CF832952

Overview
NameCF832952
Unique NameCF832952
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length637
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832952 vs. ExPASy Swiss-Prot
Match: PGK_BACSK (Phosphoglycerate kinase OS=Bacillus clausii (strain KSM-K16) GN=pgk PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.907e-40
Identity = 81/140 (57.86%), Postives = 100/140 (71.43%), Query Frame = 1
Query:    4 KGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 423
            KGV   +P DV++AD F+ DAN K V  + IP  W  LD+GP   K++   L  +K +IWNGPMGVFE + FA GT+A+A  LAE S     ++IGGGDS AAVE+ GLADKMSHISTGGGASLE +EGK LPGV+AL +
Sbjct:  256 KGVKFYMPEDVIVADDFSDDANKKEVAISGIPADWEALDIGPKTRKTYEAVLKASKLVIWNGPMGVFELESFAGGTKAVANALAEAS--DTYSVIGGGDSAAAVEQFGLADKMSHISTGGGASLEFMEGKELPGVVALSE 393          
BLAST of CF832952 vs. ExPASy Swiss-Prot
Match: PGK_PROA2 (Phosphoglycerate kinase OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=pgk PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.253e-40
Identity = 80/141 (56.74%), Postives = 101/141 (71.63%), Query Frame = 1
Query:    1 SKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 423
            +K + +LLP DV+ A  F+ADA +  VP  +IP+  MGLD+GP  I ++S  +   +TI+WNGPMGVFE D FA GT AIA  LA+ + KG  +IIGGGDS AAV K GL   ++HISTGGGASLE LEGK LPG+ AL+D
Sbjct:  257 AKNIRMLLPEDVIAASAFSADAETATVPIDSIPETMMGLDIGPKTIDTYSREILKARTIVWNGPMGVFEIDAFATGTIAIAHALADATAKGAISIIGGGDSAAAVMKAGLESGITHISTGGGASLEFLEGKELPGIAALND 397          
BLAST of CF832952 vs. ExPASy Swiss-Prot
Match: PGK_PELPB (Phosphoglycerate kinase OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=pgk PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.253e-40
Identity = 78/141 (55.32%), Postives = 106/141 (75.18%), Query Frame = 1
Query:    1 SKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 423
            +KG+ LLLP DV++A + +A A+      TAIP+  +G+D+GP   + +   + + +T++WNGPMGVFE D FAAGT A+A+ +AE + +G TTIIGGGDS AAV K GLA++M+HISTGGGASLE LEGK LPG+ AL+D
Sbjct:  257 NKGIKLLLPVDVIVAPEISATADCHSEMITAIPEEMIGVDIGPLTAEIYRNEILSARTVLWNGPMGVFEIDNFAAGTMAVAQAMAEATAEGATTIIGGGDSAAAVAKAGLANEMTHISTGGGASLEFLEGKELPGIAALND 397          
BLAST of CF832952 vs. ExPASy Swiss-Prot
Match: PGK_CLOAB (Phosphoglycerate kinase OS=Clostridium acetobutylicum GN=pgk PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.253e-40
Identity = 78/141 (55.32%), Postives = 103/141 (73.05%), Query Frame = 1
Query:    1 SKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 423
            +KGV LLLP D ++  +F AD  +       IP+G+MGLD+GP   K +++A+   KT++WNGPMGVFEF+ FA GT+ +AK +AE      TT+IGGGDS AAV ++G  DKM+HISTGGGASLE LEGK LPG++AL+D
Sbjct:  259 AKGVKLLLPIDNIVGAEFKADTKAVTTEDANIPEGYMGLDIGPKTQKLYADAVKEAKTVVWNGPMGVFEFENFAKGTKDVAKAMAE---SDATTVIGGGDSAAAVNQLGFGDKMTHISTGGGASLEFLEGKELPGIVALND 396          
BLAST of CF832952 vs. ExPASy Swiss-Prot
Match: PGK_YEAST (Phosphoglycerate kinase OS=Saccharomyces cerevisiae GN=PGK1 PE=1 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 4.248e-40
Identity = 80/142 (56.34%), Postives = 103/142 (72.54%), Query Frame = 1
Query:    1 SKGVSLLLPTDVVIADKFAADANSKVVP-ATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 423
            +KGV ++LP D +IAD F+ADAN+K V     IP GW GLD GP++ K F+  +   KTI+WNGP GVFEF+KFAAGT+A+  ++ + S  G T IIGGGD+    +K G+ DK+SH+STGGGASLELLEGK LPGV  L +
Sbjct:  273 AKGVEVVLPVDFIIADAFSADANTKTVTDKEGIPAGWQGLDNGPESRKLFAATVAKAKTIVWNGPPGVFEFEKFAAGTKALLDEVVKSSAAGNTVIIGGGDTATVAKKYGVTDKISHVSTGGGASLELLEGKELPGVAFLSE 414          
BLAST of CF832952 vs. ExPASy Swiss-Prot
Match: PGK_MYCS2 (Phosphoglycerate kinase OS=Mycobacterium smegmatis GN=pgk PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.248e-40
Identity = 78/134 (58.21%), Postives = 100/134 (74.63%), Query Frame = 1
Query:   22 LPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGL-ADKMSHISTGGGASLELLEGKTLPGVLALD 420
            LP D+V+ADKFAADA ++ V A  IPDG MGLD+GP +++ F+  L   KT+ WNGPMGVFEF  FAAGT+ +A+ +   +GKG  +++GGGDS AAV ++GL  D  SHISTGGGASLE LEGK LPG+  L+
Sbjct:  274 LPVDIVVADKFAADAEAETVAADRIPDGKMGLDIGPGSVERFTALLSNAKTVFWNGPMGVFEFPAFAAGTKGVAEAIIGATGKGAFSVVGGGDSAAAVRRLGLPEDGFSHISTGGGASLEYLEGKELPGIQVLE 407          
BLAST of CF832952 vs. ExPASy Swiss-Prot
Match: PGK_CANGA (Phosphoglycerate kinase OS=Candida glabrata GN=PGK1 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.248e-40
Identity = 80/142 (56.34%), Postives = 104/142 (73.24%), Query Frame = 1
Query:    1 SKGVSLLLPTDVVIADKFAADANSKVVP-ATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 423
            +KGV ++LP D VIAD F+ADAN+K+V     IP GW GLD GP++ K F+  +   KTI+WNGP GVFEF+KFA+GT+A+  ++ + S  G T IIGGGD+    +K G+ DK+SH+STGGGASLELLEGK LPGV  L +
Sbjct:  273 AKGVEVVLPVDFVIADAFSADANTKIVSDKEGIPAGWQGLDNGPESRKLFAATIAKAKTIVWNGPPGVFEFEKFASGTKAMLDEVVKSSTSGNTVIIGGGDTATVAKKYGVTDKISHVSTGGGASLELLEGKELPGVAFLSE 414          
BLAST of CF832952 vs. ExPASy Swiss-Prot
Match: PGK_BACSU (Phosphoglycerate kinase OS=Bacillus subtilis GN=pgk PE=1 SV=3)

HSP 1 Score: 164.081 bits (414), Expect = 5.549e-40
Identity = 79/140 (56.43%), Postives = 104/140 (74.29%), Query Frame = 1
Query:    4 KGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 423
            KGV+  +P DV++AD F+ DAN K+VP + IP     +D+G    +++++ +  +K ++WNGPMGVFE D FA GT+A+A+ LAE   K   ++IGGGDS AAVEK GLADKMSHISTGGGASLE +EGK LPGV AL+D
Sbjct:  256 KGVNFYMPEDVLVADDFSNDANVKIVPISEIPSDLEAIDIGTKTRETYADVIKNSKLVVWNGPMGVFEIDLFAQGTKAVAEALAE--AKDTYSVIGGGDSAAAVEKFGLADKMSHISTGGGASLEFMEGKELPGVAALND 393          
BLAST of CF832952 vs. ExPASy Swiss-Prot
Match: PGK_BACME (Phosphoglycerate kinase OS=Bacillus megaterium GN=pgk PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 5.549e-40
Identity = 81/139 (58.27%), Postives = 102/139 (73.38%), Query Frame = 1
Query:    7 GVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 423
            GV+  +P DVV+AD F+ DAN +VV    IP  W GLD GP   + +++ +  +K +IWNGPMGVFE D FA GT+A+A+ LAE +     ++IGGGDS AAVEK  LADKMSHISTGGGASLE +EGK LPGV+AL+D
Sbjct:  257 GVNFYMPVDVVVADDFSNDANIQVVSIEDIPSDWEGLDAGPKTREIYADVIKNSKLVIWNGPMGVFELDAFANGTKAVAEALAEAT--DTYSVIGGGDSAAAVEKFNLADKMSHISTGGGASLEFMEGKELPGVVALND 393          
BLAST of CF832952 vs. ExPASy Swiss-Prot
Match: PGK_BEUC1 (Phosphoglycerate kinase OS=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) GN=pgk PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 7.247e-40
Identity = 80/140 (57.14%), Postives = 105/140 (75.00%), Query Frame = 1
Query:    7 GVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADK-MSHISTGGGASLELLEGKTLPGVLALDD 423
            GV+++LPTD+V A+ FAADA  +VV A AIP   +GLD+GP++ ++F+  +   KT++WNGPMGVFEFD FAAGT A+A+ L + +  G  TI+GGGDS AAV  +G  +   SHISTGGGASLE LEGKTLPG+  L+D
Sbjct:  260 GVTIVLPTDIVAAEAFAADAPHQVVAADAIPADSIGLDIGPESGEAFAAVIRGAKTVVWNGPMGVFEFDAFAAGTRAVAQGLTDATAAGAFTIVGGGDSAAAVRSLGFDEAGFSHISTGGGASLEFLEGKTLPGLAVLED 399          
The following BLAST results are available for this feature:
BLAST of CF832952 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_BACSK1.907e-4057.86Phosphoglycerate kinase OS=Bacillus clausii (strai... [more]
PGK_PROA23.253e-4056.74Phosphoglycerate kinase OS=Prosthecochloris aestua... [more]
PGK_PELPB3.253e-4055.32Phosphoglycerate kinase OS=Pelodictyon phaeoclathr... [more]
PGK_CLOAB3.253e-4055.32Phosphoglycerate kinase OS=Clostridium acetobutyli... [more]
PGK_YEAST4.248e-4056.34Phosphoglycerate kinase OS=Saccharomyces cerevisia... [more]
PGK_MYCS24.248e-4058.21Phosphoglycerate kinase OS=Mycobacterium smegmatis... [more]
PGK_CANGA4.248e-4056.34Phosphoglycerate kinase OS=Candida glabrata GN=PGK... [more]
PGK_BACSU5.549e-4056.43Phosphoglycerate kinase OS=Bacillus subtilis GN=pg... [more]
PGK_BACME5.549e-4058.27Phosphoglycerate kinase OS=Bacillus megaterium GN=... [more]
PGK_BEUC17.247e-4057.14Phosphoglycerate kinase OS=Beutenbergia cavernae (... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_02L16_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02L16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832952 ID=CF832952; Name=CF832952; organism=Citrus sinensis; type=EST; length=637bp
TCTAAAGGGGTGTCTCTTCTGCTCCCTACTGATGTTGTTATTGCTGACAA
GTTTGCTGCTGATGCCAACAGCAAGGTGGTGCCAGCAACGGCAATTCCAG
ATGGTTGGATGGGCTTGGATGTTGGACCTGATGCCATCAAGTCATTCAGT
GAAGCTTTGGATACTACTAAAACCATCATCTGGAATGGACCTATGGGTGT
GTTTGAATTTGATAAATTTGCTGCTGGCACTGAGGCAATTGCCAAGAAGC
TTGCGGAGCTCAGCGGGAAGGGAGTGACCACAATCATTGGAGGAGGTGAC
TCAGTTGCAGCCGTAGAGAAGGTTGGTCTGGCTGACAAGATGAGCCATAT
CTCCACTGGAGGTGGAGCCAGCTTAGAGCTCCTTGAGGGCAAAACACTCC
CTGGTGTGCTTGCTCTTGATGATGCTTAAACCCAGTTCCTGGACTTTCCT
TTTTTAAATGTGCCATTTCCAGAGTTGTATGTGTGGCTGGTTGTCAGCCC
AGAGTGGATAAAAGTTAAACTTTATCATTAGAGTTGGTTTTGTAGATGCT
GTAAGAGTAAAAATAAATTCTTTCTCACAGGCATCAATGGTGATGCATTT
TTCTGGATTTGATCCCATTTTGGAACATTGTGATGGT
back to top