CF832949

Overview
NameCF832949
Unique NameCF832949
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length601
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2633 contig Csv1_Contig2633:76..676. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832949 vs. ExPASy Swiss-Prot
Match: PGK_NOCFA (Phosphoglycerate kinase OS=Nocardia farcinica GN=pgk PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.599e-30
Identity = 65/118 (55.08%), Postives = 79/118 (66.95%), Query Frame = -1
Query:  251 KVVPATAIPDGWMGLDVGPDALKSFREGLDSTKTIIWNGPMGGFEFDKFAGGPEAIAKKLAELSGKGVPPIIGGGDSVAPVEKVGL-GDKMSHISPGGGASLELLEGKTLPGGLVFDD 601
            K VPA  IPDGWMGLD+G +++  F   L   KT+ WNGPMG FEF+KFA G   +A+ +   +GKG   ++GGGDS A V  +GL  D  SHIS GGGASLE LEGK LPG  V +D
Sbjct:  287 KCVPANEIPDGWMGLDIGAESVDRFAALLTEAKTVFWNGPMGVFEFEKFAAGTRGVAEAIVAATGKGAFTVVGGGDSAAAVRALGLPEDGFSHISTGGGASLEYLEGKELPGISVLED 404          
BLAST of CF832949 vs. ExPASy Swiss-Prot
Match: PGK_CHLSY (Phosphoglycerate kinase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=pgk PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.599e-30
Identity = 63/118 (53.39%), Postives = 81/118 (68.64%), Query Frame = -1
Query:  248 KVVPATAIPDGWMGLDVGPDALKSFREGLDSTKTIIWNGPMGGFEFDKFAGGPEAIAKKLAELSGKGVPPIIGGGDSVAPVEKVGLGDKMSHISPGGGASLELLEGKTLPGGLVFDDA 601
            +VV  + IP GW  LD+GP  ++ +   + + +T+IWNGPMG FE + FA G  AIA+ +AE +  G   I+GGGDSVA VE+ GL DKMSH+S GGGASLELLEG+ LPG     DA
Sbjct:  282 QVVDVSDIPAGWRVLDIGPKTIERYSAEIRAARTVIWNGPMGVFELEPFAVGTRAIAQAMAEAAANGAITIVGGGDSVAAVEQAGLADKMSHVSTGGGASLELLEGRVLPGVAALQDA 399          
BLAST of CF832949 vs. ExPASy Swiss-Prot
Match: PGK_CHLAA (Phosphoglycerate kinase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=pgk PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.599e-30
Identity = 63/118 (53.39%), Postives = 81/118 (68.64%), Query Frame = -1
Query:  248 KVVPATAIPDGWMGLDVGPDALKSFREGLDSTKTIIWNGPMGGFEFDKFAGGPEAIAKKLAELSGKGVPPIIGGGDSVAPVEKVGLGDKMSHISPGGGASLELLEGKTLPGGLVFDDA 601
            +VV  + IP GW  LD+GP  ++ +   + + +T+IWNGPMG FE + FA G  AIA+ +AE +  G   I+GGGDSVA VE+ GL DKMSH+S GGGASLELLEG+ LPG     DA
Sbjct:  282 QVVDVSDIPAGWRVLDIGPKTIERYSAEIRAARTVIWNGPMGVFELEPFAVGTRAIAQAMAEAAANGAITIVGGGDSVAAVEQAGLADKMSHVSTGGGASLELLEGRVLPGVAALQDA 399          
BLAST of CF832949 vs. ExPASy Swiss-Prot
Match: PGK_THEAB (Phosphoglycerate kinase OS=Thermosipho africanus (strain TCF52B) GN=pgk PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.088e-30
Identity = 59/104 (56.73%), Postives = 75/104 (72.12%), Query Frame = -1
Query:  269 IPDGWMGLDVGPDALKSFREGLDSTKTIIWNGPMGGFEFDKFAGGPEAIAKKLAELSGKGVPPIIGGGDSVAPVEKVGLGDKMSHISPGGGASLELLEGKTLPG 580
            +P+GWMGLD+GP  ++ FR  +   KTI+WNGPMG FE + F+ G + +A  +AE + KG   IIGGGDS A + K GL DK+SH+S GGGASLE LEGK LPG
Sbjct:  287 LPEGWMGLDIGPKTVELFRNSISGAKTIVWNGPMGVFEIEDFSNGTKEVAIAIAEETSKGATTIIGGGDSAAAIAKFGLKDKVSHVSTGGGASLEFLEGKELPG 390          
BLAST of CF832949 vs. ExPASy Swiss-Prot
Match: PGK_RHOE4 (Phosphoglycerate kinase OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=pgk PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.088e-30
Identity = 63/117 (53.85%), Postives = 80/117 (68.38%), Query Frame = -1
Query:  254 KVVPATAIPDGWMGLDVGPDALKSFREGLDSTKTIIWNGPMGGFEFDKFAGGPEAIAKKLAELSGKGVPPIIGGGDSVAPVEKVGLGDK-MSHISPGGGASLELLEGKTLPGGLVFD 601
            K+VP   IPDGWMGLD+GP+++K F   L   KT+ WNGPMG FEF KF  G   +A+ + E + KG   ++GGGDS A V ++G+ D+  SHIS GGGASLE LEGK LPG  V +
Sbjct:  286 KIVPFDKIPDGWMGLDIGPESVKRFAAILTGAKTVFWNGPMGVFEFPKFEAGTRGVAEAIVEATEKGAFSVVGGGDSAAAVRQLGIPDEGFSHISTGGGASLEYLEGKELPGIAVLE 402          
BLAST of CF832949 vs. ExPASy Swiss-Prot
Match: PGK_RUBXD (Phosphoglycerate kinase OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=pgk PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.727e-30
Identity = 63/117 (53.85%), Postives = 80/117 (68.38%), Query Frame = -1
Query:  251 KVVPATAIPDGWMGLDVGPDALKSFREGLDSTKTIIWNGPMGGFEFDKFAGGPEAIAKKLAELSGKGVPPIIGGGDSVAPVEKVGLGDKMSHISPGGGASLELLEGKTLPGGLVFDD 601
            + VP   IP+GWMGLD+GP  ++ FR  +   +TI WNGPMG FE D FA G E +A+ +AE    G   ++GGGDSVA V K+GL D+MSHIS GGGASLE +EG+ LPG  V  +
Sbjct:  275 RTVPVEEIPEGWMGLDIGPRTVELFRRHILQARTIFWNGPMGVFEIDAFARGTEGVARAVAE---SGATSVVGGGDSVAAVRKLGLEDRMSHISTGGGASLEYVEGRELPGVAVLPE 388          
BLAST of CF832949 vs. ExPASy Swiss-Prot
Match: PGK_MOOTA (Phosphoglycerate kinase OS=Moorella thermoacetica (strain ATCC 39073) GN=pgk PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.727e-30
Identity = 60/111 (54.05%), Postives = 80/111 (72.07%), Query Frame = -1
Query:  269 KVVPATAIPDGWMGLDVGPDALKSFREGLDSTKTIIWNGPMGGFEFDKFAGGPEAIAKKLAELSGKGVPPIIGGGDSVAPVEKVGLGDKMSHISPGGGASLELLEGKTLPG 601
            +VV   A+PDGWM LD+GP+  +++   L+  +T++WNGPMG FE + FA G EA+A+ +A + G     I+GGGDSVA VEK+G+  K+ HIS GGGASLE LEGK LPG
Sbjct:  279 QVVAVNAVPDGWMALDIGPETARAYAGALEGARTVVWNGPMGVFEMEAFAHGTEAVARAVAAVDGM---TIVGGGDSVAAVEKMGVAGKIGHISTGGGASLEFLEGKALPG 386          
BLAST of CF832949 vs. ExPASy Swiss-Prot
Match: PGK_DEIDV (Phosphoglycerate kinase OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=pgk PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.727e-30
Identity = 61/111 (54.95%), Postives = 77/111 (69.37%), Query Frame = -1
Query:  269 KVVPATAIPDGWMGLDVGPDALKSFREGLDSTKTIIWNGPMGGFEFDKFAGGPEAIAKKLAELSGKGVPPIIGGGDSVAPVEKVGLGDKMSHISPGGGASLELLEGKTLPG 601
            +VVPA  IP+GWMGLD+GPD  +++ E L   KT+ WNGPMG FEF  FA G  A+A  +  L  +    ++GGGDSV+ + K G  D++ HIS GGGASLELLEGK LPG
Sbjct:  275 RVVPADQIPEGWMGLDIGPDTQQAYTEALRGAKTVFWNGPMGVFEFPAFAAGTNAVAAAVGSLKNQAY-TVVGGGDSVSAINKSGKADQIDHISTGGGASLELLEGKALPG 384          
BLAST of CF832949 vs. ExPASy Swiss-Prot
Match: PGK_BREBN (Phosphoglycerate kinase OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=pgk PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.727e-30
Identity = 64/117 (54.70%), Postives = 81/117 (69.23%), Query Frame = -1
Query:  251 KVVPATAIPDGWMGLDVGPDALKSFREGLDSTKTIIWNGPMGGFEFDKFAGGPEAIAKKLAELSGKGVPPIIGGGDSVAPVEKVGLGDKMSHISPGGGASLELLEGKTLPGGLVFDD 601
            +VV   AIP+GWM LD+GP  ++ +   +  +KT++WNGPMG FE D FAGG   +AK +A  SG     IIGGGDSVA VEK G+ ++M+HIS GGGASLE +EGK LPG  V  D
Sbjct:  279 QVVAIDAIPEGWMALDIGPKTVEQYHSVIVDSKTVVWNGPMGVFEMDAFAGGTIGVAKAMAACSG---TTIIGGGDSVAAVEKAGVAEQMTHISTGGGASLEFMEGKELPGVAVLAD 392          
BLAST of CF832949 vs. ExPASy Swiss-Prot
Match: PGK_CORK4 (Phosphoglycerate kinase OS=Corynebacterium kroppenstedtii (strain DSM 44385 / CCUG 35717) GN=pgk PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.562e-30
Identity = 64/117 (54.70%), Postives = 81/117 (69.23%), Query Frame = -1
Query:  254 KVVPATAIPDGWMGLDVGPDALKSFREGLDSTKTIIWNGPMGGFEFDKFAGGPEAIAKKLAELSGKGVPPIIGGGDSVAPVEKVGLGDK-MSHISPGGGASLELLEGKTLPGGLVFD 601
            K V A  I DGWMGLD G +++K+F E L+  KTI WNGP+G FEF+ FA G + +A+ +AE +  G   +IGGGDS + V  +G  D+  SHIS GGGASLEL+EGKTLPG  V D
Sbjct:  286 KTVSADGIEDGWMGLDTGAESIKTFGERLNGAKTIFWNGPVGVFEFEAFANGTKGLAEAIAEATKNGAFSVIGGGDSASAVRNLGFADEAFSHISTGGGASLELIEGKTLPGVAVLD 402          
The following BLAST results are available for this feature:
BLAST of CF832949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_NOCFA1.599e-3055.08Phosphoglycerate kinase OS=Nocardia farcinica GN=p... [more]
PGK_CHLSY1.599e-3053.39Phosphoglycerate kinase OS=Chloroflexus aurantiacu... [more]
PGK_CHLAA1.599e-3053.39Phosphoglycerate kinase OS=Chloroflexus aurantiacu... [more]
PGK_THEAB2.088e-3056.73Phosphoglycerate kinase OS=Thermosipho africanus (... [more]
PGK_RHOE42.088e-3053.85Phosphoglycerate kinase OS=Rhodococcus erythropoli... [more]
PGK_RUBXD2.727e-3053.85Phosphoglycerate kinase OS=Rubrobacter xylanophilu... [more]
PGK_MOOTA2.727e-3054.05Phosphoglycerate kinase OS=Moorella thermoacetica ... [more]
PGK_DEIDV2.727e-3054.95Phosphoglycerate kinase OS=Deinococcus deserti (st... [more]
PGK_BREBN2.727e-3054.70Phosphoglycerate kinase OS=Brevibacillus brevis (s... [more]
PGK_CORK43.562e-3054.70Phosphoglycerate kinase OS=Corynebacterium kroppen... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02L15_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02L15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832949 ID=CF832949; Name=CF832949; organism=Citrus sinensis; type=EST; length=601bp
TTTTTTTTTTTTTTTTTCCCCGAAACTTAAACCCTTACCATCACAATGTT
CCAAAAGGGGATCAAATCCAAAAAAATGCCTCCCCATTGATGCCTGGGAA
AAAAAATTTATTTTTACTCTTACAGCATCTACAAAACCAACTCTAATGAT
AAAGTTTAACTTTTATCCCCTCGGGGGTGACAACCACCCACACATACAAC
TCTGGAAATGGCCCATTTAAAAAAGGAAAGCCCAGGAACTGGGTTTAAGC
ATCATCAAAAACAAGCCCCCCAGGGAGTGTTTTGCCCTCAAGGAGCTCTA
AGCTGGCTCCCCCTCCAGGGGAAATATGGCTCATCTTGTCACCCAAACCA
ACCTTCTCTACGGGTGCAACTGAGTCACCCCCCCCAATGATGGGGGGCAC
TCCCTTCCCGCTGAGCTCCGCAAGCTTTTTGGCAATTGCCTCAGGGCCAC
CAGCAAATTTATCAAATTCAAACCCCCCCATAGGTCCATTCCAAATGATG
GTTTTAGTAGAATCCAAACCTTCCCTGAATGACTTGAGGGCATCAGGGCC
AACATCCAAGCCCATCCAACCATCTGGAATTGCCGTTGCTGGCACCACCT
T
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