CF832950

Overview
NameCF832950
Unique NameCF832950
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length606
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832950 vs. ExPASy Swiss-Prot
Match: PGK_PSEA6 (Phosphoglycerate kinase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=pgk PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.409e-28
Identity = 62/138 (44.93%), Postives = 88/138 (63.77%), Query Frame = 1
Query:    7 GASLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALD 420
            G ++ +P DVV   +F+  A + +   + + D  M  D+GP      +E +    TI+WNGP+GVFEFD+F  GT+AIA  +A+       +I GGGD++AAV+K G+ DK+S+ISTGGGA LE LEGK LP V  L+
Sbjct:  253 GGNIPVPVDVVTGKEFSEQAQATLKAVSDVADDDMIFDIGPQTATELAELIKNAGTIVWNGPVGVFEFDQFGEGTKAIAMAIAQ---SNAFSIAGGGDTLAAVDKYGIEDKISYISTGGGAFLEFLEGKALPAVTMLE 387          
BLAST of CF832950 vs. ExPASy Swiss-Prot
Match: PGK_GRABC (Phosphoglycerate kinase OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=pgk PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.409e-28
Identity = 60/138 (43.48%), Postives = 89/138 (64.49%), Query Frame = 1
Query:    7 GASLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELS-GKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLAL 417
            G  +LLP D V A +F AD  ++ V    IPD  M LDVGP+ ++  +E L   KT++WNGP+G FE   F   T A+A+ +A L+   G+ ++ GGGD+VAA++  G+ ++++++S  GGA LE +EGK LPGV  L
Sbjct:  257 GCEILLPVDAVTATEFRADPPTRTVSINEIPDDAMMLDVGPETVRLLTERLSGVKTLVWNGPLGAFEISPFDKATVALAQSVAGLTETAGLVSVAGGGDTVAALKHAGVVERLTYVSAAGGAFLEWMEGKELPGVAVL 394          
BLAST of CF832950 vs. ExPASy Swiss-Prot
Match: PGK_SYNFM (Phosphoglycerate kinase OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=pgk PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.452e-28
Identity = 64/140 (45.71%), Postives = 88/140 (62.86%), Query Frame = 1
Query:    4 KGASLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 423
            KG  + LP D V+A    +  + + VP   +P   + LDVG  +I+ F   L   +TI+WNGP+G FE   F  GT A+A+ L  L      T+IGGGDS AAV++  + DK+S++STGGGA LE+LEG TLPGV AL++
Sbjct:  256 KGVKVYLPVDAVVAPSLESCGDVQQVPVEKVPKDRLILDVGSKSIEVFESVLKNCRTIVWNGPLGAFETPPFNKGTFALAEFLGSLDA---LTVIGGGDSAAAVKQANMEDKVSYVSTGGGAFLEMLEGITLPGVAALEE 392          
BLAST of CF832950 vs. ExPASy Swiss-Prot
Match: PGK_NITEU (Phosphoglycerate kinase OS=Nitrosomonas europaea GN=pgk PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.452e-28
Identity = 62/139 (44.60%), Postives = 90/139 (64.75%), Query Frame = 1
Query:    4 KGASLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALD 420
            + A++ +  DVV+  KFA D  + +  A A+ D  M  D+GP++ +   + +    T++WNGP+GVFEFD+F  GT AIAK +AE       T+ GGGD++AA++K  + DK+S+IST GGA LE LEGK LP V  L+
Sbjct:  253 RNATIPIAVDVVVGKKFAEDEAAVLKAANAVSDDDMIFDIGPESAQELVDIIMKAGTVVWNGPVGVFEFDQFGEGTRAIAKAIAETD---AFTLAGGGDTIAAIQKYDIYDKVSYISTAGGAFLEFLEGKKLPAVEILE 388          
BLAST of CF832950 vs. ExPASy Swiss-Prot
Match: PGK_ZYMMO (Phosphoglycerate kinase OS=Zymomonas mobilis GN=pgk PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.815e-28
Identity = 62/139 (44.60%), Postives = 91/139 (65.47%), Query Frame = 1
Query:    7 GASLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKG-VTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALD 420
            G  + LP+DVV+A +F A+   + +P + +    M LDVGP A+ + +E L  +KT++WNGP+G FE + F   T A+AK+ A L+  G + ++ GGGD+VAA+   G+A   S +ST GGA LE +EGK LPGV AL+
Sbjct:  258 GCKIHLPSDVVVAKEFKANPPIRTIPVSDVAADEMILDVGPKAVAALTEVLKASKTLVWNGPLGAFEIEPFDKATVALAKEAAALTKAGSLISVAGGGDTVAALNHAGVAKDFSFVSTAGGAFLEWMEGKELPGVKALE 396          
BLAST of CF832950 vs. ExPASy Swiss-Prot
Match: PGK_YERPY (Phosphoglycerate kinase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=pgk PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.815e-28
Identity = 62/134 (46.27%), Postives = 91/134 (67.91%), Query Frame = 1
Query:   22 LPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 423
            +PTDV +A +F+  A + + PA  I D    LD+G ++ +  +E L   KTI+WNGP+GVFEF  F  GTE +A+ +AE       +I GGGD++AA++  G+AD++S+ISTGGGA LE +EGK LP V+ L++
Sbjct:  253 VPTDVRVATEFSETAAATLKPANEIKDDEQILDLGDESAERLAEILKNAKTILWNGPVGVFEFPNFRKGTEIVARAIAE---SEAFSIAGGGDTLAAIDLFGIADQISYISTGGGAFLEFVEGKKLPAVVMLEE 383          
BLAST of CF832950 vs. ExPASy Swiss-Prot
Match: PGK_YERPS (Phosphoglycerate kinase OS=Yersinia pseudotuberculosis GN=pgk PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.815e-28
Identity = 62/134 (46.27%), Postives = 91/134 (67.91%), Query Frame = 1
Query:   22 LPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 423
            +PTDV +A +F+  A + + PA  I D    LD+G ++ +  +E L   KTI+WNGP+GVFEF  F  GTE +A+ +AE       +I GGGD++AA++  G+AD++S+ISTGGGA LE +EGK LP V+ L++
Sbjct:  253 VPTDVRVATEFSETAAATLKPANEIKDDEQILDLGDESAERLAEILKNAKTILWNGPVGVFEFPNFRKGTEIVARAIAE---SEAFSIAGGGDTLAAIDLFGIADQISYISTGGGAFLEFVEGKKLPAVVMLEE 383          
BLAST of CF832950 vs. ExPASy Swiss-Prot
Match: PGK_YERPP (Phosphoglycerate kinase OS=Yersinia pestis (strain Pestoides F) GN=pgk PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.815e-28
Identity = 62/134 (46.27%), Postives = 91/134 (67.91%), Query Frame = 1
Query:   22 LPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 423
            +PTDV +A +F+  A + + PA  I D    LD+G ++ +  +E L   KTI+WNGP+GVFEF  F  GTE +A+ +AE       +I GGGD++AA++  G+AD++S+ISTGGGA LE +EGK LP V+ L++
Sbjct:  253 VPTDVRVATEFSETAAATLKPANEIKDDEQILDLGDESAERLAEILKNAKTILWNGPVGVFEFPNFRKGTEIVARAIAE---SEAFSIAGGGDTLAAIDLFGIADQISYISTGGGAFLEFVEGKKLPAVVMLEE 383          
BLAST of CF832950 vs. ExPASy Swiss-Prot
Match: PGK_YERPN (Phosphoglycerate kinase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=pgk PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.815e-28
Identity = 62/134 (46.27%), Postives = 91/134 (67.91%), Query Frame = 1
Query:   22 LPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 423
            +PTDV +A +F+  A + + PA  I D    LD+G ++ +  +E L   KTI+WNGP+GVFEF  F  GTE +A+ +AE       +I GGGD++AA++  G+AD++S+ISTGGGA LE +EGK LP V+ L++
Sbjct:  253 VPTDVRVATEFSETAAATLKPANEIKDDEQILDLGDESAERLAEILKNAKTILWNGPVGVFEFPNFRKGTEIVARAIAE---SEAFSIAGGGDTLAAIDLFGIADQISYISTGGGAFLEFVEGKKLPAVVMLEE 383          
BLAST of CF832950 vs. ExPASy Swiss-Prot
Match: PGK_YERPG (Phosphoglycerate kinase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=pgk PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.815e-28
Identity = 62/134 (46.27%), Postives = 91/134 (67.91%), Query Frame = 1
Query:   22 LPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 423
            +PTDV +A +F+  A + + PA  I D    LD+G ++ +  +E L   KTI+WNGP+GVFEF  F  GTE +A+ +AE       +I GGGD++AA++  G+AD++S+ISTGGGA LE +EGK LP V+ L++
Sbjct:  253 VPTDVRVATEFSETAAATLKPANEIKDDEQILDLGDESAERLAEILKNAKTILWNGPVGVFEFPNFRKGTEIVARAIAE---SEAFSIAGGGDTLAAIDLFGIADQISYISTGGGAFLEFVEGKKLPAVVMLEE 383          
The following BLAST results are available for this feature:
BLAST of CF832950 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_PSEA63.409e-2844.93Phosphoglycerate kinase OS=Pseudoalteromonas atlan... [more]
PGK_GRABC3.409e-2843.48Phosphoglycerate kinase OS=Granulibacter bethesden... [more]
PGK_SYNFM4.452e-2845.71Phosphoglycerate kinase OS=Syntrophobacter fumarox... [more]
PGK_NITEU4.452e-2844.60Phosphoglycerate kinase OS=Nitrosomonas europaea G... [more]
PGK_ZYMMO5.815e-2844.60Phosphoglycerate kinase OS=Zymomonas mobilis GN=pg... [more]
PGK_YERPY5.815e-2846.27Phosphoglycerate kinase OS=Yersinia pseudotubercul... [more]
PGK_YERPS5.815e-2846.27Phosphoglycerate kinase OS=Yersinia pseudotubercul... [more]
PGK_YERPP5.815e-2846.27Phosphoglycerate kinase OS=Yersinia pestis (strain... [more]
PGK_YERPN5.815e-2846.27Phosphoglycerate kinase OS=Yersinia pestis bv. Ant... [more]
PGK_YERPG5.815e-2846.27Phosphoglycerate kinase OS=Yersinia pestis bv. Ant... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02L15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02L15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832950 ID=CF832950; Name=CF832950; organism=Citrus sinensis; type=EST; length=606bp
TCTAAAGGGGCGTCTCTTCTGCTCCCTACTGATGTTGTTATTGCTGACAA
GTTTGCTGCTGATGCCAACAGCAAGGTGGTGCCAGCAACGGCAATTCCAG
ATGGTTGGATGGGCTTGGATGTTGGACCTGATGCCATCAAGTCATTCAGT
GAAGCTTTGGATACTACTAAAACCATCATCTGGAATGGACCTATGGGTGT
GTTTGAATTTGATAAATTTGCTGCTGGCACTGAGGCAATTGCCAAGAAGC
TTGCGGAGCTCAGCGGGAAGGGAGTGACCACAATCATTGGAGGAGGTGAC
TCAGTTGCAGCCGTAGAGAAGGTTGGTCTGGCTGACAAGATGAGCCATAT
CTCCACTGGAGGTGGAGCCAGCTTAGAGCTCCTTGAGGGCAAAACACTCC
CTGGTGTGCTTGCTCTTGATGATGCTTAAACCCAGTTCCTGGACTTTCCT
TTTTTAAATGTGCCATTTCCAGAGTTGTATGTGTGGCTGGTTGTCAGCCC
AGAGTGGATAAAAGTTAAACTTTATCATTAGAGTTGGTTTTGTAGATGCT
GTAAGAGTAAAAATAAATTCTTTCTCACAGGCATCAATGGTGATGCATTT
TTCTGG
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