CF832950

Overview
NameCF832950
Unique NameCF832950
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length606
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832950 vs. ExPASy Swiss-Prot
Match: PGK_RHOS4 (Phosphoglycerate kinase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=pgk PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 8.971e-29
Identity = 66/138 (47.83%), Postives = 90/138 (65.22%), Query Frame = 1
Query:    7 GASLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKG-VTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLAL 417
            G ++ LP DVV+A +F A A ++ V   A P   M LD GP  + + SE   + KT+IWNGP+G FE + F A T A A ++A+L+  G + ++ GGGD+VAA+ K G A+  S+IST GGA LE +EGK LPGV AL
Sbjct:  258 GCTIHLPLDVVVAREFKAGAANETVETAACPADAMILDAGPKTVAALSEVFASAKTLIWNGPLGAFEIEPFDAATNAAALQVAQLTKAGQLISVAGGGDTVAALNKAGAAEGFSYISTAGGAFLEWMEGKELPGVAAL 395          
BLAST of CF832950 vs. ExPASy Swiss-Prot
Match: PGKE_TRYBB (Phosphoglycerate kinase, cytosolic OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 8.971e-29
Identity = 66/137 (48.18%), Postives = 90/137 (65.69%), Query Frame = 1
Query:   16 LLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGK-GVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 423
            ++LP D V   +F A  +  +     IP+G M LD+GP  I+ + + +   K+ IWNGPMGVFE   ++ GT AIAK +   + + G+ +IIGGG+S  A E  G A ++SH+STGGGASLELLEGKTLPGV  LD+
Sbjct:  282 VILPIDHVCHTEFKAVDSPLITEDQNIPEGHMALDIGPKTIEKYVQTIGKCKSAIWNGPMGVFEMVPYSKGTFAIAKAMGRGTHEHGLMSIIGGGESAGAAELCGEAARISHVSTGGGASLELLEGKTLPGVTVLDE 418          
BLAST of CF832950 vs. ExPASy Swiss-Prot
Match: PGK_RHOFD (Phosphoglycerate kinase OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=pgk PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.172e-28
Identity = 66/134 (49.25%), Postives = 90/134 (67.16%), Query Frame = 1
Query:    1 SKGASLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLP 402
            ++GA++ +PTDVV A  FAADA + V  AT + D  + LD+GP    + +  L    TI+WNGP+GVFEF  F  GT+ IA  +AE S     +I GGGD++AA+ K G+  ++ +ISTGGGA LE+LEGKTLP
Sbjct:  256 ARGAAVPIPTDVVTAKTFAADAVATVKAATDVADDDLILDIGPQTAAALATQLKAAGTIVWNGPVGVFEFPAFENGTQTIAHAIAESS---AFSIAGGGDTLAAIAKYGIEKQIGYISTGGGAFLEVLEGKTLP 386          
BLAST of CF832950 vs. ExPASy Swiss-Prot
Match: PGK_PROAC (Phosphoglycerate kinase OS=Propionibacterium acnes GN=pgk PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.172e-28
Identity = 65/144 (45.14%), Postives = 91/144 (63.19%), Query Frame = 1
Query:    7 GASLLLPTDVVIADKFAADANS----KVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLA-DKMSHISTGGGASLELLEGKTLPGVLALDD 423
            G  +LLP DV +      +A +     VVPA  IP   M +D+GP+  K+++ A+   K++ WNGPMGVFE      GT+A+A+ L E+ G    +++GGGDS +AV  +G A D+  HISTGGGASLEL+EGK LPG+  L +
Sbjct:  260 GKQILLPVDVRVVSDIDFEARTVGQIDVVPADEIPSDKMAVDIGPETEKAYANAIKGAKSVFWNGPMGVFEIKGLELGTKAVAQALTEVDG---LSVVGGGDSASAVRTLGFADDQFGHISTGGGASLELMEGKELPGIAVLKE 400          
BLAST of CF832950 vs. ExPASy Swiss-Prot
Match: PGK_NITOC (Phosphoglycerate kinase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=pgk PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.530e-28
Identity = 66/143 (46.15%), Postives = 92/143 (64.34%), Query Frame = 1
Query:    7 GASLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA*TQ 435
            G  + LP DVV   +F+ +A + +     + D  M  D+GP+  K F+E L    TI+WNGP+GVFEFD+F  GT+A+A  +AE       +I GGGD++AAV K G+ D++S+ISTGGGA LE LEGK LP V  L++  +Q
Sbjct:  253 GGDIPLPVDVVCGQEFSENAEAVLKRIGKVTDEDMIFDIGPETSKHFAEILKGAGTIVWNGPVGVFEFDQFGEGTKALALAIAE---SPAFSIAGGGDTLAAVAKYGVGDQVSYISTGGGAFLEFLEGKQLPAVAILEERASQ 392          
BLAST of CF832950 vs. ExPASy Swiss-Prot
Match: PGK_ACIAC (Phosphoglycerate kinase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=pgk PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.530e-28
Identity = 65/134 (48.51%), Postives = 89/134 (66.42%), Query Frame = 1
Query:    1 SKGASLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLP 402
            ++GA + +PTDVV+A  F+ADA + V  AT + D  + LD+GP      +  L    TI+WNGP+GVFEF  F  GT+AIA+ +AE       +I GGGD++AA+ K G+   + +ISTGGGA LE+LEGKTLP
Sbjct:  256 ARGAEVPIPTDVVVAKTFSADAPATVKAATDVADDDLILDIGPQTAAKLAAQLKAAGTIVWNGPVGVFEFPAFENGTKAIAQAIAE---SPAFSIAGGGDTLAAIAKYGIEKDVGYISTGGGAFLEVLEGKTLP 386          
BLAST of CF832950 vs. ExPASy Swiss-Prot
Match: PGK_XANFL (Phosphoglycerate kinase OS=Xanthobacter flavus GN=pgk PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.998e-28
Identity = 62/138 (44.93%), Postives = 88/138 (63.77%), Query Frame = 1
Query:    7 GASLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKG-VTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLAL 417
            G  ++LP D V+A +F A+A  +V     + D  M LD GP+ +    + LD  KT++WNGP G FE   F A T A+A+ + +L+ KG + ++ GGGD+VAA+   G A++ S++ST GGA LE LEGK LPGV AL
Sbjct:  258 GCEIVLPVDAVVATEFKANAAHRVTSVDDVKDDEMMLDAGPETVGIVKQKLDGAKTVVWNGPFGAFEMTPFDAATVAVARYVGDLTHKGRLLSVAGGGDTVAALNHAGTAERFSYVSTAGGAFLEWLEGKALPGVEAL 395          
BLAST of CF832950 vs. ExPASy Swiss-Prot
Match: PGK_LACLA (Phosphoglycerate kinase OS=Lactococcus lactis subsp. lactis GN=pgk PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.610e-28
Identity = 67/136 (49.26%), Postives = 86/136 (63.24%), Query Frame = 1
Query:   16 LLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 423
            L+LP D  +A+ FA     K      IP G+MGLDV    I  ++  L+  KT++WNGP+GVFE   F AGT  + + + +  G  V +IIGGGDS AA   +G ADK S ISTGGGAS+ELLEGK LPG+ AL +
Sbjct:  264 LILPLDHKVANAFAGYTEVKETADQNIPAGFMGLDVASKTIADYNTQLEGAKTVVWNGPVGVFENTDFQAGTVGLMEAIVKQPG--VKSIIGGGDSAAAAINLGYADKFSWISTGGGASMELLEGKVLPGLAALTE 397          
BLAST of CF832950 vs. ExPASy Swiss-Prot
Match: PGKP_RALEH (Phosphoglycerate kinase, plasmid OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbKP PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.610e-28
Identity = 64/140 (45.71%), Postives = 91/140 (65.00%), Query Frame = 1
Query:    1 SKGASLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALD 420
            ++GAS+ +P DVV A +F+A A + V     + D  M LD+GP      ++ L    TI+WNGP+GVFEFD+F  GT  +A+ +AE       +I GGGD++AA+ K G+AD++ +ISTGGGA LE LEGK LP +  L+
Sbjct:  271 ARGASVPIPVDVVCAKEFSATAAAAVKDVRDVADDDMILDIGPKTAAMLADQLKAAGTIVWNGPVGVFEFDQFGNGTRVLAQAIAE---SKAFSIAGGGDTLAAIAKYGIADRVGYISTGGGAFLEFLEGKKLPALDVLE 407          
BLAST of CF832950 vs. ExPASy Swiss-Prot
Match: PGK_YERE8 (Phosphoglycerate kinase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=pgk PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.409e-28
Identity = 62/134 (46.27%), Postives = 91/134 (67.91%), Query Frame = 1
Query:   22 LPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 423
            +PTDV +A +F+  A + + PA  I D    LD+G ++ +  +E L   KTI+WNGP+GVFEF  F  GTE +A+ +AE       +I GGGD++AA++  G+AD++S+ISTGGGA LE +EGK LP V+ L++
Sbjct:  253 VPTDVRVATEFSETATATLKPANQIKDDEQILDLGDESAERLAEILKNAKTILWNGPVGVFEFPNFRKGTEIVARAIAE---SEAFSIAGGGDTLAAIDLFGIADQISYISTGGGAFLEFVEGKKLPAVVMLEE 383          
The following BLAST results are available for this feature:
BLAST of CF832950 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_RHOS48.971e-2947.83Phosphoglycerate kinase OS=Rhodobacter sphaeroides... [more]
PGKE_TRYBB8.971e-2948.18Phosphoglycerate kinase, cytosolic OS=Trypanosoma ... [more]
PGK_RHOFD1.172e-2849.25Phosphoglycerate kinase OS=Rhodoferax ferrireducen... [more]
PGK_PROAC1.172e-2845.14Phosphoglycerate kinase OS=Propionibacterium acnes... [more]
PGK_NITOC1.530e-2846.15Phosphoglycerate kinase OS=Nitrosococcus oceani (s... [more]
PGK_ACIAC1.530e-2848.51Phosphoglycerate kinase OS=Acidovorax avenae subsp... [more]
PGK_XANFL1.998e-2844.93Phosphoglycerate kinase OS=Xanthobacter flavus GN=... [more]
PGK_LACLA2.610e-2849.26Phosphoglycerate kinase OS=Lactococcus lactis subs... [more]
PGKP_RALEH2.610e-2845.71Phosphoglycerate kinase, plasmid OS=Ralstonia eutr... [more]
PGK_YERE83.409e-2846.27Phosphoglycerate kinase OS=Yersinia enterocolitica... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02L15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02L15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832950 ID=CF832950; Name=CF832950; organism=Citrus sinensis; type=EST; length=606bp
TCTAAAGGGGCGTCTCTTCTGCTCCCTACTGATGTTGTTATTGCTGACAA
GTTTGCTGCTGATGCCAACAGCAAGGTGGTGCCAGCAACGGCAATTCCAG
ATGGTTGGATGGGCTTGGATGTTGGACCTGATGCCATCAAGTCATTCAGT
GAAGCTTTGGATACTACTAAAACCATCATCTGGAATGGACCTATGGGTGT
GTTTGAATTTGATAAATTTGCTGCTGGCACTGAGGCAATTGCCAAGAAGC
TTGCGGAGCTCAGCGGGAAGGGAGTGACCACAATCATTGGAGGAGGTGAC
TCAGTTGCAGCCGTAGAGAAGGTTGGTCTGGCTGACAAGATGAGCCATAT
CTCCACTGGAGGTGGAGCCAGCTTAGAGCTCCTTGAGGGCAAAACACTCC
CTGGTGTGCTTGCTCTTGATGATGCTTAAACCCAGTTCCTGGACTTTCCT
TTTTTAAATGTGCCATTTCCAGAGTTGTATGTGTGGCTGGTTGTCAGCCC
AGAGTGGATAAAAGTTAAACTTTATCATTAGAGTTGGTTTTGTAGATGCT
GTAAGAGTAAAAATAAATTCTTTCTCACAGGCATCAATGGTGATGCATTT
TTCTGG
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