CF832950

Overview
NameCF832950
Unique NameCF832950
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length606
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2633 contig Csv1_Contig2633:143..748. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832950 vs. ExPASy Swiss-Prot
Match: PGK_BREBN (Phosphoglycerate kinase OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=pgk PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 1.989e-44
Identity = 85/140 (60.71%), Postives = 106/140 (75.71%), Query Frame = 1
Query:    4 KGASLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 423
            +G  LL+P DVV+AD+FAADA  +VV   AIP+GWM LD+GP  ++ +   +  +KT++WNGPMGVFE D FA GT  +AK +A  SG   TTIIGGGDSVAAVEK G+A++M+HISTGGGASLE +EGK LPGV  L D
Sbjct:  256 RGVQLLMPVDVVVADRFAADAEKQVVAIDAIPEGWMALDIGPKTVEQYHSVIVDSKTVVWNGPMGVFEMDAFAGGTIGVAKAMAACSG---TTIIGGGDSVAAVEKAGVAEQMTHISTGGGASLEFMEGKELPGVAVLAD 392          
BLAST of CF832950 vs. ExPASy Swiss-Prot
Match: PGK_DEIDV (Phosphoglycerate kinase OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=pgk PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.598e-44
Identity = 85/137 (62.04%), Postives = 107/137 (78.10%), Query Frame = 1
Query:    7 GASLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLAL 417
            G  L+LPTD V AD+FAADA+++VVPA  IP+GWMGLD+GPD  ++++EAL   KT+ WNGPMGVFEF  FAAGT A+A  +  L  +   T++GGGDSV+A+ K G AD++ HISTGGGASLELLEGK LPGV A+
Sbjct:  253 GDKLMLPTDAVAADRFAADADTRVVPADQIPEGWMGLDIGPDTQQAYTEALRGAKTVFWNGPMGVFEFPAFAAGTNAVAAAVGSLKNQAY-TVVGGGDSVSAINKSGKADQIDHISTGGGASLELLEGKALPGVEAM 388          
BLAST of CF832950 vs. ExPASy Swiss-Prot
Match: PGK_RHOSR (Phosphoglycerate kinase OS=Rhodococcus sp. (strain RHA1) GN=pgk PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.684e-43
Identity = 81/134 (60.45%), Postives = 104/134 (77.61%), Query Frame = 1
Query:   22 LPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGL-ADKMSHISTGGGASLELLEGKTLPGVLALD 420
            +P DVVIAD F+ADA SK+V    IPDGWMGLD+GP +++ F+  L + KT+ WNGPMGVFEF+KFAAGT+ +A+ + E +GKG  +++GGGDS AAV ++GL  D  SHISTGGGASLE LEGK LPG+  L+
Sbjct:  269 IPQDVVIADSFSADAESKIVSVLEIPDGWMGLDIGPQSVRRFAAILTSAKTVFWNGPMGVFEFEKFAAGTKGVAEAIIEATGKGAYSVVGGGDSAAAVRQLGLPEDGFSHISTGGGASLEYLEGKELPGIAVLE 402          
BLAST of CF832950 vs. ExPASy Swiss-Prot
Match: PGK_RHOOB (Phosphoglycerate kinase OS=Rhodococcus opacus (strain B4) GN=pgk PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.684e-43
Identity = 81/134 (60.45%), Postives = 104/134 (77.61%), Query Frame = 1
Query:   22 LPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGL-ADKMSHISTGGGASLELLEGKTLPGVLALD 420
            +P DVVIAD F+ADA SK+V    IPDGWMGLD+GP +++ F+  L + KT+ WNGPMGVFEF+KFAAGT+ +A+ + E +GKG  +++GGGDS AAV ++GL  D  SHISTGGGASLE LEGK LPG+  L+
Sbjct:  269 IPQDVVIADSFSADAESKIVSVLEIPDGWMGLDIGPQSVRRFAAILTSAKTVFWNGPMGVFEFEKFAAGTKGVAEAIIEATGKGAYSVVGGGDSAAAVRQLGLPEDGFSHISTGGGASLEYLEGKELPGIAVLE 402          
BLAST of CF832950 vs. ExPASy Swiss-Prot
Match: PGK_NOCFA (Phosphoglycerate kinase OS=Nocardia farcinica GN=pgk PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.684e-43
Identity = 83/135 (61.48%), Postives = 101/135 (74.81%), Query Frame = 1
Query:   22 LPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGL-ADKMSHISTGGGASLELLEGKTLPGVLALDD 423
            LP DVV+AD F+ADA SK VPA  IPDGWMGLD+G +++  F+  L   KT+ WNGPMGVFEF+KFAAGT  +A+ +   +GKG  T++GGGDS AAV  +GL  D  SHISTGGGASLE LEGK LPG+  L+D
Sbjct:  270 LPRDVVVADSFSADAESKCVPANEIPDGWMGLDIGAESVDRFAALLTEAKTVFWNGPMGVFEFEKFAAGTRGVAEAIVAATGKGAFTVVGGGDSAAAVRALGLPEDGFSHISTGGGASLEYLEGKELPGISVLED 404          
BLAST of CF832950 vs. ExPASy Swiss-Prot
Match: PGK_MOOTA (Phosphoglycerate kinase OS=Moorella thermoacetica (strain ATCC 39073) GN=pgk PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.684e-43
Identity = 82/140 (58.57%), Postives = 109/140 (77.86%), Query Frame = 1
Query:    4 KGASLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 423
            KG  +LLP D+V+A +F ADA  +VV   A+PDGWM LD+GP+  ++++ AL+  +T++WNGPMGVFE + FA GTEA+A+ +A + G    TI+GGGDSVAAVEK+G+A K+ HISTGGGASLE LEGK LPGV+AL +
Sbjct:  256 KGVKMLLPRDLVVAQEFKADAPHQVVAVNAVPDGWMALDIGPETARAYAGALEGARTVVWNGPMGVFEMEAFAHGTEAVARAVAAVDG---MTIVGGGDSVAAVEKMGVAGKIGHISTGGGASLEFLEGKALPGVVALTE 392          
BLAST of CF832950 vs. ExPASy Swiss-Prot
Match: PGK_CHLT3 (Phosphoglycerate kinase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=pgk PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 3.752e-43
Identity = 81/142 (57.04%), Postives = 103/142 (72.54%), Query Frame = 1
Query:    1 SKGASLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 426
            + G   LLPTDVV+ADKF  DAN+K+    +I D WMGLD+GP+    F E +   KT+IWNGPMGVFE +KFA GT A+A+ LA+ + +G  T+IGGGDS AA+   GL D ++H+STGGGASLE LEGK LPG+ AL +A
Sbjct:  256 TSGVKFLLPTDVVLADKFDQDANTKIATIDSIEDDWMGLDIGPETANCFREEVVNAKTVIWNGPMGVFEMEKFAKGTMAVAQALADATKQGAITVIGGGDSAAAIAVAGLEDSVTHVSTGGGASLEFLEGKELPGIAALSNA 397          
BLAST of CF832950 vs. ExPASy Swiss-Prot
Match: PGK_SYMTH (Phosphoglycerate kinase OS=Symbiobacterium thermophilum GN=pgk PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 6.399e-43
Identity = 81/137 (59.12%), Postives = 104/137 (75.91%), Query Frame = 1
Query:    7 GASLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLAL 417
            G  +LLPTD+V+A +F ADA  KVVP  AIP+GWM LD+GP+  ++F++ +    T++WNGPMGVFE + FA GT A+A+ +A+  G    TI+GGGDSVAAVE  GLAD+M+H+STGGGASLE LEGK LPGV  L
Sbjct:  255 GDKILLPTDLVVASEFKADAEQKVVPVDAIPEGWMALDIGPETARAFADVIRGAHTVVWNGPMGVFEMEPFARGTFAVAQAMADCEG---VTIVGGGDSVAAVEAAGLADRMTHVSTGGGASLEFLEGKELPGVACL 388          
BLAST of CF832950 vs. ExPASy Swiss-Prot
Match: PGK_RHOE4 (Phosphoglycerate kinase OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=pgk PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.426e-42
Identity = 79/134 (58.96%), Postives = 102/134 (76.12%), Query Frame = 1
Query:   22 LPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADK-MSHISTGGGASLELLEGKTLPGVLALD 420
            +P DVV+AD F+ADA SK+VP   IPDGWMGLD+GP+++K F+  L   KT+ WNGPMGVFEF KF AGT  +A+ + E + KG  +++GGGDS AAV ++G+ D+  SHISTGGGASLE LEGK LPG+  L+
Sbjct:  269 IPQDVVVADSFSADAESKIVPFDKIPDGWMGLDIGPESVKRFAAILTGAKTVFWNGPMGVFEFPKFEAGTRGVAEAIVEATEKGAFSVVGGGDSAAAVRQLGIPDEGFSHISTGGGASLEYLEGKELPGIAVLE 402          
BLAST of CF832950 vs. ExPASy Swiss-Prot
Match: PGK_BACLD (Phosphoglycerate kinase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=pgk PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.426e-42
Identity = 81/140 (57.86%), Postives = 105/140 (75.00%), Query Frame = 1
Query:    4 KGASLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 423
            KG +  +PTDV++AD F+ DAN+K+VP + IP  W  LD+G +  K++++ +  +K ++WNGPMGVFE D FA GT A+A+ LAE       ++IGGGDS AAVEK GLADKMSHISTGGGASLE +EGK LPGV AL+D
Sbjct:  256 KGVNFYMPTDVLVADDFSNDANTKIVPVSEIPSDWEALDIGEETRKTYADVIKNSKLVVWNGPMGVFEIDAFAKGTRAVAEALAE--ANDTYSVIGGGDSAAAVEKFGLADKMSHISTGGGASLEFMEGKELPGVKALND 393          
The following BLAST results are available for this feature:
BLAST of CF832950 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_BREBN1.989e-4460.71Phosphoglycerate kinase OS=Brevibacillus brevis (s... [more]
PGK_DEIDV2.598e-4462.04Phosphoglycerate kinase OS=Deinococcus deserti (st... [more]
PGK_RHOSR1.684e-4360.45Phosphoglycerate kinase OS=Rhodococcus sp. (strain... [more]
PGK_RHOOB1.684e-4360.45Phosphoglycerate kinase OS=Rhodococcus opacus (str... [more]
PGK_NOCFA1.684e-4361.48Phosphoglycerate kinase OS=Nocardia farcinica GN=p... [more]
PGK_MOOTA1.684e-4358.57Phosphoglycerate kinase OS=Moorella thermoacetica ... [more]
PGK_CHLT33.752e-4357.04Phosphoglycerate kinase OS=Chloroherpeton thalassi... [more]
PGK_SYMTH6.399e-4359.12Phosphoglycerate kinase OS=Symbiobacterium thermop... [more]
PGK_RHOE41.426e-4258.96Phosphoglycerate kinase OS=Rhodococcus erythropoli... [more]
PGK_BACLD1.426e-4257.86Phosphoglycerate kinase OS=Bacillus licheniformis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02L15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02L15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832950 ID=CF832950; Name=CF832950; organism=Citrus sinensis; type=EST; length=606bp
TCTAAAGGGGCGTCTCTTCTGCTCCCTACTGATGTTGTTATTGCTGACAA
GTTTGCTGCTGATGCCAACAGCAAGGTGGTGCCAGCAACGGCAATTCCAG
ATGGTTGGATGGGCTTGGATGTTGGACCTGATGCCATCAAGTCATTCAGT
GAAGCTTTGGATACTACTAAAACCATCATCTGGAATGGACCTATGGGTGT
GTTTGAATTTGATAAATTTGCTGCTGGCACTGAGGCAATTGCCAAGAAGC
TTGCGGAGCTCAGCGGGAAGGGAGTGACCACAATCATTGGAGGAGGTGAC
TCAGTTGCAGCCGTAGAGAAGGTTGGTCTGGCTGACAAGATGAGCCATAT
CTCCACTGGAGGTGGAGCCAGCTTAGAGCTCCTTGAGGGCAAAACACTCC
CTGGTGTGCTTGCTCTTGATGATGCTTAAACCCAGTTCCTGGACTTTCCT
TTTTTAAATGTGCCATTTCCAGAGTTGTATGTGTGGCTGGTTGTCAGCCC
AGAGTGGATAAAAGTTAAACTTTATCATTAGAGTTGGTTTTGTAGATGCT
GTAAGAGTAAAAATAAATTCTTTCTCACAGGCATCAATGGTGATGCATTT
TTCTGG
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