CF832961

Overview
NameCF832961
Unique NameCF832961
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length543
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_ECOL5 (Triosephosphate isomerase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=tpiA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.072e-21
Identity = 55/96 (57.29%), Postives = 66/96 (68.75%), Query Frame = -2 
Query:  243 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 527
            ++  V+AYEPVWAIGTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:  159 FEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK 253
[Close]
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_ECOK1 (Triosephosphate isomerase OS=Escherichia coli O1:K1 / APEC GN=tpiA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.072e-21
Identity = 55/96 (57.29%), Postives = 66/96 (68.75%), Query Frame = -2 
Query:  243 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 527
            ++  V+AYEPVWAIGTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:  159 FEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK 253
[Close]
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_ECOHS (Triosephosphate isomerase OS=Escherichia coli O9:H4 (strain HS) GN=tpiA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.072e-21
Identity = 55/96 (57.29%), Postives = 66/96 (68.75%), Query Frame = -2 
Query:  243 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 527
            ++  V+AYEPVWAIGTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:  159 FEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK 253
[Close]
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_ECODH (Triosephosphate isomerase OS=Escherichia coli (strain K12 / DH10B) GN=tpiA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.072e-21
Identity = 55/96 (57.29%), Postives = 66/96 (68.75%), Query Frame = -2 
Query:  243 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 527
            ++  V+AYEPVWAIGTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:  159 FEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK 253
[Close]
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_ECO8A (Triosephosphate isomerase OS=Escherichia coli O8 (strain IAI1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.072e-21
Identity = 55/96 (57.29%), Postives = 66/96 (68.75%), Query Frame = -2 
Query:  243 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 527
            ++  V+AYEPVWAIGTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:  159 FEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK 253
[Close]
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_ECO7I (Triosephosphate isomerase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=tpiA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.072e-21
Identity = 55/96 (57.29%), Postives = 66/96 (68.75%), Query Frame = -2 
Query:  243 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 527
            ++  V+AYEPVWAIGTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:  159 FEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK 253
[Close]
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_ECO5E (Triosephosphate isomerase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=tpiA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.072e-21
Identity = 55/96 (57.29%), Postives = 66/96 (68.75%), Query Frame = -2 
Query:  243 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 527
            ++  V+AYEPVWAIGTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:  159 FEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK 253
[Close]
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_ECO57 (Triosephosphate isomerase OS=Escherichia coli O157:H7 GN=tpiA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.072e-21
Identity = 55/96 (57.29%), Postives = 66/96 (68.75%), Query Frame = -2 
Query:  243 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 527
            ++  V+AYEPVWAIGTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:  159 FEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK 253
[Close]
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_ECO45 (Triosephosphate isomerase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=tpiA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.072e-21
Identity = 55/96 (57.29%), Postives = 66/96 (68.75%), Query Frame = -2 
Query:  243 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 527
            ++  V+AYEPVWAIGTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:  159 FEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK 253
[Close]
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_ECO24 (Triosephosphate isomerase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=tpiA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.072e-21
Identity = 55/96 (57.29%), Postives = 66/96 (68.75%), Query Frame = -2 
Query:  243 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 527
            ++  V+AYEPVWAIGTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:  159 FEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK 253
The following BLAST results are available for this feature:
BLAST of CF832961 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_ECOL54.072e-2157.29Triosephosphate isomerase OS=Escherichia coli O6:K... [more]
TPIS_ECOK14.072e-2157.29Triosephosphate isomerase OS=Escherichia coli O1:K... [more]
TPIS_ECOHS4.072e-2157.29Triosephosphate isomerase OS=Escherichia coli O9:H... [more]
TPIS_ECODH4.072e-2157.29Triosephosphate isomerase OS=Escherichia coli (str... [more]
TPIS_ECO8A4.072e-2157.29Triosephosphate isomerase OS=Escherichia coli O8 (... [more]
TPIS_ECO7I4.072e-2157.29Triosephosphate isomerase OS=Escherichia coli O7:K... [more]
TPIS_ECO5E4.072e-2157.29Triosephosphate isomerase OS=Escherichia coli O157... [more]
TPIS_ECO574.072e-2157.29Triosephosphate isomerase OS=Escherichia coli O157... [more]
TPIS_ECO454.072e-2157.29Triosephosphate isomerase OS=Escherichia coli O45:... [more]
TPIS_ECO244.072e-2157.29Triosephosphate isomerase OS=Escherichia coli O139... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02L22_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02L22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832961 ID=CF832961; Name=CF832961; organism=Citrus sinensis; type=EST; length=543bp
TTTTTTTTTTTTTTTTGAAGAAGGGAAAAGCAACCATTTATTAAATCCAC
AATGATAAGTTTCAAATCCCCACTGAAATAGGAAAGAGATTCTTAAGAAT
TCTGAAGATTTAACTTATTATACTGGAAAGGCGTTGGTAACACTTAACAG
ACCACAAAAATTACAACGCTAGTTTCCAGAACGCATAACAGAGAAAACTG
CAGGCATCAGCAAGCCGAGTAGCTTGGTCTTTAACTTCAATTCTTCTTCA
CTGTGGCAGACTTGATAATATCGATGAACTCCGGCTTTAGAGAAGCTCCA
CCAACCAAAAATCCATCCACATCAGGTTGTGCTGCCAATTCTTTGCAATT
TGCTCCATTTACAGAACCTCCGTAGATGATTCTAGTTGATGCTGCAACTT
CAGCACTGACATTGTCTTTAAGCCATTTCCTCAGTTCAGCATGGACTTCC
TGAGCCTGAGCAGGGGTTGCAACCTTCCCGGTACCAATGGCCCAAACTGG
CTCATAAGCCAACACAACATTGTCCCAGTTGGATATTTTTTCT
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