +F+  D +R+ R   V     L +GF+  + HL  +  TG G+NPA+S   A++
Sbjct:   60 ISGAHVNPAVTFAFLVGSQMSLLRAFCYIAAQLLGAVAGAAVLYSVTPP-AVRGNLALNTLHAGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRMGSV----ALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAIL 192          
BLAST of CF832939 vs. ExPASy Swiss-Prot
Match: MIP_RANPI (Lens fiber major intrinsic protein OS=Rana pipiens PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.329e-15
Identity = 50/138 (36.23%), Postives = 71/138 (51.45%), Query Frame = 3
Query:   33 ISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSSRDSHVPVLAPLPIGFAEYMVHLATIPITGTGINPAKSLRAAVI 446
            +SG HINPAVTF   +  ++SL RA+ Y+ AQ LGA++G  ++     +   R     N L  G S G     EI  T   V  +F+  D +R+ R   V     L IGF+  + HL  +  TG  +NPA+S   AV+
Sbjct:   62 VSGAHINPAVTFAFLIGSQMSLFRAIFYIAAQLLGAVAGAAVLYGVTPA-AIRGNLALNTLHPGVSLGQATTVEIFLTLQFVLCIFATYDERRNGRLGSV----SLAIGFSLTLGHLFGLYYTGASMNPARSFAPAVL 194          
BLAST of CF832939 vs. ExPASy Swiss-Prot
Match: MIP_MOUSE (Lens fiber major intrinsic protein OS=Mus musculus GN=Mip PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 3.329e-15
Identity = 49/138 (35.51%), Postives = 72/138 (52.17%), Query Frame = 3
Query:   33 ISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSSRDSHVPVLAPLPIGFAEYMVHLATIPITGTGINPAKSLRAAVI 446
            ISG H+NPAVTF   +  ++SL+RA  Y+ AQ LGA++G  ++ +       R     N L  G S G     EI  T   V  +F+  D +R+ R   V     L +GF+  + HL  +  TG G+NPA+S   A++
Sbjct:   62 ISGAHVNPAVTFAFLVGSQMSLLRAFCYIAAQLLGAVAGAAVLYSVTPP-AVRGNLALNTLHAGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRMGSV----ALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAIL 194          
BLAST of CF832939 vs. ExPASy Swiss-Prot
Match: AQPZ_CHRVO (Aquaporin Z OS=Chromobacterium violaceum GN=aqpZ PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.329e-15
Identity = 54/174 (31.03%), Postives = 80/174 (45.98%), Query Frame = 3
Query:    3 IFVLFYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAIS-------------GVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSSRDSHVPVLAPLPIGFAEYMVHLATIPITGTGINPAKSLRAAVIYNKDMAWDDPWLF 485
            +  + Y    ISG H+NPAV+ GL+   +    +   Y+VAQ LGAI+             G  + K F  + Y  +  G      GYS    L  E++ T   +  +  ATD +  +        APL IG A  ++HL +IP+T T +NPA+S   A ++    A    WLF
Sbjct:   46 VVTMAYAIGHISGCHLNPAVSIGLWAGGRFPAGQLAPYIVAQVLGAIAAGAVLYVIASGGAGFDVAKGFASNGYAEHSPG------GYSLLAALVCEVVMTMFFLLVIMGATDKRAPAG------FAPLAIGLALTLIHLISIPVTNTSVNPARSTGVA-LFVGGWAVQQLWLF 206          
BLAST of CF832939 vs. ExPASy Swiss-Prot
Match: TIP32_ORYSJ (Probable aquaporin TIP3-2 OS=Oryza sativa subsp. japonica GN=TIP3-2 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.265e-14
Identity = 53/156 (33.97%), Postives = 78/156 (50.00%), Query Frame = 3
Query:   36 SGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTG------VGLAAEIIGTFVLVYTVFSATDPKRSSRDSHVPVLAPLPIGFAEYMVHLATIPITGTGINPAKSLRAAVIYNKDMAWDDPWLF 485
            SGGH+NPAVTFG+ + R++S  RA +Y  AQ LGA+  V L++           GG   +  G++ G        L  E++ TF LVYTV++    +RS        +APL IG       LA  P  G  +NPA++   A++      W   W++
Sbjct:   87 SGGHVNPAVTFGVLVGRRISFARAALYWAAQLLGAVLAVLLLRL--------ASGGMRPM--GFTLGHRIHERHALLLEVVMTFGLVYTVYATAVDRRSGGGD----IAPLAIGLVAGANILAGGPFDGAAMNPARAFGPALV---GWNWRHHWVY 225          
BLAST of CF832939 vs. ExPASy Swiss-Prot
Match: MIP_CAVPO (Lens fiber major intrinsic protein OS=Cavia porcellus GN=MIP PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.265e-14
Identity = 49/138 (35.51%), Postives = 71/138 (51.45%), Query Frame = 3
Query:   33 ISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSSRDSHVPVLAPLPIGFAEYMVHLATIPITGTGINPAKSLRAAVI 446
            ISG H+NPAVTF   +  ++SL+RA  YM AQ LGA++G  ++ +       R     N L  G S       EI  T   V  +F+  D +R+ R   V     L +GF+  + HL  +  TG G+NPA+S   A++
Sbjct:   62 ISGAHVNPAVTFXFLVGSQMSLLRAFCYMAAQLLGAVAGAAVLYSVTPP-AVRGNLALNTLHAGVSVXQATTVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAIL 194          
The following BLAST results are available for this feature:
BLAST of CF832939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 150
Match NameE-valueIdentityDescription
TIP22_MAIZE1.494e-1539.07Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1[more]
TIP41_ARATH1.951e-1537.25Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1... [more]
AQPZ_PSEAE2.549e-1530.95Aquaporin Z OS=Pseudomonas aeruginosa GN=aqpZ PE=3... [more]
AQPZ1_AGRT52.549e-1535.71Aquaporin Z 1 OS=Agrobacterium tumefaciens (strain... [more]
MIP_RAT3.329e-1535.51Lens fiber major intrinsic protein (Fragment) OS=R... [more]
MIP_RANPI3.329e-1536.23Lens fiber major intrinsic protein OS=Rana pipiens... [more]
MIP_MOUSE3.329e-1535.51Lens fiber major intrinsic protein OS=Mus musculus... [more]
AQPZ_CHRVO3.329e-1531.03Aquaporin Z OS=Chromobacterium violaceum GN=aqpZ P... [more]
TIP32_ORYSJ1.265e-1433.97Probable aquaporin TIP3-2 OS=Oryza sativa subsp. j... [more]
MIP_CAVPO1.265e-1435.51Lens fiber major intrinsic protein OS=Cavia porcel... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02L06_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02L06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832939 ID=CF832939; Name=CF832939; organism=Citrus sinensis; type=EST; length=486bp
TGATCTTTGTCCTCTTTTACTGCACCGCCGGTATCTCAGGTGGTCACATT
AACCCGGCAGTGACGTTCGGACTATTCTTGGCCCGCAAGGTGTCGTTGGT
CCGTGCTGTGATGTACATGGTGGCGCAGTGCCTTGGTGCAATCTCCGGCG
TTGGGTTGGTCAAGGCTTTCCAAAAATCTTACTACACAAGGTACGGAGGA
GGGGCCAACGAGCTGGCCGATGGGTACAGCACAGGCGTTGGATTGGCCGC
CGAGATCATCGGCACCTTTGTGTTGGTTTACACTGTCTTCTCGGCCACTG
ATCCCAAAAGAAGCTCCAGAGACTCCCATGTCCCCGTTTTGGCACCGCTC
CCCATTGGATTTGCTGAGTACATGGTACACTTGGCCACAATCCCAATCAC
TGGCACTGGCATTAACCCAGCAAAGAGTCTCCGGGCCGCTGTTATTTACA
ATAAGGACATGGCTTGGGATGATCCATGGCTCTTCT
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