CF832950

Overview
NameCF832950
Unique NameCF832950
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length606
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2633 contig Csv1_Contig2633:143..748. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832950 vs. ExPASy Swiss-Prot
Match: PGK_YERPE (Phosphoglycerate kinase OS=Yersinia pestis GN=pgk PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.815e-28
Identity = 62/134 (46.27%), Postives = 91/134 (67.91%), Query Frame = 1
Query:   22 LPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 423
            +PTDV +A +F+  A + + PA  I D    LD+G ++ +  +E L   KTI+WNGP+GVFEF  F  GTE +A+ +AE       +I GGGD++AA++  G+AD++S+ISTGGGA LE +EGK LP V+ L++
Sbjct:  253 VPTDVRVATEFSETAAATLKPANEIKDDEQILDLGDESAERLAEILKNAKTILWNGPVGVFEFPNFRKGTEIVARAIAE---SEAFSIAGGGDTLAAIDLFGIADQISYISTGGGAFLEFVEGKKLPAVVMLEE 383          
BLAST of CF832950 vs. ExPASy Swiss-Prot
Match: PGK_YERPB (Phosphoglycerate kinase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=pgk PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.815e-28
Identity = 62/134 (46.27%), Postives = 91/134 (67.91%), Query Frame = 1
Query:   22 LPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 423
            +PTDV +A +F+  A + + PA  I D    LD+G ++ +  +E L   KTI+WNGP+GVFEF  F  GTE +A+ +AE       +I GGGD++AA++  G+AD++S+ISTGGGA LE +EGK LP V+ L++
Sbjct:  253 VPTDVRVATEFSETAAATLKPANEIKDDEQILDLGDESAERLAEILKNAKTILWNGPVGVFEFPNFRKGTEIVARAIAE---SEAFSIAGGGDTLAAIDLFGIADQISYISTGGGAFLEFVEGKKLPAVVMLEE 383          
BLAST of CF832950 vs. ExPASy Swiss-Prot
Match: PGK_YERPA (Phosphoglycerate kinase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=pgk PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.815e-28
Identity = 62/134 (46.27%), Postives = 91/134 (67.91%), Query Frame = 1
Query:   22 LPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 423
            +PTDV +A +F+  A + + PA  I D    LD+G ++ +  +E L   KTI+WNGP+GVFEF  F  GTE +A+ +AE       +I GGGD++AA++  G+AD++S+ISTGGGA LE +EGK LP V+ L++
Sbjct:  253 VPTDVRVATEFSETAAATLKPANEIKDDEQILDLGDESAERLAEILKNAKTILWNGPVGVFEFPNFRKGTEIVARAIAE---SEAFSIAGGGDTLAAIDLFGIADQISYISTGGGAFLEFVEGKKLPAVVMLEE 383          
BLAST of CF832950 vs. ExPASy Swiss-Prot
Match: PGK_YERP3 (Phosphoglycerate kinase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=pgk PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.815e-28
Identity = 62/134 (46.27%), Postives = 91/134 (67.91%), Query Frame = 1
Query:   22 LPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 423
            +PTDV +A +F+  A + + PA  I D    LD+G ++ +  +E L   KTI+WNGP+GVFEF  F  GTE +A+ +AE       +I GGGD++AA++  G+AD++S+ISTGGGA LE +EGK LP V+ L++
Sbjct:  253 VPTDVRVATEFSETAAATLKPANEIKDDEQILDLGDESAERLAEILKNAKTILWNGPVGVFEFPNFRKGTEIVARAIAE---SEAFSIAGGGDTLAAIDLFGIADQISYISTGGGAFLEFVEGKKLPAVVMLEE 383          
BLAST of CF832950 vs. ExPASy Swiss-Prot
Match: PGK_NITEC (Phosphoglycerate kinase OS=Nitrosomonas eutropha (strain C91) GN=pgk PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.815e-28
Identity = 63/139 (45.32%), Postives = 89/139 (64.03%), Query Frame = 1
Query:    4 KGASLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALD 420
            + A++ +  DVV+  KFAAD  + +  A A+ D  M  D+GP + +     +    T++WNGP+GVFEFD+F  GT AIAK +AE       T+ GGGD++AA++K  + DK+S+IST GGA LE LEGK LP V  L+
Sbjct:  253 RNATIPIAIDVVVGKKFAADEPAVLKEANAVSDDDMIFDIGPKSTQELVNIIMKAGTVVWNGPVGVFEFDQFGEGTHAIAKAIAETD---AFTLAGGGDTIAAIQKYDIYDKVSYISTAGGAFLEFLEGKKLPAVEILE 388          
BLAST of CF832950 vs. ExPASy Swiss-Prot
Match: PGK_JANSC (Phosphoglycerate kinase OS=Jannaschia sp. (strain CCS1) GN=pgk PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.815e-28
Identity = 64/139 (46.04%), Postives = 90/139 (64.75%), Query Frame = 1
Query:   13 SLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKG-VTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 426
            +L+LP D+V+A +F A A + V    A P   M LD GP  +++ +   +T KT+IWNGP+G FE   F A T   A+  AE +  G + ++ GGGD+VAA+   G+AD+ ++IST GGA LE +EGKTLPGV AL+ A
Sbjct:  255 TLILPGDIVVAAEFKAGAANAVYDVDACPADQMILDAGPKTVETIAATFNTAKTVIWNGPLGAFEIAPFDAATVTAARAAAEETQAGKLISVAGGGDTVAALNHAGVADQFTYISTAGGAFLEWMEGKTLPGVAALEAA 393          
BLAST of CF832950 vs. ExPASy Swiss-Prot
Match: PGK_AZOC5 (Phosphoglycerate kinase OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=pgk PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.815e-28
Identity = 65/140 (46.43%), Postives = 85/140 (60.71%), Query Frame = 1
Query:    1 SKGASLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKG-VTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLAL 417
            S G  ++LP D V+   FAA A+ +VVP   + +  M LD GP  +    E L   KT++WNGP G FE   F A T A+AK +AE +  G + ++ GGGD+VAA+   G A   S++ST GGA LE LEGK LPGV AL
Sbjct:  255 SHGCEIVLPVDAVVTKTFAAHADHRVVPVDQVAEDEMILDAGPATVALVREKLKGAKTVVWNGPFGAFELPPFDAATVAVAKAVAEATKAGALLSVAGGGDTVAALNHAGAAGDFSYVSTAGGAFLEWLEGKQLPGVEAL 394          
BLAST of CF832950 vs. ExPASy Swiss-Prot
Match: PGK_AGRT5 (Phosphoglycerate kinase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=pgk PE=3 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 5.815e-28
Identity = 63/143 (44.06%), Postives = 92/143 (64.34%), Query Frame = 1
Query:    1 SKGASLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKG-VTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 426
            + G +++LP D V+A +F A A +++V   AIP   M LDVGP +++S    +   +T++WNGP+G FE + F A T A AK  AE +  G + ++ GGGD+VAA+   G++D  ++IST GGA LE +EGK LPGV  L  A
Sbjct:  257 TSGCAIVLPEDGVVAREFTAGAANEIVDINAIPADAMVLDVGPKSVESIKAWISRAETLVWNGPLGAFEIEPFDAATVAAAKHAAECTKAGKLVSVAGGGDTVAALNHAGVSDDFTYISTAGGAFLEWMEGKELPGVAILTTA 399          
BLAST of CF832950 vs. ExPASy Swiss-Prot
Match: PGKD_TRYBB (Phosphoglycerate kinase A OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.815e-28
Identity = 67/137 (48.91%), Postives = 88/137 (64.23%), Query Frame = 1
Query:   16 LLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGK-GVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 423
            ++LP D V   +F A  +  +     IP+G M LD+GP  I+ + + +   K+ IWNGPMGVFE   ++ GT AIAK +   + K G+ +IIGGG+S  A E  G    +SH+STGGGASLELLEGKTLPGV  LDD
Sbjct:  371 IILPIDHVCHTEFKAVDSPLITEDQNIPEGHMALDIGPKTIEKYVQTIGKCKSAIWNGPMGVFEMVPYSKGTFAIAKAMGRGTQKRGLMSIIGGGESAGAAELCGKL-SISHVSTGGGASLELLEGKTLPGVAVLDD 506          
BLAST of CF832950 vs. ExPASy Swiss-Prot
Match: PGKA_TRYBB (Phosphoglycerate kinase A OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.815e-28
Identity = 67/137 (48.91%), Postives = 89/137 (64.96%), Query Frame = 1
Query:   16 LLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGK-GVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 423
            ++LP D V   +F A  +  +     IP+G M LD+GP  I+ + + +   K+ IWNGPMGVFE   ++ GT AIAK +   + K G+ +IIGGG+S  A E    A ++SH+STGGGASLELLEGKTLPGV  LDD
Sbjct:  371 VILPIDHVCHTEFKAVDSPLITEDQNIPEGHMALDIGPKTIEKYVQTIGKCKSAIWNGPMGVFEMVPYSKGTFAIAKAMGRGTQKRGLMSIIGGGESAGAAE----AARISHVSTGGGASLELLEGKTLPGVAVLDD 503          
The following BLAST results are available for this feature:
BLAST of CF832950 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_YERPE5.815e-2846.27Phosphoglycerate kinase OS=Yersinia pestis GN=pgk ... [more]
PGK_YERPB5.815e-2846.27Phosphoglycerate kinase OS=Yersinia pseudotubercul... [more]
PGK_YERPA5.815e-2846.27Phosphoglycerate kinase OS=Yersinia pestis bv. Ant... [more]
PGK_YERP35.815e-2846.27Phosphoglycerate kinase OS=Yersinia pseudotubercul... [more]
PGK_NITEC5.815e-2845.32Phosphoglycerate kinase OS=Nitrosomonas eutropha (... [more]
PGK_JANSC5.815e-2846.04Phosphoglycerate kinase OS=Jannaschia sp. (strain ... [more]
PGK_AZOC55.815e-2846.43Phosphoglycerate kinase OS=Azorhizobium caulinodan... [more]
PGK_AGRT55.815e-2844.06Phosphoglycerate kinase OS=Agrobacterium tumefacie... [more]
PGKD_TRYBB5.815e-2848.91Phosphoglycerate kinase A OS=Trypanosoma brucei br... [more]
PGKA_TRYBB5.815e-2848.91Phosphoglycerate kinase A OS=Trypanosoma brucei br... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02L15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02L15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832950 ID=CF832950; Name=CF832950; organism=Citrus sinensis; type=EST; length=606bp
TCTAAAGGGGCGTCTCTTCTGCTCCCTACTGATGTTGTTATTGCTGACAA
GTTTGCTGCTGATGCCAACAGCAAGGTGGTGCCAGCAACGGCAATTCCAG
ATGGTTGGATGGGCTTGGATGTTGGACCTGATGCCATCAAGTCATTCAGT
GAAGCTTTGGATACTACTAAAACCATCATCTGGAATGGACCTATGGGTGT
GTTTGAATTTGATAAATTTGCTGCTGGCACTGAGGCAATTGCCAAGAAGC
TTGCGGAGCTCAGCGGGAAGGGAGTGACCACAATCATTGGAGGAGGTGAC
TCAGTTGCAGCCGTAGAGAAGGTTGGTCTGGCTGACAAGATGAGCCATAT
CTCCACTGGAGGTGGAGCCAGCTTAGAGCTCCTTGAGGGCAAAACACTCC
CTGGTGTGCTTGCTCTTGATGATGCTTAAACCCAGTTCCTGGACTTTCCT
TTTTTAAATGTGCCATTTCCAGAGTTGTATGTGTGGCTGGTTGTCAGCCC
AGAGTGGATAAAAGTTAAACTTTATCATTAGAGTTGGTTTTGTAGATGCT
GTAAGAGTAAAAATAAATTCTTTCTCACAGGCATCAATGGTGATGCATTT
TTCTGG
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