CF832952

Overview
NameCF832952
Unique NameCF832952
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length637
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2633 contig Csv1_Contig2633:112..748. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832952 vs. ExPASy Swiss-Prot
Match: PGK_YERPE (Phosphoglycerate kinase OS=Yersinia pestis GN=pgk PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.363e-28
Identity = 62/134 (46.27%), Postives = 91/134 (67.91%), Query Frame = 1
Query:   22 LPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 423
            +PTDV +A +F+  A + + PA  I D    LD+G ++ +  +E L   KTI+WNGP+GVFEF  F  GTE +A+ +AE       +I GGGD++AA++  G+AD++S+ISTGGGA LE +EGK LP V+ L++
Sbjct:  253 VPTDVRVATEFSETAAATLKPANEIKDDEQILDLGDESAERLAEILKNAKTILWNGPVGVFEFPNFRKGTEIVARAIAE---SEAFSIAGGGDTLAAIDLFGIADQISYISTGGGAFLEFVEGKKLPAVVMLEE 383          
BLAST of CF832952 vs. ExPASy Swiss-Prot
Match: PGK_YERPB (Phosphoglycerate kinase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=pgk PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.363e-28
Identity = 62/134 (46.27%), Postives = 91/134 (67.91%), Query Frame = 1
Query:   22 LPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 423
            +PTDV +A +F+  A + + PA  I D    LD+G ++ +  +E L   KTI+WNGP+GVFEF  F  GTE +A+ +AE       +I GGGD++AA++  G+AD++S+ISTGGGA LE +EGK LP V+ L++
Sbjct:  253 VPTDVRVATEFSETAAATLKPANEIKDDEQILDLGDESAERLAEILKNAKTILWNGPVGVFEFPNFRKGTEIVARAIAE---SEAFSIAGGGDTLAAIDLFGIADQISYISTGGGAFLEFVEGKKLPAVVMLEE 383          
BLAST of CF832952 vs. ExPASy Swiss-Prot
Match: PGK_YERPA (Phosphoglycerate kinase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=pgk PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.363e-28
Identity = 62/134 (46.27%), Postives = 91/134 (67.91%), Query Frame = 1
Query:   22 LPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 423
            +PTDV +A +F+  A + + PA  I D    LD+G ++ +  +E L   KTI+WNGP+GVFEF  F  GTE +A+ +AE       +I GGGD++AA++  G+AD++S+ISTGGGA LE +EGK LP V+ L++
Sbjct:  253 VPTDVRVATEFSETAAATLKPANEIKDDEQILDLGDESAERLAEILKNAKTILWNGPVGVFEFPNFRKGTEIVARAIAE---SEAFSIAGGGDTLAAIDLFGIADQISYISTGGGAFLEFVEGKKLPAVVMLEE 383          
BLAST of CF832952 vs. ExPASy Swiss-Prot
Match: PGK_YERP3 (Phosphoglycerate kinase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=pgk PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.363e-28
Identity = 62/134 (46.27%), Postives = 91/134 (67.91%), Query Frame = 1
Query:   22 LPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 423
            +PTDV +A +F+  A + + PA  I D    LD+G ++ +  +E L   KTI+WNGP+GVFEF  F  GTE +A+ +AE       +I GGGD++AA++  G+AD++S+ISTGGGA LE +EGK LP V+ L++
Sbjct:  253 VPTDVRVATEFSETAAATLKPANEIKDDEQILDLGDESAERLAEILKNAKTILWNGPVGVFEFPNFRKGTEIVARAIAE---SEAFSIAGGGDTLAAIDLFGIADQISYISTGGGAFLEFVEGKKLPAVVMLEE 383          
BLAST of CF832952 vs. ExPASy Swiss-Prot
Match: PGK_JANSC (Phosphoglycerate kinase OS=Jannaschia sp. (strain CCS1) GN=pgk PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.363e-28
Identity = 64/139 (46.04%), Postives = 90/139 (64.75%), Query Frame = 1
Query:   13 SLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKG-VTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 426
            +L+LP D+V+A +F A A + V    A P   M LD GP  +++ +   +T KT+IWNGP+G FE   F A T   A+  AE +  G + ++ GGGD+VAA+   G+AD+ ++IST GGA LE +EGKTLPGV AL+ A
Sbjct:  255 TLILPGDIVVAAEFKAGAANAVYDVDACPADQMILDAGPKTVETIAATFNTAKTVIWNGPLGAFEIAPFDAATVTAARAAAEETQAGKLISVAGGGDTVAALNHAGVADQFTYISTAGGAFLEWMEGKTLPGVAALEAA 393          
BLAST of CF832952 vs. ExPASy Swiss-Prot
Match: PGK_ZYMMO (Phosphoglycerate kinase OS=Zymomonas mobilis GN=pgk PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 8.311e-28
Identity = 62/139 (44.60%), Postives = 91/139 (65.47%), Query Frame = 1
Query:    7 GVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKG-VTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALD 420
            G  + LP+DVV+A +F A+   + +P + +    M LDVGP A+ + +E L  +KT++WNGP+G FE + F   T A+AK+ A L+  G + ++ GGGD+VAA+   G+A   S +ST GGA LE +EGK LPGV AL+
Sbjct:  258 GCKIHLPSDVVVAKEFKANPPIRTIPVSDVAADEMILDVGPKAVAALTEVLKASKTLVWNGPLGAFEIEPFDKATVALAKEAAALTKAGSLISVAGGGDTVAALNHAGVAKDFSFVSTAGGAFLEWMEGKELPGVKALE 396          
BLAST of CF832952 vs. ExPASy Swiss-Prot
Match: PGK_PSEA6 (Phosphoglycerate kinase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=pgk PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 8.311e-28
Identity = 62/138 (44.93%), Postives = 88/138 (63.77%), Query Frame = 1
Query:    7 GVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALD 420
            G ++ +P DVV   +F+  A + +   + + D  M  D+GP      +E +    TI+WNGP+GVFEFD+F  GT+AIA  +A+       +I GGGD++AAV+K G+ DK+S+ISTGGGA LE LEGK LP V  L+
Sbjct:  253 GGNIPVPVDVVTGKEFSEQAQATLKAVSDVADDDMIFDIGPQTATELAELIKNAGTIVWNGPVGVFEFDQFGEGTKAIAMAIAQ---SNAFSIAGGGDTLAAVDKYGIEDKISYISTGGGAFLEFLEGKALPAVTMLE 387          
BLAST of CF832952 vs. ExPASy Swiss-Prot
Match: PGK_LACLS (Phosphoglycerate kinase OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=pgk PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 8.311e-28
Identity = 66/136 (48.53%), Postives = 86/136 (63.24%), Query Frame = 1
Query:   16 LLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 423
            L+LP D  +A+ FA     K      IP G+MGLDV    I  ++  L+  KT++WNGP+GVFE   F AGT  + + + +  G  V +IIGGGDS AA   +G A+K S ISTGGGAS+ELLEGK LPG+ AL +
Sbjct:  264 LILPLDHKVANAFAGYTEVKETADQNIPAGFMGLDVASKTIADYNTQLEGAKTVVWNGPVGVFENPDFQAGTVGLMEAIVKQPG--VKSIIGGGDSAAAAINLGYAEKFSWISTGGGASMELLEGKVLPGLAALTE 397          
BLAST of CF832952 vs. ExPASy Swiss-Prot
Match: PGK_FRATN (Phosphoglycerate kinase OS=Francisella tularensis subsp. novicida (strain U112) GN=pgk PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 8.311e-28
Identity = 60/139 (43.17%), Postives = 94/139 (67.63%), Query Frame = 1
Query:    7 GVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 423
            GV++ +P DV +A +F+ +A + +   + +    M LD+GP++ K  +E L +  TI+WNGP+GVFEFD FA GT+A++  +A+       ++ GGGD++AA+EK G+ D++S+IST GGA LE LEGK LP +  L +
Sbjct:  253 GVNIPVPVDVRVAKEFSENAQAIIKKVSDVAADEMILDIGPESEKRIAELLKSANTILWNGPVGVFEFDNFAEGTKALSLSIAQ---SHAFSVAGGGDTIAAIEKFGIKDQVSYISTAGGAFLEFLEGKKLPAIEILKE 388          
BLAST of CF832952 vs. ExPASy Swiss-Prot
Match: PGK_AZOC5 (Phosphoglycerate kinase OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=pgk PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 8.311e-28
Identity = 65/140 (46.43%), Postives = 85/140 (60.71%), Query Frame = 1
Query:    1 SKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKG-VTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLAL 417
            S G  ++LP D V+   FAA A+ +VVP   + +  M LD GP  +    E L   KT++WNGP G FE   F A T A+AK +AE +  G + ++ GGGD+VAA+   G A   S++ST GGA LE LEGK LPGV AL
Sbjct:  255 SHGCEIVLPVDAVVTKTFAAHADHRVVPVDQVAEDEMILDAGPATVALVREKLKGAKTVVWNGPFGAFELPPFDAATVAVAKAVAEATKAGALLSVAGGGDTVAALNHAGAAGDFSYVSTAGGAFLEWLEGKQLPGVEAL 394          
The following BLAST results are available for this feature:
BLAST of CF832952 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_YERPE6.363e-2846.27Phosphoglycerate kinase OS=Yersinia pestis GN=pgk ... [more]
PGK_YERPB6.363e-2846.27Phosphoglycerate kinase OS=Yersinia pseudotubercul... [more]
PGK_YERPA6.363e-2846.27Phosphoglycerate kinase OS=Yersinia pestis bv. Ant... [more]
PGK_YERP36.363e-2846.27Phosphoglycerate kinase OS=Yersinia pseudotubercul... [more]
PGK_JANSC6.363e-2846.04Phosphoglycerate kinase OS=Jannaschia sp. (strain ... [more]
PGK_ZYMMO8.311e-2844.60Phosphoglycerate kinase OS=Zymomonas mobilis GN=pg... [more]
PGK_PSEA68.311e-2844.93Phosphoglycerate kinase OS=Pseudoalteromonas atlan... [more]
PGK_LACLS8.311e-2848.53Phosphoglycerate kinase OS=Lactococcus lactis subs... [more]
PGK_FRATN8.311e-2843.17Phosphoglycerate kinase OS=Francisella tularensis ... [more]
PGK_AZOC58.311e-2846.43Phosphoglycerate kinase OS=Azorhizobium caulinodan... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02L16_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02L16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832952 ID=CF832952; Name=CF832952; organism=Citrus sinensis; type=EST; length=637bp
TCTAAAGGGGTGTCTCTTCTGCTCCCTACTGATGTTGTTATTGCTGACAA
GTTTGCTGCTGATGCCAACAGCAAGGTGGTGCCAGCAACGGCAATTCCAG
ATGGTTGGATGGGCTTGGATGTTGGACCTGATGCCATCAAGTCATTCAGT
GAAGCTTTGGATACTACTAAAACCATCATCTGGAATGGACCTATGGGTGT
GTTTGAATTTGATAAATTTGCTGCTGGCACTGAGGCAATTGCCAAGAAGC
TTGCGGAGCTCAGCGGGAAGGGAGTGACCACAATCATTGGAGGAGGTGAC
TCAGTTGCAGCCGTAGAGAAGGTTGGTCTGGCTGACAAGATGAGCCATAT
CTCCACTGGAGGTGGAGCCAGCTTAGAGCTCCTTGAGGGCAAAACACTCC
CTGGTGTGCTTGCTCTTGATGATGCTTAAACCCAGTTCCTGGACTTTCCT
TTTTTAAATGTGCCATTTCCAGAGTTGTATGTGTGGCTGGTTGTCAGCCC
AGAGTGGATAAAAGTTAAACTTTATCATTAGAGTTGGTTTTGTAGATGCT
GTAAGAGTAAAAATAAATTCTTTCTCACAGGCATCAATGGTGATGCATTT
TTCTGGATTTGATCCCATTTTGGAACATTGTGATGGT
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