CF832950

Overview
NameCF832950
Unique NameCF832950
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length606
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832950 vs. ExPASy Swiss-Prot
Match: PGK_MYCMS (Phosphoglycerate kinase OS=Mycoplasma mycoides subsp. mycoides SC GN=pgk PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.808e-29
Identity = 64/136 (47.06%), Postives = 87/136 (63.97%), Query Frame = 1
Query:   16 LLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 423
            +++P D   A +FA D +  +     IPD W GLD GP  I+ F + +   KTI+WNGP+GVFEF  F  GT+++ + +AE +  G  T+IGGGDS +A   +G  DK S ISTGGGASLE +EGK L G+ A+ D
Sbjct:  270 IVVPVDTACAKEFA-DVSPTIFEGN-IPDEWDGLDAGPKTIELFKQEIKKAKTIVWNGPVGVFEFKNFENGTKSVCQAIAEQTQNGAFTLIGGGDSASAAINMGFKDKFSWISTGGGASLEFMEGKELLGISAIQD 403          
BLAST of CF832950 vs. ExPASy Swiss-Prot
Match: PGK_COLP3 (Phosphoglycerate kinase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=pgk PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.808e-29
Identity = 64/133 (48.12%), Postives = 92/133 (69.17%), Query Frame = 1
Query:   22 LPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALD 420
            +P+DVV+A +F+A A + + P   +    M  D+GP+  K+ +E +    TI+WNGP+GVFEFD+F  GT+ IA+ +A+ S     +I GGGD++AAV+K  +ADK+S+ISTGGGA LE LEGK LP V  L+
Sbjct:  258 VPSDVVVATEFSASATATLKPVNEVTADEMIFDIGPETAKALTEIIANAGTIVWNGPVGVFEFDQFGEGTKVIAQAIADSS---AFSIAGGGDTLAAVDKYEIADKISYISTGGGAFLEFLEGKKLPAVEILE 387          
BLAST of CF832950 vs. ExPASy Swiss-Prot
Match: PGK_PSEPW (Phosphoglycerate kinase OS=Pseudomonas putida (strain W619) GN=pgk PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.361e-29
Identity = 64/137 (46.72%), Postives = 94/137 (68.61%), Query Frame = 1
Query:   13 SLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 423
            S+ LP DVV+A +FA  A + V     +    M LD+GP    +F+E L ++KTI+WNGP+GVFEFD+F  GT+ +AK +A+       +I GGGD++AA++K G++ ++S+ISTGGGA LE +EGK LP V  L++
Sbjct:  250 SVPLPVDVVVAKEFAESAEATVKAIADVAADDMILDIGPQTAANFAELLKSSKTILWNGPVGVFEFDQFGNGTKVLAKAIAD---SAAFSIAGGGDTLAAIDKYGVSAEISYISTGGGAFLEFVEGKVLPAVAILEE 383          
BLAST of CF832950 vs. ExPASy Swiss-Prot
Match: PGK_PSEPG (Phosphoglycerate kinase OS=Pseudomonas putida (strain GB-1) GN=pgk PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.361e-29
Identity = 64/137 (46.72%), Postives = 94/137 (68.61%), Query Frame = 1
Query:   13 SLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 423
            S+ LP DVV+A +FA  A + V     +    M LD+GP    +F+E L ++KTI+WNGP+GVFEFD+F  GT+ +AK +A+       +I GGGD++AA++K G++ ++S+ISTGGGA LE +EGK LP V  L++
Sbjct:  250 SVPLPVDVVVAKEFAETAEATVKAIADVAADDMILDIGPQTAANFAELLKSSKTILWNGPVGVFEFDQFGNGTKVLAKAIAD---SAAFSIAGGGDTLAAIDKYGVSKEISYISTGGGAFLEFVEGKVLPAVAILEE 383          
BLAST of CF832950 vs. ExPASy Swiss-Prot
Match: PGK_PSEP1 (Phosphoglycerate kinase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=pgk PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.361e-29
Identity = 64/137 (46.72%), Postives = 94/137 (68.61%), Query Frame = 1
Query:   13 SLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 423
            S+ LP DVV+A +FA  A + V     +    M LD+GP    +F+E L ++KTI+WNGP+GVFEFD+F  GT+ +AK +A+       +I GGGD++AA++K G++ ++S+ISTGGGA LE +EGK LP V  L++
Sbjct:  250 SVPLPVDVVVAKEFAETAEATVKAIADVAADDMILDIGPQTAANFAELLKSSKTILWNGPVGVFEFDQFGNGTKVLAKAIAD---SAAFSIAGGGDTLAAIDKYGVSKEISYISTGGGAFLEFVEGKVLPAVAILEE 383          
BLAST of CF832950 vs. ExPASy Swiss-Prot
Match: PGK_AERHH (Phosphoglycerate kinase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=pgk PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.361e-29
Identity = 62/131 (47.33%), Postives = 90/131 (68.70%), Query Frame = 1
Query:   28 TDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALD 420
            TDVV+  +F+    + +     + DG M  D+GPD+ K+ ++ +   KTI+WNGP+GVFEFD+FA GT+ IA+ +A        +I GGGD++AA++K G+ADK+S+ISTGGGA LE +EGK LP V  L+
Sbjct:  255 TDVVVGAEFSESTPATIKSVADVTDGDMIFDIGPDSAKALADIIMNAKTILWNGPVGVFEFDQFAEGTKVIAEAIA---ASPAFSIAGGGDTLAAIDKFGIADKVSYISTGGGAFLEFVEGKVLPAVAILE 382          
BLAST of CF832950 vs. ExPASy Swiss-Prot
Match: PGK_STRMU (Phosphoglycerate kinase OS=Streptococcus mutans GN=pgk PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.083e-29
Identity = 69/136 (50.74%), Postives = 86/136 (63.24%), Query Frame = 1
Query:   16 LLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 423
            L+LP D   A+ FA     K     A+  G++GLD+GP +I  F + L   KT++WNGPMGVFE   F AGT  +    A +   GV +IIGGGDS AA   +G ADK S ISTGGGAS+ELLEGK LPG+ AL +
Sbjct:  264 LILPVDSKEANAFADYTEVKDTEGAAVDPGFLGLDIGPKSIAKFDDELTGAKTVVWNGPMGVFENPDFQAGTIGVMD--AIVKQPGVKSIIGGGDSAAAAINLGRADKFSWISTGGGASMELLEGKVLPGLAALTE 397          
BLAST of CF832950 vs. ExPASy Swiss-Prot
Match: PGK_STRAW (Phosphoglycerate kinase OS=Streptomyces avermitilis GN=pgk PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.083e-29
Identity = 70/145 (48.28%), Postives = 91/145 (62.76%), Query Frame = 1
Query:    7 GASLLLPTDVVIADKFA-----ADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLAD-KMSHISTGGGASLELLEGKTLPGVLALDD 423
            G  L+LP DV+++ +F      A AN   V A AIP    GLD+GP+  K ++  L    T+ WNGPMGVFE   +A GT+A+A+ L +       T++GGGDS AAV  +G  +    HISTGGGASLE LEGKTLPG+ AL+D
Sbjct:  262 GVELVLPVDVLVSTEFPDLKTKAPANPTTVAADAIPADQEGLDIGPETRKLYASKLADAATVFWNGPMGVFEHPDYAEGTKAVAQALVD---SQAFTVVGGGDSAAAVRILGFDETAFGHISTGGGASLEYLEGKTLPGLAALED 403          
BLAST of CF832950 vs. ExPASy Swiss-Prot
Match: PGK_PSEF5 (Phosphoglycerate kinase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=pgk PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.027e-29
Identity = 64/136 (47.06%), Postives = 93/136 (68.38%), Query Frame = 1
Query:   13 SLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALD 420
            S+ LP DVV+A +FA  A + V     + D  M LD+GP     F+E L +++TI+WNGP+GVFEFD+F  GT+ +A+ +A+       +I GGGD++AA++K G+A ++S+ISTGGGA LE +EGK LP V  L+
Sbjct:  250 SVPLPVDVVVAKEFAESAAATVKLIADVADDDMILDIGPQTAAQFAELLKSSRTILWNGPVGVFEFDQFGNGTKVLAQAIAD---SAAFSIAGGGDTLAAIDKYGVAQQISYISTGGGAFLEFVEGKVLPAVEVLE 382          
BLAST of CF832950 vs. ExPASy Swiss-Prot
Match: PGK_HERAR (Phosphoglycerate kinase OS=Herminiimonas arsenicoxydans GN=pgk PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.027e-29
Identity = 66/139 (47.48%), Postives = 92/139 (66.19%), Query Frame = 1
Query:    4 KGASLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALD 420
            +GAS+ +P DVV A +F+  A + V     + D  M LD+GP      ++ +    TI+WNGP+GVFEFD+FA GT+ +A  +AE SG    ++ GGGD++AA+ K  +ADK+ +ISTGGGA LE LEGKTLP V  L+
Sbjct:  257 RGASVPIPVDVVCAKEFSPTAIATVKDVADVTDDDMILDIGPKTADILAKQISQAGTIVWNGPVGVFEFDQFANGTKTLAHAIAESSG---FSVAGGGDTLAAIAKYDIADKIGYISTGGGAFLEFLEGKTLPAVEILE 392          
The following BLAST results are available for this feature:
BLAST of CF832950 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_MYCMS1.808e-2947.06Phosphoglycerate kinase OS=Mycoplasma mycoides sub... [more]
PGK_COLP31.808e-2948.12Phosphoglycerate kinase OS=Colwellia psychrerythra... [more]
PGK_PSEPW2.361e-2946.72Phosphoglycerate kinase OS=Pseudomonas putida (str... [more]
PGK_PSEPG2.361e-2946.72Phosphoglycerate kinase OS=Pseudomonas putida (str... [more]
PGK_PSEP12.361e-2946.72Phosphoglycerate kinase OS=Pseudomonas putida (str... [more]
PGK_AERHH2.361e-2947.33Phosphoglycerate kinase OS=Aeromonas hydrophila su... [more]
PGK_STRMU3.083e-2950.74Phosphoglycerate kinase OS=Streptococcus mutans GN... [more]
PGK_STRAW3.083e-2948.28Phosphoglycerate kinase OS=Streptomyces avermitili... [more]
PGK_PSEF54.027e-2947.06Phosphoglycerate kinase OS=Pseudomonas fluorescens... [more]
PGK_HERAR4.027e-2947.48Phosphoglycerate kinase OS=Herminiimonas arsenicox... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02L15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02L15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832950 ID=CF832950; Name=CF832950; organism=Citrus sinensis; type=EST; length=606bp
TCTAAAGGGGCGTCTCTTCTGCTCCCTACTGATGTTGTTATTGCTGACAA
GTTTGCTGCTGATGCCAACAGCAAGGTGGTGCCAGCAACGGCAATTCCAG
ATGGTTGGATGGGCTTGGATGTTGGACCTGATGCCATCAAGTCATTCAGT
GAAGCTTTGGATACTACTAAAACCATCATCTGGAATGGACCTATGGGTGT
GTTTGAATTTGATAAATTTGCTGCTGGCACTGAGGCAATTGCCAAGAAGC
TTGCGGAGCTCAGCGGGAAGGGAGTGACCACAATCATTGGAGGAGGTGAC
TCAGTTGCAGCCGTAGAGAAGGTTGGTCTGGCTGACAAGATGAGCCATAT
CTCCACTGGAGGTGGAGCCAGCTTAGAGCTCCTTGAGGGCAAAACACTCC
CTGGTGTGCTTGCTCTTGATGATGCTTAAACCCAGTTCCTGGACTTTCCT
TTTTTAAATGTGCCATTTCCAGAGTTGTATGTGTGGCTGGTTGTCAGCCC
AGAGTGGATAAAAGTTAAACTTTATCATTAGAGTTGGTTTTGTAGATGCT
GTAAGAGTAAAAATAAATTCTTTCTCACAGGCATCAATGGTGATGCATTT
TTCTGG
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