CF832949

Overview
NameCF832949
Unique NameCF832949
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length601
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832949 vs. ExPASy Swiss-Prot
Match: PGK_CHLT3 (Phosphoglycerate kinase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=pgk PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.938e-29
Identity = 59/111 (53.15%), Postives = 77/111 (69.37%), Query Frame = -1
Query:  269 KVVPATAIPDGWMGLDVGPDALKSFREGLDSTKTIIWNGPMGGFEFDKFAGGPEAIAKKLAELSGKGVPPIIGGGDSVAPVEKVGLGDKMSHISPGGGASLELLEGKTLPG 601
            K+    +I D WMGLD+GP+    FRE + + KT+IWNGPMG FE +KFA G  A+A+ LA+ + +G   +IGGGDS A +   GL D ++H+S GGGASLE LEGK LPG
Sbjct:  280 KIATIDSIEDDWMGLDIGPETANCFREEVVNAKTVIWNGPMGVFEMEKFAKGTMAVAQALADATKQGAITVIGGGDSAAAIAVAGLEDSVTHVSTGGGASLEFLEGKELPG 390          
BLAST of CF832949 vs. ExPASy Swiss-Prot
Match: PGK_CHLP8 (Phosphoglycerate kinase OS=Chlorobaculum parvum (strain NCIB 8327) GN=pgk PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.938e-29
Identity = 60/117 (51.28%), Postives = 80/117 (68.38%), Query Frame = -1
Query:  251 KVVPATAIPDGWMGLDVGPDALKSFREGLDSTKTIIWNGPMGGFEFDKFAGGPEAIAKKLAELSGKGVPPIIGGGDSVAPVEKVGLGDKMSHISPGGGASLELLEGKTLPGGLVFDD 601
            +V P T I DG  GLD+GP  ++++ + +   KT++WNGPMG FE D+FA G  A+A+ LA+ +  G   IIGGGDS A + K GL DK++H+S GGGASLE LEGK LPG    +D
Sbjct:  281 RVEPVTTISDGMSGLDIGPATIETYAKEILGAKTVLWNGPMGVFEIDQFAKGTFAVAQALADATDAGAITIIGGGDSAAAIAKAGLSDKVTHVSTGGGASLEFLEGKELPGIAALND 397          
BLAST of CF832949 vs. ExPASy Swiss-Prot
Match: PGK_BACST (Phosphoglycerate kinase OS=Bacillus stearothermophilus GN=pgk PE=1 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 3.938e-29
Identity = 64/117 (54.70%), Postives = 78/117 (66.67%), Query Frame = -1
Query:  251 KVVPATAIPDGWMGLDVGPDALKSFREGLDSTKTIIWNGPMGGFEFDKFAGGPEAIAKKLAELSGKGVPPIIGGGDSVAPVEKVGLGDKMSHISPGGGASLELLEGKTLPGGLVFDD 601
            KVVP  AIP  W  LD+GP   + +R+ +  +K ++WNGPMG FE D FA G +AIA+ LAE        +IGGGDS A VEK GL DKM HIS GGGASLE +EGK LPG +  +D
Sbjct:  279 KVVPIDAIPADWSALDIGPKTRELYRDVIRESKLVVWNGPMGVFEMDAFAHGTKAIAEALAE--ALDTYSVIGGGDSAAAVEKFGLADKMDHISTGGGASLEFMEGKQLPGVVALED 393          
BLAST of CF832949 vs. ExPASy Swiss-Prot
Match: PGK_TREDE (Phosphoglycerate kinase OS=Treponema denticola GN=pgk PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.144e-29
Identity = 62/110 (56.36%), Postives = 79/110 (71.82%), Query Frame = -1
Query:  269 VVPATAIPDGWMGLDVGPDALKSFREGLDSTKTIIWNGPMGGFEFDKFAGGPEAIAKKLAELSGKGVPPIIGGGDSVAPVEKVGLGDKMSHISPGGGASLELLEGKTLPG 598
            +V +T IPD  MG+DVGP  L  ++E + S+K+I+WNGP+G FEF+ F+ G E  A+ +A  + KG   I+GGGDSVA V K  L DKMSH+S GGGASLE LEGK LPG
Sbjct:  303 LVESTDIPDNLMGMDVGPKTLALYKEIILSSKSIVWNGPVGVFEFEAFSKGTEETARLVAAATEKGALTIVGGGDSVAAVNKFNLADKMSHVSTGGGASLEFLEGKVLPG 412          
BLAST of CF832949 vs. ExPASy Swiss-Prot
Match: PGK_THEM4 (Phosphoglycerate kinase OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=pgk PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.144e-29
Identity = 57/104 (54.81%), Postives = 75/104 (72.12%), Query Frame = -1
Query:  269 IPDGWMGLDVGPDALKSFREGLDSTKTIIWNGPMGGFEFDKFAGGPEAIAKKLAELSGKGVPPIIGGGDSVAPVEKVGLGDKMSHISPGGGASLELLEGKTLPG 580
            IP+GWMGLD+GP+++K F+E +   KTI+WNGPMG FE + F  G + +A  +A  + KG   +IGGGDS A + K  L +K+SH+S GGGASLE LEGK LPG
Sbjct:  287 IPEGWMGLDIGPESIKLFKEKISGAKTIVWNGPMGVFEIEDFETGTKEVAISIAAETEKGATTVIGGGDSAAAIAKFNLKNKVSHVSTGGGASLEFLEGKELPG 390          
BLAST of CF832949 vs. ExPASy Swiss-Prot
Match: PGK_HERA2 (Phosphoglycerate kinase OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=pgk PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.718e-29
Identity = 62/117 (52.99%), Postives = 82/117 (70.09%), Query Frame = -1
Query:  251 KVVPATAIPDGWMGLDVGPDALKSFREGLDSTKTIIWNGPMGGFEFDKFAGGPEAIAKKLAELSGKGVPPIIGGGDSVAPVEKVGLGDKMSHISPGGGASLELLEGKTLPGGLVFDD 601
            +V+    +PDGW  LD+GP+  +++ + +   KT+IWNGPMG FE + FA G  A+A+ LA+ S      IIGGGDSVA +E++GL +KMSHIS GGGASLELLEGK LPG    +D
Sbjct:  280 QVLSIDDVPDGWRILDIGPETRQTYSQVVSEAKTVIWNGPMGVFELEPFAAGTRAVAQALADSSAI---TIIGGGDSVAAIEQMGLAEKMSHISTGGGASLELLEGKVLPGIAALND 393          
BLAST of CF832949 vs. ExPASy Swiss-Prot
Match: PGK_CHICK (Phosphoglycerate kinase OS=Gallus gallus GN=PGK PE=2 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 6.718e-29
Identity = 60/107 (56.07%), Postives = 77/107 (71.96%), Query Frame = -1
Query:  269 ATAIPDGWMGLDVGPDALKSFREGLDSTKTIIWNGPMGGFEFDKFAGGPEAIAKKLAELSGKGVPPIIGGGDSVAPVEKVGLGDKMSHISPGGGASLELLEGKTLPG 589
            A+ IP GWMGLD GP+++K F E +   K I+WNGP+G FE+DKF+ G +A+  K+ E++GKG   IIGGGD+     K    DK+SH+S GGGASLELLEGK LPG
Sbjct:  304 ASGIPAGWMGLDCGPESVKKFVEVVGRAKQIVWNGPVGVFEWDKFSKGTKALMDKVVEVTGKGCITIIGGGDTATCCAKWNTEDKVSHVSTGGGASLELLEGKVLPG 410          
BLAST of CF832949 vs. ExPASy Swiss-Prot
Match: PGK_CORJK (Phosphoglycerate kinase OS=Corynebacterium jeikeium (strain K411) GN=pgk PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.146e-28
Identity = 59/117 (50.43%), Postives = 80/117 (68.38%), Query Frame = -1
Query:  254 KVVPATAIPDGWMGLDVGPDALKSFREGLDSTKTIIWNGPMGGFEFDKFAGGPEAIAKKLAELSGKGVPPIIGGGDSVAPVEKVGLGDK-MSHISPGGGASLELLEGKTLPGGLVFD 601
            + V   +IP+GWMGLD+GP+++K+F E L  +KT+ WNGPMG FEF  FA G   +A+ + + +  G   ++GGGDS A V  +GL ++  SHIS GGGASLE LEGK LPG  V +
Sbjct:  286 RTVDLNSIPEGWMGLDIGPESVKAFAEVLSKSKTVFWNGPMGVFEFPAFAEGTRGVAQAIIDATAAGAFSVVGGGDSAAAVRTLGLNEEGFSHISTGGGASLEFLEGKELPGVSVLE 402          
BLAST of CF832949 vs. ExPASy Swiss-Prot
Match: PGK_BACLD (Phosphoglycerate kinase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=pgk PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.146e-28
Identity = 61/117 (52.14%), Postives = 78/117 (66.67%), Query Frame = -1
Query:  251 KVVPATAIPDGWMGLDVGPDALKSFREGLDSTKTIIWNGPMGGFEFDKFAGGPEAIAKKLAELSGKGVPPIIGGGDSVAPVEKVGLGDKMSHISPGGGASLELLEGKTLPGGLVFDD 601
            K+VP + IP  W  LD+G +  K++ + + ++K ++WNGPMG FE D FA G  A+A+ LAE        +IGGGDS A VEK GL DKMSHIS GGGASLE +EGK LPG    +D
Sbjct:  279 KIVPVSEIPSDWEALDIGEETRKTYADVIKNSKLVVWNGPMGVFEIDAFAKGTRAVAEALAE--ANDTYSVIGGGDSAAAVEKFGLADKMSHISTGGGASLEFMEGKELPGVKALND 393          
BLAST of CF832949 vs. ExPASy Swiss-Prot
Match: PGK_PORGI (Phosphoglycerate kinase OS=Porphyromonas gingivalis GN=pgk PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.497e-28
Identity = 56/104 (53.85%), Postives = 77/104 (74.04%), Query Frame = -1
Query:  269 IPDGWMGLDVGPDALKSFREGLDSTKTIIWNGPMGGFEFDKFAGGPEAIAKKLAELSGKGVPPIIGGGDSVAPVEKVGLGDKMSHISPGGGASLELLEGKTLPG 580
            IPD WMG+D+GP +++ FR+ +  +KTI+WNGP G FEFD F+ G +A+ + + E +  G   ++GGGDSVA V K GL DK+S++S GGGA LE +EGKTLPG
Sbjct:  309 IPDDWMGMDIGPRSIEKFRKVILESKTILWNGPTGVFEFDNFSIGSKAVGEAIVEATANGAFSLVGGGDSVACVNKFGLADKVSYVSTGGGALLEAIEGKTLPG 412          
The following BLAST results are available for this feature:
BLAST of CF832949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_CHLT33.938e-2953.15Phosphoglycerate kinase OS=Chloroherpeton thalassi... [more]
PGK_CHLP83.938e-2951.28Phosphoglycerate kinase OS=Chlorobaculum parvum (s... [more]
PGK_BACST3.938e-2954.70Phosphoglycerate kinase OS=Bacillus stearothermoph... [more]
PGK_TREDE5.144e-2956.36Phosphoglycerate kinase OS=Treponema denticola GN=... [more]
PGK_THEM45.144e-2954.81Phosphoglycerate kinase OS=Thermosipho melanesiens... [more]
PGK_HERA26.718e-2952.99Phosphoglycerate kinase OS=Herpetosiphon aurantiac... [more]
PGK_CHICK6.718e-2956.07Phosphoglycerate kinase OS=Gallus gallus GN=PGK PE... [more]
PGK_CORJK1.146e-2850.43Phosphoglycerate kinase OS=Corynebacterium jeikeiu... [more]
PGK_BACLD1.146e-2852.14Phosphoglycerate kinase OS=Bacillus licheniformis ... [more]
PGK_PORGI1.497e-2853.85Phosphoglycerate kinase OS=Porphyromonas gingivali... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02L15_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02L15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832949 ID=CF832949; Name=CF832949; organism=Citrus sinensis; type=EST; length=601bp
TTTTTTTTTTTTTTTTTCCCCGAAACTTAAACCCTTACCATCACAATGTT
CCAAAAGGGGATCAAATCCAAAAAAATGCCTCCCCATTGATGCCTGGGAA
AAAAAATTTATTTTTACTCTTACAGCATCTACAAAACCAACTCTAATGAT
AAAGTTTAACTTTTATCCCCTCGGGGGTGACAACCACCCACACATACAAC
TCTGGAAATGGCCCATTTAAAAAAGGAAAGCCCAGGAACTGGGTTTAAGC
ATCATCAAAAACAAGCCCCCCAGGGAGTGTTTTGCCCTCAAGGAGCTCTA
AGCTGGCTCCCCCTCCAGGGGAAATATGGCTCATCTTGTCACCCAAACCA
ACCTTCTCTACGGGTGCAACTGAGTCACCCCCCCCAATGATGGGGGGCAC
TCCCTTCCCGCTGAGCTCCGCAAGCTTTTTGGCAATTGCCTCAGGGCCAC
CAGCAAATTTATCAAATTCAAACCCCCCCATAGGTCCATTCCAAATGATG
GTTTTAGTAGAATCCAAACCTTCCCTGAATGACTTGAGGGCATCAGGGCC
AACATCCAAGCCCATCCAACCATCTGGAATTGCCGTTGCTGGCACCACCT
T
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