CF832952

Overview
NameCF832952
Unique NameCF832952
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length637
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2633 contig Csv1_Contig2633:112..748. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832952 vs. ExPASy Swiss-Prot
Match: PGK_SYNSC (Phosphoglycerate kinase OS=Synechococcus sp. (strain CC9605) GN=pgk PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 4.229e-56
Identity = 108/142 (76.06%), Postives = 118/142 (83.10%), Query Frame = 1
Query:    1 SKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 426
            + GV LLLPTDVV+AD FA DANS+     AIPDGWMGLD+GPD+IK F EAL   +T+IWNGPMGVFEFDKFA GT +IA  LA+LSGKG  TIIGGGDSVAAVEK GLA+KMSHISTGGGASLELLEGK LPGV ALD A
Sbjct:  260 ANGVQLLLPTDVVLADNFAPDANSQTADINAIPDGWMGLDIGPDSIKVFQEALADCQTVIWNGPMGVFEFDKFATGTNSIATTLADLSGKGCCTIIGGGDSVAAVEKAGLAEKMSHISTGGGASLELLEGKVLPGVAALDAA 401          
BLAST of CF832952 vs. ExPASy Swiss-Prot
Match: PGK_SYNP6 (Phosphoglycerate kinase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=pgk PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 5.523e-56
Identity = 106/141 (75.18%), Postives = 120/141 (85.11%), Query Frame = 1
Query:    4 KGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 426
            KGV LLLP DVV+ADKFA DAN+K V   AIPDGWMGLD+GP+++K F  AL   +++IWNGPMGVFEFD+FA GTEAIA+ LA L+ KG TTIIGGGDSVAAVEKVG+A +MSHISTGGGASLELLEGK LPGV ALDDA
Sbjct:  261 KGVQLLLPVDVVVADKFAPDANAKTVAIDAIPDGWMGLDIGPESVKQFEGALADCRSVIWNGPMGVFEFDQFAVGTEAIARSLAGLTRKGATTIIGGGDSVAAVEKVGVASEMSHISTGGGASLELLEGKVLPGVAALDDA 401          
BLAST of CF832952 vs. ExPASy Swiss-Prot
Match: PGK_SYNY3 (Phosphoglycerate kinase OS=Synechocystis sp. (strain PCC 6803) GN=pgk PE=3 SV=2)

HSP 1 Score: 216.853 bits (551), Expect = 7.213e-56
Identity = 105/140 (75.00%), Postives = 118/140 (84.29%), Query Frame = 1
Query:    4 KGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 423
            KGV  LLPTDVV+AD FA DAN++ V   AIPDGWMGLD+GPD++K+F +AL    T+IWNGPMGVFEFDKFA GTEAIA  LAEL+  G  TIIGGGDSVAAVEKVG+A+KMSHISTGGGASLELLEGK LPG+ ALDD
Sbjct:  261 KGVEFLLPTDVVVADNFAPDANAQTVGVDAIPDGWMGLDIGPDSVKTFQDALAGCGTVIWNGPMGVFEFDKFAVGTEAIACSLAELTASGTVTIIGGGDSVAAVEKVGVAEKMSHISTGGGASLELLEGKVLPGIAALDD 400          
BLAST of CF832952 vs. ExPASy Swiss-Prot
Match: PGK_CYAP8 (Phosphoglycerate kinase OS=Cyanothece sp. (strain PCC 8801) GN=pgk PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 9.421e-56
Identity = 106/140 (75.71%), Postives = 118/140 (84.29%), Query Frame = 1
Query:    4 KGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 423
            KGV  LLPTDVV+AD FA DAN+K V   AI DGWMGLD+GP+++K F  AL   K++IWNGPMGVFEFDKFA GTEAIA  LAEL+GKG  TIIGGGDSVAAVEKVG+ADKMSHISTGGGASLELLEGK LPG+ ALD+
Sbjct:  260 KGVDFLLPTDVVLADNFAPDANAKTVSIDAIEDGWMGLDIGPESVKVFQAALADCKSVIWNGPMGVFEFDKFAKGTEAIAHTLAELTGKGTITIIGGGDSVAAVEKVGVADKMSHISTGGGASLELLEGKVLPGIAALDE 399          
BLAST of CF832952 vs. ExPASy Swiss-Prot
Match: PGK_MICAN (Phosphoglycerate kinase OS=Microcystis aeruginosa (strain NIES-843) GN=pgk PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.607e-55
Identity = 103/141 (73.05%), Postives = 120/141 (85.11%), Query Frame = 1
Query:    4 KGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 426
            KGV  LLPTDVV+ADKF  DA S++V    IPDGWMGLD+GP+++K F EAL   K+++WNGPMGVFEFDKFAAGT+AIA  LA+L+  G TTIIGGGDSVAAVEKVG+A+KMSHISTGGGASLELLEGK LPG+ ALD+A
Sbjct:  262 KGVEFLLPTDVVLADKFDKDAESQIVKVENIPDGWMGLDIGPESVKVFQEALSNCKSVLWNGPMGVFEFDKFAAGTDAIAHTLADLTATGTTTIIGGGDSVAAVEKVGVAEKMSHISTGGGASLELLEGKVLPGIAALDEA 402          
BLAST of CF832952 vs. ExPASy Swiss-Prot
Match: PGK_PROM4 (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain MIT 9211) GN=pgk PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 2.741e-55
Identity = 104/141 (73.76%), Postives = 120/141 (85.11%), Query Frame = 1
Query:    1 SKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 423
            SKGV LLLPTDVV+AD F+ DANS++    +IP+GWMGLD+GPD++K F +AL+  +T+IWNGPMGVFEFDKFA GT +IA  L+ LS KG  TIIGGGDSVAAVEK GLADKMSHISTGGGASLELLEGKTLPGV ALD+
Sbjct:  260 SKGVELLLPTDVVLADNFSPDANSQIAQINSIPEGWMGLDIGPDSVKLFQDALEDCQTVIWNGPMGVFEFDKFANGTNSIATTLSVLSQKGCCTIIGGGDSVAAVEKAGLADKMSHISTGGGASLELLEGKTLPGVAALDE 400          
BLAST of CF832952 vs. ExPASy Swiss-Prot
Match: PGK_ACAM1 (Phosphoglycerate kinase OS=Acaryochloris marina (strain MBIC 11017) GN=pgk PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 6.106e-55
Identity = 102/141 (72.34%), Postives = 120/141 (85.11%), Query Frame = 1
Query:    4 KGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 426
            KGV+LLLP+DVV+AD FAADAN++ V    IPDGWMGLD+GP+++K F  AL   KT+IWNGPMGVFEFDKFAAGT+A+A  LA ++  G  TIIGGGDSVAAVEKVG+A+KMSHISTGGGASLELLEGK LPG+ ALD+A
Sbjct:  261 KGVALLLPSDVVVADNFAADANAQTVSINNIPDGWMGLDIGPNSVKEFQAALSDCKTVIWNGPMGVFEFDKFAAGTDAVAHSLAAITETGADTIIGGGDSVAAVEKVGVAEKMSHISTGGGASLELLEGKVLPGIAALDEA 401          
BLAST of CF832952 vs. ExPASy Swiss-Prot
Match: PGK_SYNP2 (Phosphoglycerate kinase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=pgk PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.320e-54
Identity = 104/137 (75.91%), Postives = 115/137 (83.94%), Query Frame = 1
Query:   16 LLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 426
            +LLPTDV++ADKFA DA +K V   AIPDGWMGLD+G D++K F EALD   T IWNGPMGVFEFDKFA GTEAIAK LA  +  G  TIIGGGDSVAAVEKVG+ADKMSHISTGGGASLELLEGK LPG++ALDDA
Sbjct:  262 ILLPTDVIVADKFAPDAEAKTVSVDAIPDGWMGLDIGADSVKVFQEALDGCGTAIWNGPMGVFEFDKFAVGTEAIAKTLAGATETGTVTIIGGGDSVAAVEKVGVADKMSHISTGGGASLELLEGKELPGIVALDDA 398          
BLAST of CF832952 vs. ExPASy Swiss-Prot
Match: PGKH_VOLCA (Phosphoglycerate kinase, chloroplastic OS=Volvox carteri GN=PGK PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.031e-54
Identity = 102/141 (72.34%), Postives = 120/141 (85.11%), Query Frame = 1
Query:    1 SKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 423
            +KGV LLLP+DVV+ADKF A+AN++ V   AIPDGWMGLD+GPD+IK+F +AL   KT++WNGPMGVFEF KFA GT AIA  L+EL+ KG  TIIGGGDSVAAVE+ G+A+KMSHISTGGGASLELLEGK LPGV ALD+
Sbjct:  321 AKGVQLLLPSDVVVADKFDANANTQTVSVEAIPDGWMGLDIGPDSIKTFQDALADAKTVVWNGPMGVFEFPKFAVGTVAIANTLSELTPKGAITIIGGGDSVAAVEQAGVAEKMSHISTGGGASLELLEGKVLPGVAALDE 461          
BLAST of CF832952 vs. ExPASy Swiss-Prot
Match: PGK_SYNJA (Phosphoglycerate kinase OS=Synechococcus sp. (strain JA-3-3Ab) GN=pgk PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 3.351e-53
Identity = 99/142 (69.72%), Postives = 120/142 (84.51%), Query Frame = 1
Query:    1 SKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 426
            ++GV LLLP DVV+AD+F  DAN++ V   AIP+ WMGLD+GP+++K+F  AL   KT++WNGPMGVFEFD+FAAGTEAIA+ LA+L+  G  TIIGGGDSVAAVEKVGLADKM+HISTGGGASLELLEGK LPG+ AL +A
Sbjct:  271 ARGVELLLPVDVVVADRFDKDANAQTVSIHAIPEDWMGLDIGPESVKAFQAALQGCKTVVWNGPMGVFEFDRFAAGTEAIARTLADLTQAGAITIIGGGDSVAAVEKVGLADKMTHISTGGGASLELLEGKELPGIAALSEA 412          
The following BLAST results are available for this feature:
BLAST of CF832952 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_SYNSC4.229e-5676.06Phosphoglycerate kinase OS=Synechococcus sp. (stra... [more]
PGK_SYNP65.523e-5675.18Phosphoglycerate kinase OS=Synechococcus sp. (stra... [more]
PGK_SYNY37.213e-5675.00Phosphoglycerate kinase OS=Synechocystis sp. (stra... [more]
PGK_CYAP89.421e-5675.71Phosphoglycerate kinase OS=Cyanothece sp. (strain ... [more]
PGK_MICAN1.607e-5573.05Phosphoglycerate kinase OS=Microcystis aeruginosa ... [more]
PGK_PROM42.741e-5573.76Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_ACAM16.106e-5572.34Phosphoglycerate kinase OS=Acaryochloris marina (s... [more]
PGK_SYNP22.320e-5475.91Phosphoglycerate kinase OS=Synechococcus sp. (stra... [more]
PGKH_VOLCA3.031e-5472.34Phosphoglycerate kinase, chloroplastic OS=Volvox c... [more]
PGK_SYNJA3.351e-5369.72Phosphoglycerate kinase OS=Synechococcus sp. (stra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02L16_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02L16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832952 ID=CF832952; Name=CF832952; organism=Citrus sinensis; type=EST; length=637bp
TCTAAAGGGGTGTCTCTTCTGCTCCCTACTGATGTTGTTATTGCTGACAA
GTTTGCTGCTGATGCCAACAGCAAGGTGGTGCCAGCAACGGCAATTCCAG
ATGGTTGGATGGGCTTGGATGTTGGACCTGATGCCATCAAGTCATTCAGT
GAAGCTTTGGATACTACTAAAACCATCATCTGGAATGGACCTATGGGTGT
GTTTGAATTTGATAAATTTGCTGCTGGCACTGAGGCAATTGCCAAGAAGC
TTGCGGAGCTCAGCGGGAAGGGAGTGACCACAATCATTGGAGGAGGTGAC
TCAGTTGCAGCCGTAGAGAAGGTTGGTCTGGCTGACAAGATGAGCCATAT
CTCCACTGGAGGTGGAGCCAGCTTAGAGCTCCTTGAGGGCAAAACACTCC
CTGGTGTGCTTGCTCTTGATGATGCTTAAACCCAGTTCCTGGACTTTCCT
TTTTTAAATGTGCCATTTCCAGAGTTGTATGTGTGGCTGGTTGTCAGCCC
AGAGTGGATAAAAGTTAAACTTTATCATTAGAGTTGGTTTTGTAGATGCT
GTAAGAGTAAAAATAAATTCTTTCTCACAGGCATCAATGGTGATGCATTT
TTCTGGATTTGATCCCATTTTGGAACATTGTGATGGT
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