CF832939

Overview
NameCF832939
Unique NameCF832939
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length486
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7528 contig Csv1_Contig7528:422..907. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832939 vs. ExPASy Swiss-Prot
Match: AQP6_RAT (Aquaporin-6 OS=Rattus norvegicus GN=Aqp6 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.445e-12
Identity = 50/145 (34.48%), Postives = 69/145 (47.59%), Query Frame = 3
Query:   36 SGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGG-----GANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSSRDSHVPVLAPLPIGFAEYMVHLATIPITGTGINPAKSLRAAVIYNK 455
            SG H NPAVT    +   +SL RAV Y+ AQ  GA  G  L+      Y    GG     G N + +  STG  +A E++ T  LV  VF++ D +++       +   + +G      HL  I  TG  +NPA+S   AVI  K
Sbjct:   74 SGAHANPAVTLAYLVGSHISLPRAVAYIAAQLAGATVGAALL------YGVTPGGVRETLGVNVVHNSTSTGQAVAVELVLTLQLVLCVFASMDSRQTLGSPAAMIGTSVALG------HLIGIYFTGCSMNPARSFGPAVIVGK 206          
BLAST of CF832939 vs. ExPASy Swiss-Prot
Match: AQP6_MOUSE (Aquaporin-6 OS=Mus musculus GN=Aqp6 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.445e-12
Identity = 49/145 (33.79%), Postives = 70/145 (48.28%), Query Frame = 3
Query:   36 SGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGG-----GANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSSRDSHVPVLAPLPIGFAEYMVHLATIPITGTGINPAKSLRAAVIYNK 455
            SG H NPAVT    +   +SL RA+ Y+ AQ  GA +G  L+      Y    GG     G N + +  STG  +A E++ T  LV  VF++ D +++       +   + +G      HL  I  TG  +NPA+S   AVI  K
Sbjct:   74 SGAHANPAVTLAYLVGSHISLPRAMAYIAAQLAGATAGAALL------YGVTPGGIRETLGVNVVHNSTSTGQAVAVELVLTLQLVLCVFASMDGRQTLASPAAMIGTSVALG------HLIGIYFTGCSMNPARSFGPAVIVGK 206          
BLAST of CF832939 vs. ExPASy Swiss-Prot
Match: AQPB_DICDI (Aquaporin B OS=Dictyostelium discoideum GN=wacA PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.499e-12
Identity = 48/149 (32.21%), Postives = 75/149 (50.34%), Query Frame = 3
Query:   12 LFYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVY-----TVFSATDPKRSSRDSHVPVLAPLPIGFAEYMVHLATIPITGTGINPAKSLRAAV 443
            + +  +GISG  +NPAVT G     ++ ++  + +++ QC+GA+ G G++KA   ++Y R    A  LA G +   G   E++ T  LV+      V++  DPK S        +APL IG A           TG  +NPA+S   AV
Sbjct:   80 IIWSISGISGCQLNPAVTVGCVTTGRMGILNGIAFIIFQCVGALVGAGMMKASLPTFYER-DLSATTLATGVNVARGFFLEMVTTSFLVFVVLGVAVYNEWDPKISR-------VAPLAIGCAVIAGVGFLNLFTGGSLNPARSFGPAV 220          
BLAST of CF832939 vs. ExPASy Swiss-Prot
Match: TIP42_ORYSJ (Probable aquaporin TIP4-2 OS=Oryza sativa subsp. japonica GN=TIP4-2 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 7.674e-12
Identity = 52/167 (31.14%), Postives = 83/167 (49.70%), Query Frame = 3
Query:    3 IFVLFYCTAG--ISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGA---NELADGYSTGVGLAAEIIGTFVLVYTVFSA-TDPKRSSRDSHVPVLAPLPIGFAEYMVHLATIPITGTGINPAKSLRAAVIYNKDMAWDDPWLF 485
            + V    TAG  +SGGH+NPAVT  L +   ++L R+ +Y+ AQ  G+     L++          GG A   + LADG     G+AAE + TF L+  + +   DP+R++     P+L  L +G       +A   +TG  +NPA+S   A+   +   W   W++
Sbjct:   69 LVVAVLATAGFHVSGGHLNPAVTLSLAVGGHITLFRSALYVAAQLAGSSLACLLLRCLT-------GGAATPVHALADGVGPVQGVAAEAVFTFTLLLVICATILDPRRAAPPGTGPLLTGLLVGANT----VAGGALTGASMNPARSFGPALATGE---WAHHWVY 221          
BLAST of CF832939 vs. ExPASy Swiss-Prot
Match: TIP41_MAIZE (Aquaporin TIP4-1 OS=Zea mays GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.309e-11
Identity = 51/157 (32.48%), Postives = 77/157 (49.04%), Query Frame = 3
Query:   24 TAG--ISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFS-ATDPKRSSRDSHVPVLAPLPIGFAEYMVHLATIPITGTGINPAKSLRAAVIYNKDMAWDDPWLF 485
            TAG  +SGGH+NPAVT GL +   ++ +RAV+Y+ AQ L + +   L++       T      + L  G S   GL  E+I TF L++  ++   DP+     S V  + PL  G       LA    TG  +NPA+S   A+       W + W++
Sbjct:   78 TAGFHVSGGHLNPAVTVGLMVRGHITKLRAVLYVAAQLLASSAACVLLRFLSGGMVT----PVHALGRGISPMQGLVMEVILTFSLLFVTYAMILDPR-----SQVRAIGPLLTGLIVGANSLAGGNFTGASMNPARSFGPALATGD---WTNHWVY 222          
BLAST of CF832939 vs. ExPASy Swiss-Prot
Match: AQP8_HUMAN (Aquaporin-8 OS=Homo sapiens GN=AQP8 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.309e-11
Identity = 49/153 (32.03%), Postives = 75/153 (49.02%), Query Frame = 3
Query:   33 ISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAF--QKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSSRDSHVPVLAPLPIGFAEYMVHLATIPITGTGINPAKSLRAAVIYNKDMAWDDPWLF 485
            ISGGH NPAV+    L   ++LV  + Y V+Q LG + G  L KA   ++ ++   G     + +       L AEII T +L   V      +++        LAP  IGFA  +  LA  P++G  +NPA++   AV+ N    W+  W++
Sbjct:   86 ISGGHFNPAVSLAAMLIGGLNLVMLLPYWVSQLLGGMLGAALAKAVSPEERFWNASGAAFVTVQEQGQVAGALVAEIILTTLLALAVCMGAINEKTKGP-----LAPFSIGFAVTVDILAGGPVSGGCMNPARAFGPAVVANH---WNFHWIY 230          
BLAST of CF832939 vs. ExPASy Swiss-Prot
Match: AQPA_DICDI (Aquaporin A OS=Dictyostelium discoideum GN=aqpA PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.710e-11
Identity = 45/158 (28.48%), Postives = 77/158 (48.73%), Query Frame = 3
Query:   12 LFYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSSRDSHVPVLAPLPIGFAEYMVHLATIPITGTGINPAKSLRAAVIYNKDMAWDDPWLF 485
            L +  +G+SG ++NPAVT    L+ +V L+ ++ Y+ AQ LG I+G G++     + Y R   G   LA G +TG     E++ T +L   V   +    +  D  +  +AP  IG A ++        +G  +NP + L  ++I      W   W++
Sbjct:   83 LIWAVSGVSGCNLNPAVTLANLLSGRVGLIDSLYYVAAQILGCIAGAGILYGCLPNMY-RIDLGVPHLAPGMNTGQAFLMEMMLTSILCLCVLGTS--VFNVWDRRLNRIAPFAIGLALFIGVAIGFNFSGGALNPVRVLGPSIISG---VWSHHWVY 234          
BLAST of CF832939 vs. ExPASy Swiss-Prot
Match: TIP43_ORYSJ (Probable aquaporin TIP4-3 OS=Oryza sativa subsp. japonica GN=TIP4-3 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.233e-11
Identity = 49/156 (31.41%), Postives = 73/156 (46.79%), Query Frame = 3
Query:   33 ISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANEL-----ADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSSRDSHVPVLAPLPIGFAEYMVHLATIPITGTGINPAKSLRAAVIYNKDMAWDDPWLF 485
            +SGGHINPAVT GL     ++L R+ +Y  AQ LG+     L+ A          GG   +     A G      +A E + TF L++ V++    +R +    V  L PL +G       LA  P +G  +NPA+S   A+   +   W D W++
Sbjct:   76 VSGGHINPAVTLGLAAGGHITLFRSALYAAAQLLGSSLACLLLAALT--------GGEEAVPVHAPAPGVGAARAVAMEAVLTFSLLFAVYATVVDRRRA----VGALGPLLVGLVVGANILAGGPYSGASMNPARSFGPALAAGE---WADHWIY 216          
BLAST of CF832939 vs. ExPASy Swiss-Prot
Match: NO26_SOYBN (Nodulin-26 OS=Glycine max PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 6.496e-11
Identity = 47/162 (29.01%), Postives = 75/162 (46.30%), Query Frame = 3
Query:    9 VLFYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAA---EIIGTFVLVYTVFSATDPKRSSRDSHVPVLAPLPIGFAEYMVHLATIPITGTGINPAKSLRAAVIYNKDMAWDDPWLF 485
            VL Y    ISGGH NPAVT      R+  L++   Y+VAQ LG+I   G ++         + G  ++ +     G  L A   E I TF L++ +       R+     V   A + IG    +  +   P+TG  +NPA+SL  A ++ +   ++  W++
Sbjct:   83 VLVYTVGHISGGHFNPAVTIAFASTRRFPLIQVPAYVVAQLLGSILASGTLRLL-------FMGNHDQFSGTVPNGTNLQAFVFEFIMTFFLMFVICGVATDNRA-----VGEFAGIAIGSTLLLNVIIGGPVTGASMNPARSLGPAFVHGE---YEGIWIY 229          
BLAST of CF832939 vs. ExPASy Swiss-Prot
Match: TIP43_MAIZE (Aquaporin TIP4-3 OS=Zea mays GN=TIP4-3 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.485e-11
Identity = 49/164 (29.88%), Postives = 79/164 (48.17%), Query Frame = 3
Query:    3 IFVLFYCTAG--ISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSA-TDPKRSSRDSHVPVLAPLPIGFAEYMVHLATIPITGTGINPAKSLRAAVIYNKDMAWDDPWLF 485
            + V    TAG  ISGGH+NPAVT  L +   V+L R+ +Y+ AQ L + +   L++       T      + LA+G     G+ AE + TF L++ +++   DP++      +P   PL  G       +A   ++G  +NPA+S   AV       W   W++
Sbjct:   64 LVVAVIATAGFHISGGHVNPAVTLSLAVGGHVTLFRSSLYIAAQMLASSAACFLLRWLTGGLAT----PVHALAEGVGPLQGVVAEAVFTFSLLFVIYATILDPRKL-----LPGAGPLLTGLLVGANSVAGAALSGASMNPARSFGPAVASG---VWTHHWVY 215          
The following BLAST results are available for this feature:
BLAST of CF832939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 150
Match NameE-valueIdentityDescription
AQP6_RAT3.445e-1234.48Aquaporin-6 OS=Rattus norvegicus GN=Aqp6 PE=1 SV=1[more]
AQP6_MOUSE3.445e-1233.79Aquaporin-6 OS=Mus musculus GN=Aqp6 PE=2 SV=1[more]
AQPB_DICDI4.499e-1232.21Aquaporin B OS=Dictyostelium discoideum GN=wacA PE... [more]
TIP42_ORYSJ7.674e-1231.14Probable aquaporin TIP4-2 OS=Oryza sativa subsp. j... [more]
TIP41_MAIZE1.309e-1132.48Aquaporin TIP4-1 OS=Zea mays GN=TIP4-1 PE=2 SV=1[more]
AQP8_HUMAN1.309e-1132.03Aquaporin-8 OS=Homo sapiens GN=AQP8 PE=2 SV=2[more]
AQPA_DICDI1.710e-1128.48Aquaporin A OS=Dictyostelium discoideum GN=aqpA PE... [more]
TIP43_ORYSJ2.233e-1131.41Probable aquaporin TIP4-3 OS=Oryza sativa subsp. j... [more]
NO26_SOYBN6.496e-1129.01Nodulin-26 OS=Glycine max PE=1 SV=2[more]
TIP43_MAIZE8.485e-1129.88Aquaporin TIP4-3 OS=Zea mays GN=TIP4-3 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02L06_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02L06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832939 ID=CF832939; Name=CF832939; organism=Citrus sinensis; type=EST; length=486bp
TGATCTTTGTCCTCTTTTACTGCACCGCCGGTATCTCAGGTGGTCACATT
AACCCGGCAGTGACGTTCGGACTATTCTTGGCCCGCAAGGTGTCGTTGGT
CCGTGCTGTGATGTACATGGTGGCGCAGTGCCTTGGTGCAATCTCCGGCG
TTGGGTTGGTCAAGGCTTTCCAAAAATCTTACTACACAAGGTACGGAGGA
GGGGCCAACGAGCTGGCCGATGGGTACAGCACAGGCGTTGGATTGGCCGC
CGAGATCATCGGCACCTTTGTGTTGGTTTACACTGTCTTCTCGGCCACTG
ATCCCAAAAGAAGCTCCAGAGACTCCCATGTCCCCGTTTTGGCACCGCTC
CCCATTGGATTTGCTGAGTACATGGTACACTTGGCCACAATCCCAATCAC
TGGCACTGGCATTAACCCAGCAAAGAGTCTCCGGGCCGCTGTTATTTACA
ATAAGGACATGGCTTGGGATGATCCATGGCTCTTCT
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