CF832952

Overview
NameCF832952
Unique NameCF832952
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length637
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832952 vs. ExPASy Swiss-Prot
Match: PGK_CLONN (Phosphoglycerate kinase OS=Clostridium novyi (strain NT) GN=pgk PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.754e-39
Identity = 79/141 (56.03%), Postives = 101/141 (71.63%), Query Frame = 1
Query:    1 SKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 423
            +KGV LLLP D V+ ++F A+          IP+G+MGLD+GP     +++A+ T KT++WNGPMGVFEF  FA GT A+A+ +AE      TTIIGGGDS AAV ++G  DKM+HISTGGGASLE LEGK LPG++AL D
Sbjct:  260 AKGVKLLLPVDNVVGEEFDANTTPVTTEDANIPEGYMGLDIGPKTSALYADAVRTAKTVVWNGPMGVFEFANFAKGTIAVAEAMAEAD---ATTIIGGGDSAAAVNQLGFGDKMTHISTGGGASLEFLEGKELPGIVALSD 397          
BLAST of CF832952 vs. ExPASy Swiss-Prot
Match: PGK_TREDE (Phosphoglycerate kinase OS=Treponema denticola GN=pgk PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.597e-39
Identity = 75/139 (53.96%), Postives = 103/139 (74.10%), Query Frame = 1
Query:    4 KGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALD 420
            +GV ++LP D + ++ F+ +A + +V +T IPD  MG+DVGP  +  + E + ++K+I+WNGP+GVFEF+ F+ GTE  A+ +A  + KG  TI+GGGDSVAAV K  LADKMSH+STGGGASLE LEGK LPG+  LD
Sbjct:  279 QGVKIILPVDHICSETFSPNAEAVLVESTDIPDNLMGMDVGPKTLALYKEIILSSKSIVWNGPVGVFEFEAFSKGTEETARLVAAATEKGALTIVGGGDSVAAVNKFNLADKMSHVSTGGGASLEFLEGKVLPGIACLD 417          
BLAST of CF832952 vs. ExPASy Swiss-Prot
Match: PGK_LEPBP (Phosphoglycerate kinase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=pgk PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.597e-39
Identity = 78/138 (56.52%), Postives = 101/138 (73.19%), Query Frame = 1
Query:    4 KGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLAL 417
            +GV L +P D +IAD F  +A +K V    I DGWMG+D+GP  I ++ +A+   KTI+WNGPMGVFE DKF+ GT  IAK +++   K   T++GGGDS+AAV K G+ADK++HISTGGGASLE LEG+TLPGV  L
Sbjct:  256 QGVDLQIPVDHIIADAFDPNAKTKSVDKMGIIDGWMGMDIGPKTIDNYVKAIKDAKTILWNGPMGVFEMDKFSKGTIEIAKAISKSKAK---TVVGGGDSIAAVNKAGVADKITHISTGGGASLEFLEGRTLPGVQCL 390          
BLAST of CF832952 vs. ExPASy Swiss-Prot
Match: PGK_LEPBA (Phosphoglycerate kinase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=pgk PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.597e-39
Identity = 78/138 (56.52%), Postives = 101/138 (73.19%), Query Frame = 1
Query:    4 KGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLAL 417
            +GV L +P D +IAD F  +A +K V    I DGWMG+D+GP  I ++ +A+   KTI+WNGPMGVFE DKF+ GT  IAK +++   K   T++GGGDS+AAV K G+ADK++HISTGGGASLE LEG+TLPGV  L
Sbjct:  256 QGVDLQIPVDHIIADAFDPNAKTKSVDKMGIIDGWMGMDIGPKTIDNYVKAIKDAKTILWNGPMGVFEMDKFSKGTIEIAKAISKSKAK---TVVGGGDSIAAVNKAGVADKITHISTGGGASLEFLEGRTLPGVQCL 390          
BLAST of CF832952 vs. ExPASy Swiss-Prot
Match: PGK_FRASN (Phosphoglycerate kinase OS=Frankia sp. (strain EAN1pec) GN=pgk PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.597e-39
Identity = 84/139 (60.43%), Postives = 103/139 (74.10%), Query Frame = 1
Query:    7 GVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGL-ADKMSHISTGGGASLELLEGKTLPGVLALD 420
            G  L+LPTDVV+AD+FAADA + VV A AIPDGW+GLD+GP +  +F+  +    TI WNGPMGVFEF  FA GT  +A+ +A  SG G  +++GGGDS AAV  +G+  D  SHISTGGGASLE LEGKTLPG+ ALD
Sbjct:  264 GDRLVLPTDVVVADRFAADAETAVVAADAIPDGWLGLDIGPASTAAFARVVAGAATIFWNGPMGVFEFAPFAEGTRGVAEAVA--SGGGF-SVVGGGDSAAAVRILGIPEDDFSHISTGGGASLEYLEGKTLPGLAALD 399          
BLAST of CF832952 vs. ExPASy Swiss-Prot
Match: PGK_CLOB6 (Phosphoglycerate kinase OS=Clostridium botulinum (strain 657 / Type Ba4) GN=pgk PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.597e-39
Identity = 81/140 (57.86%), Postives = 100/140 (71.43%), Query Frame = 1
Query:    4 KGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 423
            KGV+LLLP D V+ADKF  DA+  V     I +G+MGLD+GP   K +S+A+ + KT++WNGPMGVFEF  FA GT  +AK +A+       TIIGGGDS AAV  +G  D M+HISTGGGASLE LEGK LPG+ AL+D
Sbjct:  261 KGVNLLLPIDNVVADKFDKDASPVVTEDQNIGEGYMGLDIGPKTAKIYSDAIKSAKTVVWNGPMGVFEFKSFANGTIEVAKAMAD---SDAVTIIGGGDSAAAVNILGFGDNMTHISTGGGASLEFLEGKELPGIAALND 397          
BLAST of CF832952 vs. ExPASy Swiss-Prot
Match: PGK_CORU7 (Phosphoglycerate kinase OS=Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) GN=pgk PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 4.697e-39
Identity = 78/138 (56.52%), Postives = 100/138 (72.46%), Query Frame = 1
Query:    7 GVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADK-MSHISTGGGASLELLEGKTLPGVLAL 417
            G  ++LPTDVV A+ F+ DA  K V  + IP GWMGLD+GP++  +F+  L   KT+ WNGPMGVFEF  FAAGT+A+A+ + + +  G  +++GGGDS AAV  +GL +K  SHISTGGGASLE LEGKTLPGV  L
Sbjct:  264 GDVIVLPTDVVAAENFSKDAEHKAVGLSEIPSGWMGLDIGPESADAFAAVLGEAKTVFWNGPMGVFEFPAFAAGTKAVAEAIIKATDAGAFSVVGGGDSAAAVRTLGLDEKGFSHISTGGGASLEFLEGKTLPGVEVL 401          
BLAST of CF832952 vs. ExPASy Swiss-Prot
Match: PGK_THEAB (Phosphoglycerate kinase OS=Thermosipho africanus (strain TCF52B) GN=pgk PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 6.135e-39
Identity = 74/139 (53.24%), Postives = 98/139 (70.50%), Query Frame = 1
Query:    4 KGVSLLLPTDVVIADKFAADANSKVVPAT-AIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLAL 417
            KG  ++LP D V A K  A   +K +     +P+GWMGLD+GP  ++ F  ++   KTI+WNGPMGVFE + F+ GT+ +A  +AE + KG TTIIGGGDS AA+ K GL DK+SH+STGGGASLE LEGK LPG+ ++
Sbjct:  256 KGTEIVLPVDTVCAQKIEAGVETKTIDIKDGLPEGWMGLDIGPKTVELFRNSISGAKTIVWNGPMGVFEIEDFSNGTKEVAIAIAEETSKGATTIIGGGDSAAAIAKFGLKDKVSHVSTGGGASLEFLEGKELPGIASI 394          
BLAST of CF832952 vs. ExPASy Swiss-Prot
Match: PGK_BACCZ (Phosphoglycerate kinase OS=Bacillus cereus (strain ZK / E33L) GN=pgk PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 6.135e-39
Identity = 74/140 (52.86%), Postives = 103/140 (73.57%), Query Frame = 1
Query:    4 KGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 423
            KGV+  +P DVVI ++F+  A +K+V   +IP  W G+D+GP   + +++ +  +K ++WNGPMGVFE   FA GT+A+ + LA+   +G  ++IGGGDS AAVEK G+ADKMSHISTGGGASLE +EGK LPGV+ L+D
Sbjct:  256 KGVNFYMPVDVVITEEFSETATTKIVGIDSIPSNWEGVDIGPKTREIYADVIKNSKLVVWNGPMGVFEMTPFAEGTKAVGQALAD--AEGTYSVIGGGDSAAAVEKFGMADKMSHISTGGGASLEFMEGKELPGVVCLND 393          
BLAST of CF832952 vs. ExPASy Swiss-Prot
Match: PGK_BACC3 (Phosphoglycerate kinase OS=Bacillus cereus (strain 03BB102) GN=pgk PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 6.135e-39
Identity = 74/140 (52.86%), Postives = 103/140 (73.57%), Query Frame = 1
Query:    4 KGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 423
            KGV+  +P DVVI ++F+  A +K+V   +IP  W G+D+GP   + +++ +  +K ++WNGPMGVFE   FA GT+A+ + LA+   +G  ++IGGGDS AAVEK G+ADKMSHISTGGGASLE +EGK LPGV+ L+D
Sbjct:  256 KGVNFYMPVDVVITEEFSETATTKIVGIDSIPSNWEGVDIGPKTREIYADVIKNSKLVVWNGPMGVFEMTPFAEGTKAVGQALAD--AEGTYSVIGGGDSAAAVEKFGMADKMSHISTGGGASLEFMEGKELPGVVCLND 393          
The following BLAST results are available for this feature:
BLAST of CF832952 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_CLONN2.754e-3956.03Phosphoglycerate kinase OS=Clostridium novyi (stra... [more]
PGK_TREDE3.597e-3953.96Phosphoglycerate kinase OS=Treponema denticola GN=... [more]
PGK_LEPBP3.597e-3956.52Phosphoglycerate kinase OS=Leptospira biflexa sero... [more]
PGK_LEPBA3.597e-3956.52Phosphoglycerate kinase OS=Leptospira biflexa sero... [more]
PGK_FRASN3.597e-3960.43Phosphoglycerate kinase OS=Frankia sp. (strain EAN... [more]
PGK_CLOB63.597e-3957.86Phosphoglycerate kinase OS=Clostridium botulinum (... [more]
PGK_CORU74.697e-3956.52Phosphoglycerate kinase OS=Corynebacterium urealyt... [more]
PGK_THEAB6.135e-3953.24Phosphoglycerate kinase OS=Thermosipho africanus (... [more]
PGK_BACCZ6.135e-3952.86Phosphoglycerate kinase OS=Bacillus cereus (strain... [more]
PGK_BACC36.135e-3952.86Phosphoglycerate kinase OS=Bacillus cereus (strain... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02L16_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02L16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832952 ID=CF832952; Name=CF832952; organism=Citrus sinensis; type=EST; length=637bp
TCTAAAGGGGTGTCTCTTCTGCTCCCTACTGATGTTGTTATTGCTGACAA
GTTTGCTGCTGATGCCAACAGCAAGGTGGTGCCAGCAACGGCAATTCCAG
ATGGTTGGATGGGCTTGGATGTTGGACCTGATGCCATCAAGTCATTCAGT
GAAGCTTTGGATACTACTAAAACCATCATCTGGAATGGACCTATGGGTGT
GTTTGAATTTGATAAATTTGCTGCTGGCACTGAGGCAATTGCCAAGAAGC
TTGCGGAGCTCAGCGGGAAGGGAGTGACCACAATCATTGGAGGAGGTGAC
TCAGTTGCAGCCGTAGAGAAGGTTGGTCTGGCTGACAAGATGAGCCATAT
CTCCACTGGAGGTGGAGCCAGCTTAGAGCTCCTTGAGGGCAAAACACTCC
CTGGTGTGCTTGCTCTTGATGATGCTTAAACCCAGTTCCTGGACTTTCCT
TTTTTAAATGTGCCATTTCCAGAGTTGTATGTGTGGCTGGTTGTCAGCCC
AGAGTGGATAAAAGTTAAACTTTATCATTAGAGTTGGTTTTGTAGATGCT
GTAAGAGTAAAAATAAATTCTTTCTCACAGGCATCAATGGTGATGCATTT
TTCTGGATTTGATCCCATTTTGGAACATTGTGATGGT
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