CF832961

Overview
NameCF832961
Unique NameCF832961
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length543
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_SHEPW (Triosephosphate isomerase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=tpiA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.185e-20
Identity = 50/88 (56.82%), Postives = 65/88 (73.86%), Query Frame = -2
Query:  267 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDI 527
            +DN ++AYEP+WA+GTGK ATP QAQEVHA +RK L + VS  +  + RI+YGGSV  +N  +L AQPDVDG L+GG SL   EF+ +
Sbjct:  167 FDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRLSE-VSPFIGENIRILYGGSVTPSNAADLFAQPDVDGGLIGGVSLNATEFLSL 253          
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_SHEPA (Triosephosphate isomerase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.185e-20
Identity = 50/88 (56.82%), Postives = 65/88 (73.86%), Query Frame = -2
Query:  267 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDI 527
            +DN ++AYEP+WA+GTGK ATP QAQEVHA +RK L + VS  +  + RI+YGGSV  +N  +L AQPDVDG L+GG SL   EF+ +
Sbjct:  167 FDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRLSE-VSPFIGENIRILYGGSVTPSNAADLFAQPDVDGGLIGGVSLNATEFLSL 253          
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_SHEHH (Triosephosphate isomerase OS=Shewanella halifaxensis (strain HAW-EB4) GN=tpiA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.185e-20
Identity = 50/88 (56.82%), Postives = 65/88 (73.86%), Query Frame = -2
Query:  267 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDI 527
            +DN ++AYEP+WA+GTGK ATP QAQEVHA +RK L + VS  +  + RI+YGGSV  +N  +L AQPDVDG L+GG SL   EF+ +
Sbjct:  167 FDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRLSE-VSPFIGENIRILYGGSVTPSNAADLFAQPDVDGGLIGGVSLNATEFLSL 253          
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_RHOBA (Triosephosphate isomerase OS=Rhodopirellula baltica GN=tpiA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.185e-20
Identity = 52/90 (57.78%), Postives = 65/90 (72.22%), Query Frame = -2
Query:  255 NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 521
            N+V+AYEPVWAIGTGK A+  QA+ VHA +R+ L    S EVA   RI YGGSV   N +EL +QP++DG LVGG+SLK  +F  IIK+A
Sbjct:  162 NIVIAYEPVWAIGTGKTASKEQAEAVHAFIRELLGKMFSTEVAEQIRIQYGGSVKPGNAEELLSQPNIDGALVGGSSLKVDDFAGIIKAA 251          
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_LACH4 (Triosephosphate isomerase OS=Lactobacillus helveticus (strain DPC 4571) GN=tpiA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.185e-20
Identity = 48/81 (59.26%), Postives = 62/81 (76.54%), Query Frame = -2
Query:  279 NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 521
            N+V+AYEP+WAIGTGK A+  QA+E+   +R+ +KD  + E A + RI YGGSV  AN KEL ++PD+DG LVGGASLKPE
Sbjct:  162 NLVIAYEPIWAIGTGKTASSDQAEEMCKTIRETVKDLYNEETAENVRIQYGGSVKPANVKELMSKPDIDGGLVGGASLKPE 242          
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_HALHL (Triosephosphate isomerase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.185e-20
Identity = 48/94 (51.06%), Postives = 66/94 (70.21%), Query Frame = -2
Query:  255 SNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 533
            + +   V+AYEPVWAIGTG+ ATP QAQ VHA +R+ +++  + E+A    I+YGGS+   N  EL AQPD+DG L+GGASL P+ F+ I  +A
Sbjct:  153 ATFQGAVIAYEPVWAIGTGRTATPEQAQAVHAFIRQRVQERDAGEIADQLPILYGGSMKADNAAELLAQPDIDGGLIGGASLDPDSFLSIYNAA 246          
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_HAES2 (Triosephosphate isomerase OS=Haemophilus somnus (strain 2336) GN=tpiA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.185e-20
Identity = 55/100 (55.00%), Postives = 66/100 (66.00%), Query Frame = -2
Query:  240 ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKKN 536
            +  ++  V+AYEP+WAIGTGK ATPAQAQ VHA +R  +     A VA    I YGGS+N AN  EL  QPD+DG LVGGASLK   F  I+K+A   KN
Sbjct:  157 VEAFNGAVIAYEPIWAIGTGKSATPAQAQAVHAFIRGHIAKQSQA-VAERVIIQYGGSINDANAAELFTQPDIDGALVGGASLKASAFAVIVKAAAKAKN 255          
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_HAEDU (Triosephosphate isomerase OS=Haemophilus ducreyi GN=tpiA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.185e-20
Identity = 54/99 (54.55%), Postives = 68/99 (68.69%), Query Frame = -2
Query:  243 ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSATVKK 536
            +  ++  V+AYEP+WAIGTGK ATPAQAQ VHA +R+ + +  S  VA    I YGGSVN  N  EL +QPD+DG LVGGASLK   F +I+K+A   K
Sbjct:  158 VEAFNQAVIAYEPIWAIGTGKSATPAQAQAVHAFIRQHIAEK-SQAVADQLIIQYGGSVNDTNAAELFSQPDIDGALVGGASLKATAFAEIVKAAEKAK 255          
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_FLAPJ (Triosephosphate isomerase OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=tpiA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.185e-20
Identity = 45/90 (50.00%), Postives = 65/90 (72.22%), Query Frame = -2
Query:  264 SNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDII 533
            S W N++LAYEPVWAIGTG+ A+P QAQE+H  +R+ ++    +++A    I+YGGSV   N KE+ ++PDVDG L+GGA+LK +   +I
Sbjct:  157 SAWANIILAYEPVWAIGTGETASPEQAQEMHEFIRETVRKVFGSDIAEDVSILYGGSVKPDNAKEIFSKPDVDGGLIGGAALKADDFVVI 246          
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_ACTPJ (Triosephosphate isomerase OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=tpiA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.185e-20
Identity = 56/99 (56.57%), Postives = 66/99 (66.67%), Query Frame = -2
Query:  243 ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSATVKK 536
            +  ++  V+AYEP+WAIGTGK ATPAQAQ VHA +R  +     A VA    I YGGSVN AN  EL  QPD+DG LVGGASLK P F  I+K+A   K
Sbjct:  158 VEAFNGAVIAYEPIWAIGTGKSATPAQAQAVHAFIRGHIAAKSQA-VADQVIIQYGGSVNDANAAELFTQPDIDGALVGGASLKAPAFAVIVKAAEKAK 255          
The following BLAST results are available for this feature:
BLAST of CF832961 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_SHEPW1.185e-2056.82Triosephosphate isomerase OS=Shewanella piezotoler... [more]
TPIS_SHEPA1.185e-2056.82Triosephosphate isomerase OS=Shewanella pealeana (... [more]
TPIS_SHEHH1.185e-2056.82Triosephosphate isomerase OS=Shewanella halifaxens... [more]
TPIS_RHOBA1.185e-2057.78Triosephosphate isomerase OS=Rhodopirellula baltic... [more]
TPIS_LACH41.185e-2059.26Triosephosphate isomerase OS=Lactobacillus helveti... [more]
TPIS_HALHL1.185e-2051.06Triosephosphate isomerase OS=Halorhodospira haloph... [more]
TPIS_HAES21.185e-2055.00Triosephosphate isomerase OS=Haemophilus somnus (s... [more]
TPIS_HAEDU1.185e-2054.55Triosephosphate isomerase OS=Haemophilus ducreyi G... [more]
TPIS_FLAPJ1.185e-2050.00Triosephosphate isomerase OS=Flavobacterium psychr... [more]
TPIS_ACTPJ1.185e-2056.57Triosephosphate isomerase OS=Actinobacillus pleuro... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02L22_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02L22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832961 ID=CF832961; Name=CF832961; organism=Citrus sinensis; type=EST; length=543bp
TTTTTTTTTTTTTTTTGAAGAAGGGAAAAGCAACCATTTATTAAATCCAC
AATGATAAGTTTCAAATCCCCACTGAAATAGGAAAGAGATTCTTAAGAAT
TCTGAAGATTTAACTTATTATACTGGAAAGGCGTTGGTAACACTTAACAG
ACCACAAAAATTACAACGCTAGTTTCCAGAACGCATAACAGAGAAAACTG
CAGGCATCAGCAAGCCGAGTAGCTTGGTCTTTAACTTCAATTCTTCTTCA
CTGTGGCAGACTTGATAATATCGATGAACTCCGGCTTTAGAGAAGCTCCA
CCAACCAAAAATCCATCCACATCAGGTTGTGCTGCCAATTCTTTGCAATT
TGCTCCATTTACAGAACCTCCGTAGATGATTCTAGTTGATGCTGCAACTT
CAGCACTGACATTGTCTTTAAGCCATTTCCTCAGTTCAGCATGGACTTCC
TGAGCCTGAGCAGGGGTTGCAACCTTCCCGGTACCAATGGCCCAAACTGG
CTCATAAGCCAACACAACATTGTCCCAGTTGGATATTTTTTCT
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