CF832939

Overview
NameCF832939
Unique NameCF832939
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length486
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7528 contig Csv1_Contig7528:422..907. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832939 vs. ExPASy Swiss-Prot
Match: TIP11_ARATH (Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.463e-18
Identity = 61/166 (36.75%), Postives = 88/166 (53.01%), Query Frame = 3
Query:    3 IFVLFYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGL----AAEIIGTFVLVYTVF-SATDPKRSSRDSHVPVLAPLPIGFAEYMVHLATIPITGTGINPAKSLRAAVIYNKDMAWDDPWLF 485
            +FV     A ISGGH+NPAVTFG F+   ++L+R ++Y +AQ LG++    ++K           GG    A G S GVG+      EI+ TF LVYTV+ +A DPK  S    +  +AP+ IGF      LA    +G  +NPA +   AV+      W + W++
Sbjct:   69 LFVAVSVGANISGGHVNPAVTFGAFIGGNITLLRGILYWIAQLLGSVVACLILKFAT--------GGLAVPAFGLSAGVGVLNAFVFEIVMTFGLVYTVYATAIDPKNGS----LGTIAPIAIGFIVGANILAGGAFSGASMNPAVAFGPAVV---SWTWTNHWVY 219          
BLAST of CF832939 vs. ExPASy Swiss-Prot
Match: TIP22_ORYSJ (Probable aquaporin TIP2-2 OS=Oryza sativa subsp. japonica GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.201e-18
Identity = 60/148 (40.54%), Postives = 80/148 (54.05%), Query Frame = 3
Query:    3 IFVLFYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVF-SATDPKRSSRDSHVPVLAPLPIGFAEYMVHLATIPITGTGINPAKSLRAAV 443
            +FV     A ISGGH+NPAVTFGL L  +++++  V Y +AQ LGAI G  LV+         +G        G     G+  EII TF LVYTV+ +A DPK+ S    +  +AP+ IGF      L   P +G  +NPA+S   AV
Sbjct:   68 LFVAVAIGANISGGHVNPAVTFGLALGGQITILTGVFYWIAQLLGAIVGAVLVQFCTGVATPTHG------LSGVGAFEGVVMEIIVTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILVAGPFSGGSMNPARSFGPAV 205          
BLAST of CF832939 vs. ExPASy Swiss-Prot
Match: TIP13_ARATH (Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.201e-18
Identity = 58/162 (35.80%), Postives = 85/162 (52.47%), Query Frame = 3
Query:    3 IFVLFYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVF-SATDPKRSSRDSHVPVLAPLPIGFAEYMVHLATIPITGTGINPAKSLRAAVIYNKDMAWDDPWLF 485
            +FV     A +SGGH+NPAVTFG F+   ++L+RA++Y +AQ LGA+    L+K       T     A  L+ G +    +  EI+ TF LVYTV+ +A DPK+      + ++APL IG       L      G  +NPA S   AV+      W + W++
Sbjct:   69 LFVAVSVGANVSGGHVNPAVTFGAFIGGNITLLRAILYWIAQLLGAVVACLLLKVSTGGMET----AAFSLSYGVTPWNAVVFEIVMTFGLVYTVYATAVDPKKGD----IGIIAPLAIGLIVGANILVGGAFDGASMNPAVSFGPAVV---SWIWTNHWVY 219          
BLAST of CF832939 vs. ExPASy Swiss-Prot
Match: TIP21_ARATH (Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 7.166e-18
Identity = 62/151 (41.06%), Postives = 86/151 (56.95%), Query Frame = 3
Query:    3 IFVLFYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGA---NELADGYSTGVGLAAEIIGTFVLVYTVF-SATDPKRSSRDSHVPVLAPLPIGFAEYMVHLATIPITGTGINPAKSLRAAV 443
            +FV     A ISGGH+NPAVTFGL +  +++++  V Y +AQ LG+ +   L+K     Y T  GG A   + +A G  +  G+  EII TF LVYTV+ +A DPK+ S    +  +APL IG       LA  P +G  +NPA+S   AV
Sbjct:   67 LFVAVAIGANISGGHVNPAVTFGLAVGGQITVITGVFYWIAQLLGSTAACFLLK-----YVT--GGLAVPTHSVAAGLGSIEGVVMEIIITFALVYTVYATAADPKKGS----LGTIAPLAIGLIVGANILAAGPFSGGSMNPARSFGPAV 206          
BLAST of CF832939 vs. ExPASy Swiss-Prot
Match: TIP23_MAIZE (Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 9.359e-18
Identity = 59/148 (39.86%), Postives = 79/148 (53.38%), Query Frame = 3
Query:    3 IFVLFYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVF-SATDPKRSSRDSHVPVLAPLPIGFAEYMVHLATIPITGTGINPAKSLRAAV 443
            +FV     A ISGGH+NPAVTFGL +   ++++  ++Y VAQ LGA      V  F   Y T           G S   G+  EI+ TF LVYTV+ +A DPK+ S    +  +AP+ IGF      LA  P +G  +NPA+S   AV
Sbjct:   67 LFVGVSMAANISGGHLNPAVTFGLAVGGHITILTGILYWVAQLLGA-----SVACFLLQYVTHGQAIPTHGVSGISEIEGVVMEIVITFALVYTVYATAADPKKGS----LGTIAPMAIGFIVGANILAAGPFSGGSMNPARSFGPAV 205          
BLAST of CF832939 vs. ExPASy Swiss-Prot
Match: AQP2_HUMAN (Aquaporin-2 OS=Homo sapiens GN=AQP2 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 9.359e-18
Identity = 56/151 (37.09%), Postives = 80/151 (52.98%), Query Frame = 3
Query:   33 ISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSSRDSHVPVLAPLPIGFAEYMVHLATIPITGTGINPAKSLRAAVIYNKDMAWDDPWLF 485
            ISG HINPAVT    +   VS++RA  Y+ AQ LGA++G  L+     +   R     N L++  + G  +  E+  T  LV  +F++TD +R       P    L IGF+  + HL  I  TG  +NPA+SL  AV+  K   +DD W+F
Sbjct:   62 ISGAHINPAVTVACLVGCHVSVLRAAFYVAAQLLGAVAGAALLHEITPA-DIRGDLAVNALSNSTTAGQAVTVELFLTLQLVLCIFASTDERRGEN----PGTPALSIGFSVALGHLLGIHYTGCSMNPARSLAPAVVTGK---FDDHWVF 204          
BLAST of CF832939 vs. ExPASy Swiss-Prot
Match: TIP31_ARATH (Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.222e-17
Identity = 58/162 (35.80%), Postives = 81/162 (50.00%), Query Frame = 3
Query:    3 IFVLFYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSA-TDPKRSSRDSHVPVLAPLPIGFAEYMVHLATIPITGTGINPAKSLRAAVIYNKDMAWDDPWLF 485
            +F        +SGGH+NPAVTFG  +  +V+ +RA+ Y +AQ LGAI    L++                LA G     GL  EII TF LVY V+S   DPKR S    + ++APL IG       L   P +G  +NPA++   A++      W D W++
Sbjct:   77 LFAAVSAAINVSGGHVNPAVTFGALVGGRVTAIRAIYYWIAQLLGAILACLLLRLTTNGMRP----VGFRLASGVGAVNGLVLEIILTFGLVYVVYSTLIDPKRGS----LGIIAPLAIGLIVGANILVGGPFSGASMNPARAFGPALV---GWRWHDHWIY 227          
BLAST of CF832939 vs. ExPASy Swiss-Prot
Match: TIP32_MAIZE (Aquaporin TIP3-2 OS=Zea mays GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.596e-17
Identity = 58/156 (37.18%), Postives = 80/156 (51.28%), Query Frame = 3
Query:   33 ISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGAN----ELADGYSTGVGLAAEIIGTFVLVYTVF-SATDPKRSSRDSHVPVLAPLPIGFAEYMVHLATIPITGTGINPAKSLRAAVIYNKDMAWDDPWLF 485
            +SGGH+NPAVTFG  +  +VSLVRAV+Y  AQ LGA++   L++           GGA      LA G   G  +  E + TF  VY  + +  DPKR     H+  +APL +GF      LA  P  G G+NPA+    A++      W   W++
Sbjct:   88 VSGGHVNPAVTFGALVGGRVSLVRAVLYWAAQLLGAVAATLLLRLAT--------GGARPPGFALASGVGDGHAVLLEAVMTFGFVYAYYATVVDPKR----GHLGTIAPLAVGFLLGANVLAGGPFDGAGMNPARVFGPALV---GWRWRHHWVY 228          
BLAST of CF832939 vs. ExPASy Swiss-Prot
Match: TIP32_ARATH (Probable aquaporin TIP3-2 OS=Arabidopsis thaliana GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.596e-17
Identity = 57/162 (35.19%), Postives = 82/162 (50.62%), Query Frame = 3
Query:    3 IFVLFYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFS-ATDPKRSSRDSHVPVLAPLPIGFAEYMVHLATIPITGTGINPAKSLRAAVIYNKDMAWDDPWLF 485
            +F        +SGGH+NPAVTF   +  ++S++RA+ Y VAQ +GAI    L++                +A G S   GL  EII TF LVY V+S A DPKR S    + ++APL IG       L   P  G  +NPA++   A++      W + W++
Sbjct:   77 LFAAVSAAINVSGGHVNPAVTFAALIGGRISVIRAIYYWVAQLIGAILACLLLRLATNGLRP----VGFHVASGVSELHGLLMEIILTFALVYVVYSTAIDPKRGS----IGIIAPLAIGLIVGANILVGGPFDGASMNPARAFGPALV---GWRWSNHWIY 227          
BLAST of CF832939 vs. ExPASy Swiss-Prot
Match: TIP31_MAIZE (Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.596e-17
Identity = 59/156 (37.82%), Postives = 82/156 (52.56%), Query Frame = 3
Query:   33 ISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVG----LAAEIIGTFVLVYTVFSAT-DPKRSSRDSHVPVLAPLPIGFAEYMVHLATIPITGTGINPAKSLRAAVIYNKDMAWDDPWLF 485
            ISGGH+NPAVTFG  +  +VSLVRAV+Y VAQ LGA++   L++           GG        ++GVG    +  E + TF L+Y  ++   DPKR     HV  +APL +GF      LA  P  G G+NPA+    A++      W   W++
Sbjct:   83 ISGGHVNPAVTFGALVGGRVSLVRAVLYWVAQLLGAVAATLLLRLAT--------GGMRPPGFALASGVGDWHAVLLEAVMTFGLMYAYYATVIDPKR----GHVGTIAPLAVGFLLGANVLAGGPFDGAGMNPARVFGPALV---GWRWRHHWVY 223          
The following BLAST results are available for this feature:
BLAST of CF832939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 150
Match NameE-valueIdentityDescription
TIP11_ARATH2.463e-1836.75Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1... [more]
TIP22_ORYSJ4.201e-1840.54Probable aquaporin TIP2-2 OS=Oryza sativa subsp. j... [more]
TIP13_ARATH4.201e-1835.80Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3... [more]
TIP21_ARATH7.166e-1841.06Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1... [more]
TIP23_MAIZE9.359e-1839.86Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2[more]
AQP2_HUMAN9.359e-1837.09Aquaporin-2 OS=Homo sapiens GN=AQP2 PE=1 SV=1[more]
TIP31_ARATH1.222e-1735.80Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1... [more]
TIP32_MAIZE1.596e-1737.18Aquaporin TIP3-2 OS=Zea mays GN=TIP3-2 PE=2 SV=1[more]
TIP32_ARATH1.596e-1735.19Probable aquaporin TIP3-2 OS=Arabidopsis thaliana ... [more]
TIP31_MAIZE1.596e-1737.82Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02L06_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02L06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832939 ID=CF832939; Name=CF832939; organism=Citrus sinensis; type=EST; length=486bp
TGATCTTTGTCCTCTTTTACTGCACCGCCGGTATCTCAGGTGGTCACATT
AACCCGGCAGTGACGTTCGGACTATTCTTGGCCCGCAAGGTGTCGTTGGT
CCGTGCTGTGATGTACATGGTGGCGCAGTGCCTTGGTGCAATCTCCGGCG
TTGGGTTGGTCAAGGCTTTCCAAAAATCTTACTACACAAGGTACGGAGGA
GGGGCCAACGAGCTGGCCGATGGGTACAGCACAGGCGTTGGATTGGCCGC
CGAGATCATCGGCACCTTTGTGTTGGTTTACACTGTCTTCTCGGCCACTG
ATCCCAAAAGAAGCTCCAGAGACTCCCATGTCCCCGTTTTGGCACCGCTC
CCCATTGGATTTGCTGAGTACATGGTACACTTGGCCACAATCCCAATCAC
TGGCACTGGCATTAACCCAGCAAAGAGTCTCCGGGCCGCTGTTATTTACA
ATAAGGACATGGCTTGGGATGATCCATGGCTCTTCT
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