CF832961

Overview
NameCF832961
Unique NameCF832961
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length543
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_YERPN (Triosephosphate isomerase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=tpiA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 9.071e-21
Identity = 53/100 (53.00%), Postives = 67/100 (67.00%), Query Frame = -2 
Query:  246 ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVS---AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVK 536
            +  ++  V+AYEP+WAIGTGK ATPAQAQ VH    K+++D+++   A VAA   I YGGSVN  N  EL  QPD+DG LVGGASLK +   +I  A  K
Sbjct:  156 VKAFEGAVIAYEPIWAIGTGKSATPAQAQAVH----KFIRDHIAKQDAAVAAQVIIQYGGSVNDKNAAELFTQPDIDGALVGGASLKADAFAVIVKAAAK 251
[Close]
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_YERPG (Triosephosphate isomerase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=tpiA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 9.071e-21
Identity = 53/100 (53.00%), Postives = 67/100 (67.00%), Query Frame = -2 
Query:  246 ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVS---AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVK 536
            +  ++  V+AYEP+WAIGTGK ATPAQAQ VH    K+++D+++   A VAA   I YGGSVN  N  EL  QPD+DG LVGGASLK +   +I  A  K
Sbjct:  156 VKAFEGAVIAYEPIWAIGTGKSATPAQAQAVH----KFIRDHIAKQDAAVAAQVIIQYGGSVNDKNAAELFTQPDIDGALVGGASLKADAFAVIVKAAAK 251
[Close]
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_YERPE (Triosephosphate isomerase OS=Yersinia pestis GN=tpiA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 9.071e-21
Identity = 53/100 (53.00%), Postives = 67/100 (67.00%), Query Frame = -2 
Query:  246 ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVS---AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVK 536
            +  ++  V+AYEP+WAIGTGK ATPAQAQ VH    K+++D+++   A VAA   I YGGSVN  N  EL  QPD+DG LVGGASLK +   +I  A  K
Sbjct:  156 VKAFEGAVIAYEPIWAIGTGKSATPAQAQAVH----KFIRDHIAKQDAAVAAQVIIQYGGSVNDKNAAELFTQPDIDGALVGGASLKADAFAVIVKAAAK 251
[Close]
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_YERPB (Triosephosphate isomerase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=tpiA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 9.071e-21
Identity = 53/100 (53.00%), Postives = 67/100 (67.00%), Query Frame = -2 
Query:  246 ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVS---AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVK 536
            +  ++  V+AYEP+WAIGTGK ATPAQAQ VH    K+++D+++   A VAA   I YGGSVN  N  EL  QPD+DG LVGGASLK +   +I  A  K
Sbjct:  156 VKAFEGAVIAYEPIWAIGTGKSATPAQAQAVH----KFIRDHIAKQDAAVAAQVIIQYGGSVNDKNAAELFTQPDIDGALVGGASLKADAFAVIVKAAAK 251
[Close]
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_YERPA (Triosephosphate isomerase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=tpiA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 9.071e-21
Identity = 53/100 (53.00%), Postives = 67/100 (67.00%), Query Frame = -2 
Query:  246 ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVS---AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVK 536
            +  ++  V+AYEP+WAIGTGK ATPAQAQ VH    K+++D+++   A VAA   I YGGSVN  N  EL  QPD+DG LVGGASLK +   +I  A  K
Sbjct:  156 VKAFEGAVIAYEPIWAIGTGKSATPAQAQAVH----KFIRDHIAKQDAAVAAQVIIQYGGSVNDKNAAELFTQPDIDGALVGGASLKADAFAVIVKAAAK 251
[Close]
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_YERP3 (Triosephosphate isomerase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=tpiA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 9.071e-21
Identity = 53/100 (53.00%), Postives = 67/100 (67.00%), Query Frame = -2 
Query:  246 ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVS---AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVK 536
            +  ++  V+AYEP+WAIGTGK ATPAQAQ VH    K+++D+++   A VAA   I YGGSVN  N  EL  QPD+DG LVGGASLK +   +I  A  K
Sbjct:  156 VKAFEGAVIAYEPIWAIGTGKSATPAQAQAVH----KFIRDHIAKQDAAVAAQVIIQYGGSVNDKNAAELFTQPDIDGALVGGASLKADAFAVIVKAAAK 251
[Close]
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_SHEWM (Triosephosphate isomerase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=tpiA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 9.071e-21
Identity = 51/92 (55.43%), Postives = 66/92 (71.74%), Query Frame = -2 
Query:  255 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KPEFIDIIKSA 527
            +DN ++AYEP+WA+GTGK ATP QAQEVHA +RK L + VS  +  + RI+YGGSV  +N  +L AQPDVDG L+GG SL   EF+ +   A
Sbjct:  167 FDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRLSE-VSPFIGENIRILYGGSVTPSNAADLFAQPDVDGGLIGGVSLNSTEFLSLCSIA 257
[Close]
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_HAES1 (Triosephosphate isomerase OS=Haemophilus somnus (strain 129Pt) GN=tpiA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 9.071e-21
Identity = 56/100 (56.00%), Postives = 66/100 (66.00%), Query Frame = -2 
Query:  240 ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKKN 536
            +  ++  V+AYEP+WAIGTGK ATPAQAQ VHA +R  +     A VA    I YGGSVN AN  EL  QPD+DG LVGGASLK   F  I+K+A   KN
Sbjct:  157 VEAFNGAVIAYEPIWAIGTGKSATPAQAQAVHAFIRGHIAKQSQA-VAERVIIQYGGSVNDANAAELFTQPDIDGALVGGASLKASAFAVIVKAAAKAKN 255
[Close]
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_ENTCL (Triosephosphate isomerase OS=Enterobacter cloacae GN=tpiA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 9.071e-21
Identity = 55/99 (55.56%), Postives = 70/99 (70.71%), Query Frame = -2 
Query:  243 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVS---AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 527
            ++  V+AYEPVWAIGTGK ATPAQAQ VH    K+++D+++   A+VA    I YGGSVN +N  EL  QPD+DG LVGGASLK + F  I+K+A   K
Sbjct:  159 FEGAVIAYEPVWAIGTGKSATPAQAQAVH----KFIRDHIAKADAKVAEQVIIQYGGSVNASNAAELFTQPDIDGALVGGASLKADAFAVIVKAAEAAK 253
[Close]
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_YERE8 (Triosephosphate isomerase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=tpiA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.185e-20
Identity = 54/99 (54.55%), Postives = 69/99 (69.70%), Query Frame = -2 
Query:  243 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVS---AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 527
            ++  V+AYEP+WAIGTGK ATPAQAQ VH    K+++D+++   A +AA   I YGGSVN  N  EL  QPD+DG LVGGASLK + F  I+K+A   K
Sbjct:  159 FEGAVIAYEPIWAIGTGKSATPAQAQAVH----KFIRDHIAKQDAAIAAQVIIQYGGSVNDKNAAELFTQPDIDGALVGGASLKADAFAVIVKAAAAAK 253
The following BLAST results are available for this feature:
BLAST of CF832961 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_YERPN9.071e-2153.00Triosephosphate isomerase OS=Yersinia pestis bv. A... [more]
TPIS_YERPG9.071e-2153.00Triosephosphate isomerase OS=Yersinia pestis bv. A... [more]
TPIS_YERPE9.071e-2153.00Triosephosphate isomerase OS=Yersinia pestis GN=tp... [more]
TPIS_YERPB9.071e-2153.00Triosephosphate isomerase OS=Yersinia pseudotuberc... [more]
TPIS_YERPA9.071e-2153.00Triosephosphate isomerase OS=Yersinia pestis bv. A... [more]
TPIS_YERP39.071e-2153.00Triosephosphate isomerase OS=Yersinia pseudotuberc... [more]
TPIS_SHEWM9.071e-2155.43Triosephosphate isomerase OS=Shewanella woodyi (st... [more]
TPIS_HAES19.071e-2156.00Triosephosphate isomerase OS=Haemophilus somnus (s... [more]
TPIS_ENTCL9.071e-2155.56Triosephosphate isomerase OS=Enterobacter cloacae ... [more]
TPIS_YERE81.185e-2054.55Triosephosphate isomerase OS=Yersinia enterocoliti... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02L22_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02L22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832961 ID=CF832961; Name=CF832961; organism=Citrus sinensis; type=EST; length=543bp
TTTTTTTTTTTTTTTTGAAGAAGGGAAAAGCAACCATTTATTAAATCCAC
AATGATAAGTTTCAAATCCCCACTGAAATAGGAAAGAGATTCTTAAGAAT
TCTGAAGATTTAACTTATTATACTGGAAAGGCGTTGGTAACACTTAACAG
ACCACAAAAATTACAACGCTAGTTTCCAGAACGCATAACAGAGAAAACTG
CAGGCATCAGCAAGCCGAGTAGCTTGGTCTTTAACTTCAATTCTTCTTCA
CTGTGGCAGACTTGATAATATCGATGAACTCCGGCTTTAGAGAAGCTCCA
CCAACCAAAAATCCATCCACATCAGGTTGTGCTGCCAATTCTTTGCAATT
TGCTCCATTTACAGAACCTCCGTAGATGATTCTAGTTGATGCTGCAACTT
CAGCACTGACATTGTCTTTAAGCCATTTCCTCAGTTCAGCATGGACTTCC
TGAGCCTGAGCAGGGGTTGCAACCTTCCCGGTACCAATGGCCCAAACTGG
CTCATAAGCCAACACAACATTGTCCCAGTTGGATATTTTTTCT
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