CF832952

Overview
NameCF832952
Unique NameCF832952
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length637
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832952 vs. ExPASy Swiss-Prot
Match: PGK_MYCA9 (Phosphoglycerate kinase OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=pgk PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.046e-38
Identity = 78/135 (57.78%), Postives = 98/135 (72.59%), Query Frame = 1
Query:   22 LPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADK-MSHISTGGGASLELLEGKTLPGVLALDD 423
            LP D+V AD+FAAD+ S++V A AIPD  MGLD+GP+++K F+  L   KTI WNGPMGVFEF  FAAGT  +A+ +   + KG  +++GGGDS AAV  + L D   SHISTGGGASLE LEGK LPG+  L+D
Sbjct:  278 LPMDIVAADEFAADSPSEIVAADAIPDSKMGLDIGPESVKRFAAVLSNAKTIFWNGPMGVFEFPAFAAGTRGVAEAIIAATEKGAFSVVGGGDSAAAVRALDLPDDGFSHISTGGGASLEYLEGKVLPGIDVLED 412          
BLAST of CF832952 vs. ExPASy Swiss-Prot
Match: PGK_KLULA (Phosphoglycerate kinase OS=Kluyveromyces lactis GN=PGK PE=3 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 1.046e-38
Identity = 80/139 (57.55%), Postives = 98/139 (70.50%), Query Frame = 1
Query:   10 VSLLLPTDVVIADKFAADANSKVVP-ATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 423
            V ++LPTD VI DKF+ADAN+KVV     IP GW GLD GP++ K+F+  +   KTI+WNGP GVFEF  FA GTEA+   +   S  G T IIGGGD+    +K G+ DK+SH+STGGGASLELLEGK LPGV  L +
Sbjct:  276 VKIVLPTDFVIGDKFSADANTKVVTDKEGIPSGWQGLDNGPESRKAFAATVAEAKTIVWNGPPGVFEFAPFAKGTEALLDAVVASSQAGNTVIIGGGDTATVAKKYGVVDKISHVSTGGGASLELLEGKELPGVTFLSN 414          
BLAST of CF832952 vs. ExPASy Swiss-Prot
Match: PGK_FRASC (Phosphoglycerate kinase OS=Frankia sp. (strain CcI3) GN=pgk PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.046e-38
Identity = 82/139 (58.99%), Postives = 104/139 (74.82%), Query Frame = 1
Query:    7 GVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGL-ADKMSHISTGGGASLELLEGKTLPGVLALD 420
            G  ++LPTDVV+AD+FAADA++ VV A AIP GW+GLD+GP + + F+  L    T+ WNGPMGVFE   FAAGT  +A+ +A  +GKG  +++GGGDS AAV  +G+  D  SHISTGGGASLE LEGKTLPG+ ALD
Sbjct:  264 GERIVLPTDVVVADRFAADADTAVVAADAIPAGWLGLDIGPASTELFAARLAGAATVFWNGPMGVFELAPFAAGTRGVAEAVA--AGKGF-SVVGGGDSAAAVRTLGIPEDAFSHISTGGGASLEYLEGKTLPGLAALD 399          
BLAST of CF832952 vs. ExPASy Swiss-Prot
Match: PGK_LACCB (Phosphoglycerate kinase OS=Lactobacillus casei (strain BL23) GN=pgk PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.367e-38
Identity = 80/139 (57.55%), Postives = 100/139 (71.94%), Query Frame = 1
Query:    7 GVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 423
            G  LLLP D V+A +F+ DA  KVV    IPDG+M LD+GP  IK F +AL   KT++WNGPMGVFE   +A GT  + + L +L  K  TTIIGGGDS AA +++G+A K++HISTGGGASLE LEGKTLPG+ A+ D
Sbjct:  260 GDKLLLPVDSVVATEFSNDAPHKVVDGD-IPDGYMALDIGPKTIKEFKDALQGAKTVVWNGPMGVFEMSNYAEGTLEVGRALGDL--KDATTIIGGGDSTAAAKQLGIAPKITHISTGGGASLEYLEGKTLPGIAAISD 395          
BLAST of CF832952 vs. ExPASy Swiss-Prot
Match: PGK_LACC3 (Phosphoglycerate kinase OS=Lactobacillus casei (strain ATCC 334) GN=pgk PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.367e-38
Identity = 80/139 (57.55%), Postives = 100/139 (71.94%), Query Frame = 1
Query:    7 GVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 423
            G  LLLP D V+A +F+ DA  KVV    IPDG+M LD+GP  IK F +AL   KT++WNGPMGVFE   +A GT  + + L +L  K  TTIIGGGDS AA +++G+A K++HISTGGGASLE LEGKTLPG+ A+ D
Sbjct:  260 GDKLLLPVDSVVATEFSNDAPHKVVDGD-IPDGYMALDIGPKTIKEFKDALQGAKTVVWNGPMGVFEMSNYAEGTLEVGRALGDL--KDATTIIGGGDSTAAAKQLGIAPKITHISTGGGASLEYLEGKTLPGIAAISD 395          
BLAST of CF832952 vs. ExPASy Swiss-Prot
Match: PGK_CHICK (Phosphoglycerate kinase OS=Gallus gallus GN=PGK PE=2 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 1.367e-38
Identity = 77/138 (55.80%), Postives = 98/138 (71.01%), Query Frame = 1
Query:    7 GVSLLLPTDVVIADKFAADANS-KVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLAL 417
            GV + LP D + ADKF   A + +   A+ IP GWMGLD GP+++K F E +   K I+WNGP+GVFE+DKF+ GT+A+  K+ E++GKG  TIIGGGD+     K    DK+SH+STGGGASLELLEGK LPGV AL
Sbjct:  277 GVKITLPVDFITADKFDEHAQTGEATVASGIPAGWMGLDCGPESVKKFVEVVGRAKQIVWNGPVGVFEWDKFSKGTKALMDKVVEVTGKGCITIIGGGDTATCCAKWNTEDKVSHVSTGGGASLELLEGKVLPGVDAL 414          
BLAST of CF832952 vs. ExPASy Swiss-Prot
Match: PGK_BACHK (Phosphoglycerate kinase OS=Bacillus thuringiensis subsp. konkukian GN=pgk PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.367e-38
Identity = 73/140 (52.14%), Postives = 103/140 (73.57%), Query Frame = 1
Query:    4 KGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 423
            KGV+  +P DVVI ++F+  A +K+V   +IP  W G+D+GP   + +++ +  +K ++WNGPMGVFE   F+ GT+A+ + LA+   +G  ++IGGGDS AAVEK G+ADKMSHISTGGGASLE +EGK LPGV+ L+D
Sbjct:  256 KGVNFYMPVDVVITEEFSETATTKIVGIDSIPSNWEGVDIGPKTREIYADVIKNSKLVVWNGPMGVFEMTPFSQGTKAVGQALAD--AEGTYSVIGGGDSAAAVEKFGMADKMSHISTGGGASLEFMEGKELPGVVCLND 393          
BLAST of CF832952 vs. ExPASy Swiss-Prot
Match: PGK_BACCQ (Phosphoglycerate kinase OS=Bacillus cereus (strain Q1) GN=pgk PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.367e-38
Identity = 73/140 (52.14%), Postives = 103/140 (73.57%), Query Frame = 1
Query:    4 KGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 423
            KGV+  +P DVVI ++F+  A +K+V   +IP  W G+D+GP   + +++ +  +K ++WNGPMGVFE   F+ GT+A+ + LA+   +G  ++IGGGDS AAVEK G+ADKMSHISTGGGASLE +EGK LPGV+ L+D
Sbjct:  256 KGVNFYMPVDVVITEEFSETATTKIVGIDSIPSNWEGVDIGPKTREIYADVIKNSKLVVWNGPMGVFEMTPFSQGTKAVGQALAD--AEGTYSVIGGGDSAAAVEKFGMADKMSHISTGGGASLEFMEGKELPGVVCLND 393          
BLAST of CF832952 vs. ExPASy Swiss-Prot
Match: PGK_BACC7 (Phosphoglycerate kinase OS=Bacillus cereus (strain AH187) GN=pgk PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.367e-38
Identity = 73/140 (52.14%), Postives = 103/140 (73.57%), Query Frame = 1
Query:    4 KGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 423
            KGV+  +P DVVI ++F+  A +K+V   +IP  W G+D+GP   + +++ +  +K ++WNGPMGVFE   F+ GT+A+ + LA+   +G  ++IGGGDS AAVEK G+ADKMSHISTGGGASLE +EGK LPGV+ L+D
Sbjct:  256 KGVNFYMPVDVVITEEFSETATTKIVNIDSIPSNWEGVDIGPKTREIYADVIKNSKLVVWNGPMGVFEMTPFSQGTKAVGQALAD--AEGTYSVIGGGDSAAAVEKFGMADKMSHISTGGGASLEFMEGKELPGVVCLND 393          
BLAST of CF832952 vs. ExPASy Swiss-Prot
Match: PGK_YARLI (Phosphoglycerate kinase OS=Yarrowia lipolytica GN=PGK1 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.785e-38
Identity = 77/139 (55.40%), Postives = 93/139 (66.91%), Query Frame = 1
Query:   10 VSLLLPTDVVIADKFAADAN-SKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 423
            V L+ P D V ADKF+ DA       A  IPDGW GLD GP +I+ F + +  +KTI+WNGP GVFEFD FA GT+A+     +    G T IIGGGD+    +K G  DK+SH+STGGGASLELLEGKTLPGV AL +
Sbjct:  277 VKLVFPVDYVTADKFSKDAKVGHATDAEGIPDGWQGLDCGPKSIEEFQKVIGESKTILWNGPPGVFEFDNFAKGTKAVLDACVKAVDNGATVIIGGGDTATVAKKYGAEDKLSHVSTGGGASLELLEGKTLPGVAALSE 415          
The following BLAST results are available for this feature:
BLAST of CF832952 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_MYCA91.046e-3857.78Phosphoglycerate kinase OS=Mycobacterium abscessus... [more]
PGK_KLULA1.046e-3857.55Phosphoglycerate kinase OS=Kluyveromyces lactis GN... [more]
PGK_FRASC1.046e-3858.99Phosphoglycerate kinase OS=Frankia sp. (strain CcI... [more]
PGK_LACCB1.367e-3857.55Phosphoglycerate kinase OS=Lactobacillus casei (st... [more]
PGK_LACC31.367e-3857.55Phosphoglycerate kinase OS=Lactobacillus casei (st... [more]
PGK_CHICK1.367e-3855.80Phosphoglycerate kinase OS=Gallus gallus GN=PGK PE... [more]
PGK_BACHK1.367e-3852.14Phosphoglycerate kinase OS=Bacillus thuringiensis ... [more]
PGK_BACCQ1.367e-3852.14Phosphoglycerate kinase OS=Bacillus cereus (strain... [more]
PGK_BACC71.367e-3852.14Phosphoglycerate kinase OS=Bacillus cereus (strain... [more]
PGK_YARLI1.785e-3855.40Phosphoglycerate kinase OS=Yarrowia lipolytica GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_02L16_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02L16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832952 ID=CF832952; Name=CF832952; organism=Citrus sinensis; type=EST; length=637bp
TCTAAAGGGGTGTCTCTTCTGCTCCCTACTGATGTTGTTATTGCTGACAA
GTTTGCTGCTGATGCCAACAGCAAGGTGGTGCCAGCAACGGCAATTCCAG
ATGGTTGGATGGGCTTGGATGTTGGACCTGATGCCATCAAGTCATTCAGT
GAAGCTTTGGATACTACTAAAACCATCATCTGGAATGGACCTATGGGTGT
GTTTGAATTTGATAAATTTGCTGCTGGCACTGAGGCAATTGCCAAGAAGC
TTGCGGAGCTCAGCGGGAAGGGAGTGACCACAATCATTGGAGGAGGTGAC
TCAGTTGCAGCCGTAGAGAAGGTTGGTCTGGCTGACAAGATGAGCCATAT
CTCCACTGGAGGTGGAGCCAGCTTAGAGCTCCTTGAGGGCAAAACACTCC
CTGGTGTGCTTGCTCTTGATGATGCTTAAACCCAGTTCCTGGACTTTCCT
TTTTTAAATGTGCCATTTCCAGAGTTGTATGTGTGGCTGGTTGTCAGCCC
AGAGTGGATAAAAGTTAAACTTTATCATTAGAGTTGGTTTTGTAGATGCT
GTAAGAGTAAAAATAAATTCTTTCTCACAGGCATCAATGGTGATGCATTT
TTCTGGATTTGATCCCATTTTGGAACATTGTGATGGT
back to top