CF832961

Overview
NameCF832961
Unique NameCF832961
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length543
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_RABIT (Triosephosphate isomerase OS=Oryctolagus cuniculus GN=TPI1 PE=1 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 4.053e-37
Identity = 73/95 (76.84%), Postives = 80/95 (84.21%), Query Frame = -2 
Query:  258 EKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 542
            + + +W  VVLAYEPVWAIGTGK ATP QAQEVH +LR WLK NVS  VA STRIIYGGSV GA CKELA+QPDVDGFLVGGASLKPEF+DII +
Sbjct:  152 DNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINA 246
[Close]
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_PONAB (Triosephosphate isomerase OS=Pongo abelii GN=TPI1 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 4.053e-37
Identity = 73/95 (76.84%), Postives = 80/95 (84.21%), Query Frame = -2 
Query:  258 EKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 542
            + + +W  VVLAYEPVWAIGTGK ATP QAQEVH +LR WLK NVS  VA STRIIYGGSV GA CKELA+QPDVDGFLVGGASLKPEF+DII +
Sbjct:  153 DNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINA 247
[Close]
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_PANTR (Triosephosphate isomerase OS=Pan troglodytes GN=TPI1 PE=2 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 4.053e-37
Identity = 73/95 (76.84%), Postives = 80/95 (84.21%), Query Frame = -2 
Query:  258 EKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 542
            + + +W  VVLAYEPVWAIGTGK ATP QAQEVH +LR WLK NVS  VA STRIIYGGSV GA CKELA+QPDVDGFLVGGASLKPEF+DII +
Sbjct:  153 DNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINA 247
[Close]
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_HUMAN (Triosephosphate isomerase OS=Homo sapiens GN=TPI1 PE=1 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 4.053e-37
Identity = 73/95 (76.84%), Postives = 80/95 (84.21%), Query Frame = -2 
Query:  258 EKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 542
            + + +W  VVLAYEPVWAIGTGK ATP QAQEVH +LR WLK NVS  VA STRIIYGGSV GA CKELA+QPDVDGFLVGGASLKPEF+DII +
Sbjct:  153 DNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINA 247
[Close]
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_GORGO (Triosephosphate isomerase OS=Gorilla gorilla gorilla GN=TPI1 PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 4.053e-37
Identity = 73/95 (76.84%), Postives = 80/95 (84.21%), Query Frame = -2 
Query:  258 EKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 542
            + + +W  VVLAYEPVWAIGTGK ATP QAQEVH +LR WLK NVS  VA STRIIYGGSV GA CKELA+QPDVDGFLVGGASLKPEF+DII +
Sbjct:  153 DNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINA 247
[Close]
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_CANFA (Triosephosphate isomerase OS=Canis familiaris GN=TPI1 PE=1 SV=3)

HSP 1 Score: 154.066 bits (388), Expect = 4.053e-37
Identity = 73/95 (76.84%), Postives = 80/95 (84.21%), Query Frame = -2 
Query:  258 EKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 542
            + + +W  VVLAYEPVWAIGTGK ATP QAQEVH +LR WLK NVS  VA STRIIYGGSV GA CKELA+QPDVDGFLVGGASLKPEF+DII +
Sbjct:  153 DNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINA 247
[Close]
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_XENTR (Triosephosphate isomerase OS=Xenopus tropicalis GN=tpi1 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.179e-36
Identity = 71/95 (74.74%), Postives = 79/95 (83.16%), Query Frame = -2 
Query:  258 EKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 542
            + + +W  VVLAYEPVWAIGTGK ATP QAQEVH +LR+WLK NVS +VA S RIIYGGSV G  CKEL AQPD+DGFLVGGASLKPEFIDII +
Sbjct:  152 DNVKDWSKVVLAYEPVWAIGTGKTATPEQAQEVHKKLREWLKTNVSEDVAKSVRIIYGGSVTGGTCKELGAQPDIDGFLVGGASLKPEFIDIINA 246
[Close]
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_MOUSE (Triosephosphate isomerase OS=Mus musculus GN=Tpi1 PE=1 SV=3)

HSP 1 Score: 152.525 bits (384), Expect = 1.179e-36
Identity = 72/95 (75.79%), Postives = 80/95 (84.21%), Query Frame = -2 
Query:  258 EKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 542
            + + +W  VVLAYEPVWAIGTGK ATP QAQEVH +LR WLK NV+  VA STRIIYGGSV GA CKELA+QPDVDGFLVGGASLKPEF+DII +
Sbjct:  153 DNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVNDGVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINA 247
[Close]
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_BOVIN (Triosephosphate isomerase OS=Bos taurus GN=TPI1 PE=2 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 1.540e-36
Identity = 72/95 (75.79%), Postives = 79/95 (83.16%), Query Frame = -2 
Query:  258 EKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 542
            + + +W  VVLAYEPVWAIGTGK ATP QAQEVH +LR WLK NVS  VA S RIIYGGSV GA CKELA+QPDVDGFLVGGASLKPEF+DII +
Sbjct:  153 DNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSARIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINA 247
[Close]
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_DROYA (Triosephosphate isomerase OS=Drosophila yakuba GN=Tpi PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 4.481e-36
Identity = 71/95 (74.74%), Postives = 81/95 (85.26%), Query Frame = -2 
Query:  258 EKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 542
            +KI +W NVV+AYEPVWAIGTGK ATP QAQEVHA LR+WL DN+S EV+AS RI YGGSV  AN KELA +PD+DGFLVGGASLKPEF+DII +
Sbjct:  151 QKIKDWKNVVVAYEPVWAIGTGKTATPDQAQEVHAFLRQWLSDNISKEVSASLRIQYGGSVTAANAKELAKKPDIDGFLVGGASLKPEFVDIINA 245
The following BLAST results are available for this feature:
BLAST of CF832961 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_RABIT4.053e-3776.84Triosephosphate isomerase OS=Oryctolagus cuniculus... [more]
TPIS_PONAB4.053e-3776.84Triosephosphate isomerase OS=Pongo abelii GN=TPI1 ... [more]
TPIS_PANTR4.053e-3776.84Triosephosphate isomerase OS=Pan troglodytes GN=TP... [more]
TPIS_HUMAN4.053e-3776.84Triosephosphate isomerase OS=Homo sapiens GN=TPI1 ... [more]
TPIS_GORGO4.053e-3776.84Triosephosphate isomerase OS=Gorilla gorilla goril... [more]
TPIS_CANFA4.053e-3776.84Triosephosphate isomerase OS=Canis familiaris GN=T... [more]
TPIS_XENTR1.179e-3674.74Triosephosphate isomerase OS=Xenopus tropicalis GN... [more]
TPIS_MOUSE1.179e-3675.79Triosephosphate isomerase OS=Mus musculus GN=Tpi1 ... [more]
TPIS_BOVIN1.540e-3675.79Triosephosphate isomerase OS=Bos taurus GN=TPI1 PE... [more]
TPIS_DROYA4.481e-3674.74Triosephosphate isomerase OS=Drosophila yakuba GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02L22_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02L22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832961 ID=CF832961; Name=CF832961; organism=Citrus sinensis; type=EST; length=543bp
TTTTTTTTTTTTTTTTGAAGAAGGGAAAAGCAACCATTTATTAAATCCAC
AATGATAAGTTTCAAATCCCCACTGAAATAGGAAAGAGATTCTTAAGAAT
TCTGAAGATTTAACTTATTATACTGGAAAGGCGTTGGTAACACTTAACAG
ACCACAAAAATTACAACGCTAGTTTCCAGAACGCATAACAGAGAAAACTG
CAGGCATCAGCAAGCCGAGTAGCTTGGTCTTTAACTTCAATTCTTCTTCA
CTGTGGCAGACTTGATAATATCGATGAACTCCGGCTTTAGAGAAGCTCCA
CCAACCAAAAATCCATCCACATCAGGTTGTGCTGCCAATTCTTTGCAATT
TGCTCCATTTACAGAACCTCCGTAGATGATTCTAGTTGATGCTGCAACTT
CAGCACTGACATTGTCTTTAAGCCATTTCCTCAGTTCAGCATGGACTTCC
TGAGCCTGAGCAGGGGTTGCAACCTTCCCGGTACCAATGGCCCAAACTGG
CTCATAAGCCAACACAACATTGTCCCAGTTGGATATTTTTTCT
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