CF832951

Overview
NameCF832951
Unique NameCF832951
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length672
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832951 vs. ExPASy Swiss-Prot
Match: PGK_HELHP (Phosphoglycerate kinase OS=Helicobacter hepaticus GN=pgk PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.536e-17
Identity = 51/129 (39.53%), Postives = 67/129 (51.94%), Query Frame = -3
Query:  272 LLLPTEVVIADKFVVDANSKVVPATAIPNGWMGLDVGPDPIKSFREALDTTKTIIWNGPMGGFEFDKFAAGPEAIXXXXXXXXXXXXXXXXXXGDSVAPVEKVGLGDKMSHISPGGGASLELLGGKTLP 658
            + LP +VV  D      + K+ PA  IP G+M +D+GP   K F E +  ++TIIWNGP+G +E   F+ G                      GD+   ++K G  D MS IS GGGASLELL GK LP
Sbjct:  269 IYLPVDVVSTDDIKEHRHIKITPAQDIPEGFMAVDMGPATSKLFSEVVRDSQTIIWNGPLGIYEIQAFSRG---TFNLAHAVSDTYAFSLIGGGDTADAIDKAGERDNMSFISTGGGASLELLEGKILP 394          
BLAST of CF832951 vs. ExPASy Swiss-Prot
Match: PGK_PSEPK (Phosphoglycerate kinase OS=Pseudomonas putida (strain KT2440) GN=pgk PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.230e-17
Identity = 48/127 (37.80%), Postives = 71/127 (55.91%), Query Frame = -3
Query:  272 LPTEVVIADKFVVDANSKVVPATAIPNGWMGLDVGPDPIKSFREALDTTKTIIWNGPMGGFEFDKFAAGPEAIXXXXXXXXXXXXXXXXXXGDSVAPVEKVGLGDKMSHISPGGGASLELLGGKTLP 652
            LP +VV+A +F   A + V     +    M LD+GP    +F E L ++KTI+WNGP+G FEFD+F  G + +                  GD++A ++K G+  ++S+IS GGGA LE + GK LP
Sbjct:  253 LPVDVVVAKEFAESAEATVKAIADVAADDMILDIGPQTAANFAELLKSSKTILWNGPVGVFEFDQFGNGTKVL---AKAIADSAAFSIAGGGDTLAAIDKYGVSKEISYISTGGGAFLEFVEGKVLP 376          
BLAST of CF832951 vs. ExPASy Swiss-Prot
Match: PGK_DINSH (Phosphoglycerate kinase OS=Dinoroseobacter shibae (strain DFL 12) GN=pgk PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.230e-17
Identity = 49/134 (36.57%), Postives = 69/134 (51.49%), Query Frame = -3
Query:  254 LPTEVVIADKFVVDANSKVVPATAIPNGWMGLDVGPDPIKSFREALDTTKTIIWNGPMGGFEFDKF-AAGPEAIXXXXXXXXXXXXXXXXXXGDSVAPVEKVGLGDKMSHISPGGGASLELLGGKTLPGGLAFD 652
            LP ++V+A KF   A S+ +P +  P   M LD GP+ + + +E     +T+IWNGP+G FE   F  A   A                   GD+VA + K G+ D  ++IS  GGA LE + GKTLPG  A +
Sbjct:  258 LPKDIVVARKFEAGAPSQTLPVSECPRDAMILDAGPETVAALKEVFAQARTLIWNGPLGAFEIPPFDMATNAAARAAADATKAGTLITVAGGGDTVAALNKAGVADDFTYISTAGGAFLEWMEGKTLPGVAALE 391          
BLAST of CF832951 vs. ExPASy Swiss-Prot
Match: PGK_PSEPW (Phosphoglycerate kinase OS=Pseudomonas putida (strain W619) GN=pgk PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.443e-17
Identity = 48/127 (37.80%), Postives = 71/127 (55.91%), Query Frame = -3
Query:  272 LPTEVVIADKFVVDANSKVVPATAIPNGWMGLDVGPDPIKSFREALDTTKTIIWNGPMGGFEFDKFAAGPEAIXXXXXXXXXXXXXXXXXXGDSVAPVEKVGLGDKMSHISPGGGASLELLGGKTLP 652
            LP +VV+A +F   A + V     +    M LD+GP    +F E L ++KTI+WNGP+G FEFD+F  G + +                  GD++A ++K G+  ++S+IS GGGA LE + GK LP
Sbjct:  253 LPVDVVVAKEFAESAEATVKAIADVAADDMILDIGPQTAANFAELLKSSKTILWNGPVGVFEFDQFGNGTKVL---AKAIADSAAFSIAGGGDTLAAIDKYGVSAEISYISTGGGAFLEFVEGKVLP 376          
BLAST of CF832951 vs. ExPASy Swiss-Prot
Match: PGK_PSEPG (Phosphoglycerate kinase OS=Pseudomonas putida (strain GB-1) GN=pgk PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.443e-17
Identity = 48/127 (37.80%), Postives = 71/127 (55.91%), Query Frame = -3
Query:  272 LPTEVVIADKFVVDANSKVVPATAIPNGWMGLDVGPDPIKSFREALDTTKTIIWNGPMGGFEFDKFAAGPEAIXXXXXXXXXXXXXXXXXXGDSVAPVEKVGLGDKMSHISPGGGASLELLGGKTLP 652
            LP +VV+A +F   A + V     +    M LD+GP    +F E L ++KTI+WNGP+G FEFD+F  G + +                  GD++A ++K G+  ++S+IS GGGA LE + GK LP
Sbjct:  253 LPVDVVVAKEFAETAEATVKAIADVAADDMILDIGPQTAANFAELLKSSKTILWNGPVGVFEFDQFGNGTKVL---AKAIADSAAFSIAGGGDTLAAIDKYGVSKEISYISTGGGAFLEFVEGKVLP 376          
BLAST of CF832951 vs. ExPASy Swiss-Prot
Match: PGK_PSEP1 (Phosphoglycerate kinase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=pgk PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.443e-17
Identity = 48/127 (37.80%), Postives = 71/127 (55.91%), Query Frame = -3
Query:  272 LPTEVVIADKFVVDANSKVVPATAIPNGWMGLDVGPDPIKSFREALDTTKTIIWNGPMGGFEFDKFAAGPEAIXXXXXXXXXXXXXXXXXXGDSVAPVEKVGLGDKMSHISPGGGASLELLGGKTLP 652
            LP +VV+A +F   A + V     +    M LD+GP    +F E L ++KTI+WNGP+G FEFD+F  G + +                  GD++A ++K G+  ++S+IS GGGA LE + GK LP
Sbjct:  253 LPVDVVVAKEFAETAEATVKAIADVAADDMILDIGPQTAANFAELLKSSKTILWNGPVGVFEFDQFGNGTKVL---AKAIADSAAFSIAGGGDTLAAIDKYGVSKEISYISTGGGAFLEFVEGKVLP 376          
BLAST of CF832951 vs. ExPASy Swiss-Prot
Match: PGK_METEP (Phosphoglycerate kinase OS=Methylobacterium extorquens (strain PA1) GN=pgk PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.443e-17
Identity = 46/131 (35.11%), Postives = 71/131 (54.20%), Query Frame = -3
Query:  269 LLLPTEVVIADKFVVDANSKVVPATAIPNGWMGLDVGPDPIKSFREALDTTKTIIWNGPMGGFEFDKFAAGPEAI-XXXXXXXXXXXXXXXXXXGDSVAPVEKVGLGDKMSHISPGGGASLELLGGKTLPG 658
            ++LP + ++A +F  +A ++ VP  A+P+  M LDVG   I +   A++  +T++WNGP+G FE   F  G  A+                   GD+VA +   G+G+  S++S  GGA LE L GK LPG
Sbjct:  262 IILPVDALVAREFKANAENETVPVDAVPSDAMILDVGASSIATIDGAIEEARTLVWNGPLGAFELTPFDTGTVAVAQHAARRTKAGQLVSVAGGGDTVAALNHAGVGEDFSYVSTAGGAFLEWLEGKELPG 392          
BLAST of CF832951 vs. ExPASy Swiss-Prot
Match: PGKB_TRYBB (Phosphoglycerate kinase, cytosolic OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.443e-17
Identity = 52/137 (37.96%), Postives = 69/137 (50.36%), Query Frame = -3
Query:  251 LLLPTEVVIADKFVVDANSKVVPATAIPNGWMGLDVGPDPIKSFREALDTTKTIIWNGPMGGFEFDKFAAGPEAI-XXXXXXXXXXXXXXXXXXGDSVAPVEKVGLGDKMSHISPGGGASLELLGGKTLPGGLAFDD 658
            ++LP + V   +F    +  +     IP G M LD+GP  I+ + + +   K+ IWNGPMG FE   ++ G  AI                   GDS +  E  G   +MSH+S GGGASLELL GKTLPG    DD
Sbjct:  283 IILPIDHVCHTEFKAVDSPLITEDQNIPEGHMALDIGPKTIEKYVQTIGKCKSAIWNGPMGVFEMVPYSKGTFAIAKAMGRGTHEHGLMSIIGGGDSASAAELSGEAKRMSHVSTGGGASLELLEGKTLPGVTVLDD 419          
BLAST of CF832951 vs. ExPASy Swiss-Prot
Match: PGK_STRAW (Phosphoglycerate kinase OS=Streptomyces avermitilis GN=pgk PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.233e-16
Identity = 56/142 (39.44%), Postives = 72/142 (50.70%), Query Frame = -3
Query:  251 LLLPTEVVIADKFV-----VDANSKVVPATAIPNGWMGLDVGPDPIKSFREALDTTKTIIWNGPMGGFEFDKFAAGPEAIXXXXXXXXXXXXXXXXXXGDSVAPVEKVGLGD-KMSHISPGGGASLELLGGKTLPGGLAFDD 658
            L+LP +V+++ +F        AN   V A AIP    GLD+GP+  K +   L    T+ WNGPMG FE   +A G +A+                  GDS A V  +G  +    HIS GGGASLE L GKTLPG  A +D
Sbjct:  265 LVLPVDVLVSTEFPDLKTKAPANPTTVAADAIPADQEGLDIGPETRKLYASKLADAATVFWNGPMGVFEHPDYAEGTKAV---AQALVDSQAFTVVGGGDSAAAVRILGFDETAFGHISTGGGASLEYLEGKTLPGLAALED 403          
BLAST of CF832951 vs. ExPASy Swiss-Prot
Match: PGK_PSEHT (Phosphoglycerate kinase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=pgk PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.233e-16
Identity = 47/131 (35.88%), Postives = 72/131 (54.96%), Query Frame = -3
Query:  272 GFLLLPTEVVIADKFVVDANSKVVPATAIPNGWMGLDVGPDPIKSFREALDTTKTIIWNGPMGGFEFDKFAAGPEAIXXXXXXXXXXXXXXXXXXGDSVAPVEKVGLGDKMSHISPGGGASLELLGGKTLP 664
            G + +PT+VV+ ++F   A + +   + + +  M  D+GPD      + +    T++WNGP+G FEFD+F  G  AI                  GD++A ++K G+ DK+S+IS GGGA LE L GK LP
Sbjct:  254 GEIPVPTDVVVGNEFSDSAVATLKDVSEVTSDDMIFDIGPDTANKLAKIIANAGTVVWNGPVGVFEFDQFGNGTRAI---AQAIANSNAFSIAGGGDTLAAIDKYGISDKISYISTGGGAFLEFLEGKKLP 381          
The following BLAST results are available for this feature:
BLAST of CF832951 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_HELHP5.536e-1739.53Phosphoglycerate kinase OS=Helicobacter hepaticus ... [more]
PGK_PSEPK7.230e-1737.80Phosphoglycerate kinase OS=Pseudomonas putida (str... [more]
PGK_DINSH7.230e-1736.57Phosphoglycerate kinase OS=Dinoroseobacter shibae ... [more]
PGK_PSEPW9.443e-1737.80Phosphoglycerate kinase OS=Pseudomonas putida (str... [more]
PGK_PSEPG9.443e-1737.80Phosphoglycerate kinase OS=Pseudomonas putida (str... [more]
PGK_PSEP19.443e-1737.80Phosphoglycerate kinase OS=Pseudomonas putida (str... [more]
PGK_METEP9.443e-1735.11Phosphoglycerate kinase OS=Methylobacterium extorq... [more]
PGKB_TRYBB9.443e-1737.96Phosphoglycerate kinase, cytosolic OS=Trypanosoma ... [more]
PGK_STRAW1.233e-1639.44Phosphoglycerate kinase OS=Streptomyces avermitili... [more]
PGK_PSEHT1.233e-1635.88Phosphoglycerate kinase OS=Pseudoalteromonas halop... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02L16_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02L16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832951 ID=CF832951; Name=CF832951; organism=Citrus sinensis; type=EST; length=672bp
TTTTTTTTTTTTTTTTTCCCGGAAACTTAAACCCTTACCATCCCAATGTT
CCAAAATGGGATCAAATCCAAAAAAATGCCTCCCCATTGATGCCTGGGAA
AAAAAATTTTTTTTTACTCTTACGGCATCTACAAAACCAACTCTAATGAT
AAAGTTTAACTTTTATCCCCTCGGGGCTGACAACCACCCCCACATACAAC
TCGGGAAATGGGCCATTTAAAAAAGGAAAGCCCAGGAACTGGGTTTAACC
ATCATCAAAAGCAAGCCCCCCAGGGAGTGTTTTGCCCCCAAGGAGCTCTA
AGCTGGCTCCCCCTCCAGGGGAAATATGGCTCATCTTGTCACCCAAACCA
ACCTTCTCTACGGGTGCAACTGAGTCCCCCCCCCCAATGATTGGGGGCCC
TCCCTTCCCGCTGAGCTCCCCAAGCTTCTTGGAAATTGCCTCAGGGCCAG
CAGCAAATTTATCAAATTCAAACCCCCCCATAGGCCCATTCCAAATGATG
GTTTTAGTAGTATCCAAAGCTTCCCTGAATGACTTGATGGGATCAGGGCC
AACATCCAAGCCCATCCAACCATTTGGAATTGCCGTTGCTGGCACCACCT
TGCTGTTGGCATCAACAACAAACTTGTCAGCAATAACAACCTCCGTAGGG
AGCAAAAGAAACCCCCCTTTAA
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