CF832949

Overview
NameCF832949
Unique NameCF832949
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length601
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832949 vs. ExPASy Swiss-Prot
Match: PGK_MYCS2 (Phosphoglycerate kinase OS=Mycobacterium smegmatis GN=pgk PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.814e-27
Identity = 60/112 (53.57%), Postives = 76/112 (67.86%), Query Frame = -1
Query:  269 KVVPATAIPDGWMGLDVGPDALKSFREGLDSTKTIIWNGPMGGFEFDKFAGGPEAIAKKLAELSGKGVPPIIGGGDSVAPVEKVGL-GDKMSHISPGGGASLELLEGKTLPG 601
            + V A  IPDG MGLD+GP +++ F   L + KT+ WNGPMG FEF  FA G + +A+ +   +GKG   ++GGGDS A V ++GL  D  SHIS GGGASLE LEGK LPG
Sbjct:  291 ETVAADRIPDGKMGLDIGPGSVERFTALLSNAKTVFWNGPMGVFEFPAFAAGTKGVAEAIIGATGKGAFSVVGGGDSAAAVRRLGLPEDGFSHISTGGGASLEYLEGKELPG 402          
BLAST of CF832949 vs. ExPASy Swiss-Prot
Match: PGK_MYCLE (Phosphoglycerate kinase OS=Mycobacterium leprae GN=pgk PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.814e-27
Identity = 58/112 (51.79%), Postives = 77/112 (68.75%), Query Frame = -1
Query:  269 KVVPATAIPDGWMGLDVGPDALKSFREGLDSTKTIIWNGPMGGFEFDKFAGGPEAIAKKLAELSGKGVPPIIGGGDSVAPVEKVGLGD-KMSHISPGGGASLELLEGKTLPG 601
            + V A AIPDG MGLD+GP+++K F   L +  TI WNGPMG FEF  +A G   +A+ +  ++GKG   ++GGGDS A +  + L +  +SH+S GGGASLE LEGKTLPG
Sbjct:  291 QTVAADAIPDGLMGLDIGPESVKRFATLLSNASTIFWNGPMGVFEFPAYAAGTRGVAEAIVAVTGKGAFSVVGGGDSAAAMRALSLPEGSVSHLSTGGGASLEYLEGKTLPG 402          
BLAST of CF832949 vs. ExPASy Swiss-Prot
Match: PGK_MYCLB (Phosphoglycerate kinase OS=Mycobacterium leprae (strain Br4923) GN=pgk PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.814e-27
Identity = 58/112 (51.79%), Postives = 77/112 (68.75%), Query Frame = -1
Query:  269 KVVPATAIPDGWMGLDVGPDALKSFREGLDSTKTIIWNGPMGGFEFDKFAGGPEAIAKKLAELSGKGVPPIIGGGDSVAPVEKVGLGD-KMSHISPGGGASLELLEGKTLPG 601
            + V A AIPDG MGLD+GP+++K F   L +  TI WNGPMG FEF  +A G   +A+ +  ++GKG   ++GGGDS A +  + L +  +SH+S GGGASLE LEGKTLPG
Sbjct:  291 QTVAADAIPDGLMGLDIGPESVKRFATLLSNASTIFWNGPMGVFEFPAYAAGTRGVAEAIVAVTGKGAFSVVGGGDSAAAMRALSLPEGSVSHLSTGGGASLEYLEGKTLPG 402          
BLAST of CF832949 vs. ExPASy Swiss-Prot
Match: PGK_CHLPD (Phosphoglycerate kinase OS=Chlorobium phaeobacteroides (strain DSM 266) GN=pgk PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.814e-27
Identity = 56/110 (50.91%), Postives = 74/110 (67.27%), Query Frame = -1
Query:  269 VVPATAIPDGWMGLDVGPDALKSFREGLDSTKTIIWNGPMGGFEFDKFAGGPEAIAKKLAELSGKGVPPIIGGGDSVAPVEKVGLGDKMSHISPGGGASLELLEGKTLPG 598
            V    ++ DG +G+D+GP  ++ +R  + + +T++WNGPMG FE D FA G  AIAK LAE +  G   I+GGGDS A + K  L D ++HIS GGGASLE LEGK LPG
Sbjct:  282 VEAVNSMSDGMIGVDIGPKTIEKYRNEILAARTVLWNGPMGVFEIDNFAEGTFAIAKALAEATSSGAITIVGGGDSAAAIAKAALSDSITHISTGGGASLEFLEGKALPG 391          
BLAST of CF832949 vs. ExPASy Swiss-Prot
Match: PGK_BEUC1 (Phosphoglycerate kinase OS=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) GN=pgk PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.814e-27
Identity = 61/118 (51.69%), Postives = 79/118 (66.95%), Query Frame = -1
Query:  251 KVVPATAIPDGWMGLDVGPDALKSFREGLDSTKTIIWNGPMGGFEFDKFAGGPEAIAKKLAELSGKGVPPIIGGGDSVAPVEKVGLGDK-MSHISPGGGASLELLEGKTLPGGLVFDD 601
            +VV A AIP   +GLD+GP++ ++F   +   KT++WNGPMG FEFD FA G  A+A+ L + +  G   I+GGGDS A V  +G  +   SHIS GGGASLE LEGKTLPG  V +D
Sbjct:  282 QVVAADAIPADSIGLDIGPESGEAFAAVIRGAKTVVWNGPMGVFEFDAFAAGTRAVAQGLTDATAAGAFTIVGGGDSAAAVRSLGFDEAGFSHISTGGGASLEFLEGKTLPGLAVLED 399          
BLAST of CF832949 vs. ExPASy Swiss-Prot
Match: PGK_BACCN (Phosphoglycerate kinase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=pgk PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.814e-27
Identity = 56/117 (47.86%), Postives = 78/117 (66.67%), Query Frame = -1
Query:  251 KVVPATAIPDGWMGLDVGPDALKSFREGLDSTKTIIWNGPMGGFEFDKFAGGPEAIAKKLAELSGKGVPPIIGGGDSVAPVEKVGLGDKMSHISPGGGASLELLEGKTLPGGLVFDD 601
            K+V   +IP  W G+D+GP   + + + + ++K ++WNGPMG FE   F+ G  A+ + LA+   +G   +IGGGDS A VEK G+ DKMSHIS GGGASLE +EGK LPG +  +D
Sbjct:  279 KIVDIDSIPSNWEGVDIGPKTREIYADVIKNSKLVVWNGPMGVFEMTPFSNGTRAVGQALAD--AEGTYSVIGGGDSAAAVEKFGMADKMSHISTGGGASLEFMEGKELPGVVCLND 393          
BLAST of CF832949 vs. ExPASy Swiss-Prot
Match: PGK_MYCA9 (Phosphoglycerate kinase OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=pgk PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.288e-27
Identity = 62/118 (52.54%), Postives = 77/118 (65.25%), Query Frame = -1
Query:  251 KVVPATAIPDGWMGLDVGPDALKSFREGLDSTKTIIWNGPMGGFEFDKFAGGPEAIAKKLAELSGKGVPPIIGGGDSVAPVEKVGL-GDKMSHISPGGGASLELLEGKTLPGGLVFDD 601
            ++V A AIPD  MGLD+GP+++K F   L + KTI WNGPMG FEF  FA G   +A+ +   + KG   ++GGGDS A V  + L  D  SHIS GGGASLE LEGK LPG  V +D
Sbjct:  295 EIVAADAIPDSKMGLDIGPESVKRFAAVLSNAKTIFWNGPMGVFEFPAFAAGTRGVAEAIIAATEKGAFSVVGGGDSAAAVRALDLPDDGFSHISTGGGASLEYLEGKVLPGIDVLED 412          
BLAST of CF832949 vs. ExPASy Swiss-Prot
Match: PGK_YEAST (Phosphoglycerate kinase OS=Saccharomyces cerevisiae GN=PGK1 PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 8.212e-27
Identity = 58/110 (52.73%), Postives = 73/110 (66.36%), Query Frame = -1
Query:  269 VVPATAIPDGWMGLDVGPDALKSFREGLDSTKTIIWNGPMGGFEFDKFAGGPEAIAKKLAELSGKGVPPIIGGGDSVAPVEKVGLGDKMSHISPGGGASLELLEGKTLPG 598
            V     IP GW GLD GP++ K F   +   KTI+WNGP G FEF+KFA G +A+  ++ + S  G   IIGGGD+    +K G+ DK+SH+S GGGASLELLEGK LPG
Sbjct:  299 VTDKEGIPAGWQGLDNGPESRKLFAATVAKAKTIVWNGPPGVFEFEKFAAGTKALLDEVVKSSAAGNTVIIGGGDTATVAKKYGVTDKISHVSTGGGASLELLEGKELPG 408          
BLAST of CF832949 vs. ExPASy Swiss-Prot
Match: PGK_CANMA (Phosphoglycerate kinase OS=Candida maltosa GN=PGK1 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.212e-27
Identity = 58/106 (54.72%), Postives = 72/106 (67.92%), Query Frame = -1
Query:  269 TAIPDGWMGLDVGPDALKSFREGLDSTKTIIWNGPMGGFEFDKFAGGPEAIAKKLAELSGKGVPPIIGGGDSVAPVEKVGLGDKMSHISPGGGASLELLEGKTLPG 586
            T IPD WMGLD GP + K F + +   KTI+WNGP G FEFDKFA G +++     + +  G   IIGGGD+    +K G+ DK+SH+S GGGASLELLEGK LPG
Sbjct:  304 TGIPDKWMGLDCGPKSRKLFADAVAKAKTIVWNGPPGVFEFDKFAEGTKSLLDDAVKSAEVGNIVIIGGGDTATVAKKYGVVDKLSHVSTGGGASLELLEGKELPG 409          
BLAST of CF832949 vs. ExPASy Swiss-Prot
Match: PGK_BACHK (Phosphoglycerate kinase OS=Bacillus thuringiensis subsp. konkukian GN=pgk PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.212e-27
Identity = 56/117 (47.86%), Postives = 79/117 (67.52%), Query Frame = -1
Query:  251 KVVPATAIPDGWMGLDVGPDALKSFREGLDSTKTIIWNGPMGGFEFDKFAGGPEAIAKKLAELSGKGVPPIIGGGDSVAPVEKVGLGDKMSHISPGGGASLELLEGKTLPGGLVFDD 601
            K+V   +IP  W G+D+GP   + + + + ++K ++WNGPMG FE   F+ G +A+ + LA+   +G   +IGGGDS A VEK G+ DKMSHIS GGGASLE +EGK LPG +  +D
Sbjct:  279 KIVGIDSIPSNWEGVDIGPKTREIYADVIKNSKLVVWNGPMGVFEMTPFSQGTKAVGQALAD--AEGTYSVIGGGDSAAAVEKFGMADKMSHISTGGGASLEFMEGKELPGVVCLND 393          
The following BLAST results are available for this feature:
BLAST of CF832949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_MYCS24.814e-2753.57Phosphoglycerate kinase OS=Mycobacterium smegmatis... [more]
PGK_MYCLE4.814e-2751.79Phosphoglycerate kinase OS=Mycobacterium leprae GN... [more]
PGK_MYCLB4.814e-2751.79Phosphoglycerate kinase OS=Mycobacterium leprae (s... [more]
PGK_CHLPD4.814e-2750.91Phosphoglycerate kinase OS=Chlorobium phaeobactero... [more]
PGK_BEUC14.814e-2751.69Phosphoglycerate kinase OS=Beutenbergia cavernae (... [more]
PGK_BACCN4.814e-2747.86Phosphoglycerate kinase OS=Bacillus cereus subsp. ... [more]
PGK_MYCA96.288e-2752.54Phosphoglycerate kinase OS=Mycobacterium abscessus... [more]
PGK_YEAST8.212e-2752.73Phosphoglycerate kinase OS=Saccharomyces cerevisia... [more]
PGK_CANMA8.212e-2754.72Phosphoglycerate kinase OS=Candida maltosa GN=PGK1... [more]
PGK_BACHK8.212e-2747.86Phosphoglycerate kinase OS=Bacillus thuringiensis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02L15_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02L15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832949 ID=CF832949; Name=CF832949; organism=Citrus sinensis; type=EST; length=601bp
TTTTTTTTTTTTTTTTTCCCCGAAACTTAAACCCTTACCATCACAATGTT
CCAAAAGGGGATCAAATCCAAAAAAATGCCTCCCCATTGATGCCTGGGAA
AAAAAATTTATTTTTACTCTTACAGCATCTACAAAACCAACTCTAATGAT
AAAGTTTAACTTTTATCCCCTCGGGGGTGACAACCACCCACACATACAAC
TCTGGAAATGGCCCATTTAAAAAAGGAAAGCCCAGGAACTGGGTTTAAGC
ATCATCAAAAACAAGCCCCCCAGGGAGTGTTTTGCCCTCAAGGAGCTCTA
AGCTGGCTCCCCCTCCAGGGGAAATATGGCTCATCTTGTCACCCAAACCA
ACCTTCTCTACGGGTGCAACTGAGTCACCCCCCCCAATGATGGGGGGCAC
TCCCTTCCCGCTGAGCTCCGCAAGCTTTTTGGCAATTGCCTCAGGGCCAC
CAGCAAATTTATCAAATTCAAACCCCCCCATAGGTCCATTCCAAATGATG
GTTTTAGTAGAATCCAAACCTTCCCTGAATGACTTGAGGGCATCAGGGCC
AACATCCAAGCCCATCCAACCATCTGGAATTGCCGTTGCTGGCACCACCT
T
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