CF832961

Overview
NameCF832961
Unique NameCF832961
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length543
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2749 contig Csv1_Contig2749:163..705. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_SCHPO (Triosephosphate isomerase OS=Schizosaccharomyces pombe GN=tpi1 PE=1 SV=4)

HSP 1 Score: 138.658 bits (348), Expect = 1.762e-32
Identity = 62/93 (66.67%), Postives = 73/93 (78.49%), Query Frame = -2
Query:  264 EKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDII 542
            +K+ NW  +V+AYEPVWAIGTGK ATP QAQEVHAE+RKW  + + A VA   R+IYGGSVNG NCKE     D+DGFLVGGASLKPEF +I+
Sbjct:  152 DKVQNWSKIVIAYEPVWAIGTGKTATPEQAQEVHAEIRKWATNKLGASVAEGLRVIYGGSVNGGNCKEFLKFHDIDGFLVGGASLKPEFHNIV 244          
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_SCHJA (Triosephosphate isomerase OS=Schistosoma japonicum GN=TPI PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.762e-32
Identity = 68/95 (71.58%), Postives = 73/95 (76.84%), Query Frame = -2
Query:  258 EKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 542
            + I  W  VV+AYEPVWAIGTGKVA+P QAQEVH  LRKW K N  + V    RIIYGGSV  ANCKELA Q DVDGFLVGGASLKPEFIDI K+
Sbjct:  156 KSIDEWKRVVVAYEPVWAIGTGKVASPGQAQEVHNFLRKWFKTNTPSGVDQQIRIIYGGSVTAANCKELAQQHDVDGFLVGGASLKPEFIDICKA 250          
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_COPC7 (Triosephosphate isomerase OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=TPI PE=3 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 1.762e-32
Identity = 64/94 (68.09%), Postives = 79/94 (84.04%), Query Frame = -2
Query:  258 KISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 539
            K  +W N+V+AYEPVWAIGTGKVAT +QAQE H ++RK+L   VS +VA+ TR+IYGGSVN AN K+LA+Q D+DGFLVGGASLKPEF+DII +
Sbjct:  155 KEEDWSNIVIAYEPVWAIGTGKVATTSQAQETHVDVRKYLATAVSPKVASETRVIYGGSVNAANSKDLASQQDIDGFLVGGASLKPEFVDIINA 248          
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_ASPOR (Triosephosphate isomerase OS=Aspergillus oryzae GN=tpiA PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 6.696e-32
Identity = 64/90 (71.11%), Postives = 74/90 (82.22%), Query Frame = -2
Query:  258 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 527
            W  VV+AYEPVWAIGTGKVAT  QAQEVHA +RKWL D +S E + +TRIIYGGSV+  NC+ELA + DVDGFLVGGASLKP F+DII +
Sbjct:  160 WSKVVIAYEPVWAIGTGKVATTQQAQEVHAAIRKWLADAISPEASENTRIIYGGSVSEKNCRELAQERDVDGFLVGGASLKPAFVDIINA 249          
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_LEIME (Triosephosphate isomerase OS=Leishmania mexicana PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 8.745e-32
Identity = 64/88 (72.73%), Postives = 73/88 (82.95%), Query Frame = -2
Query:  264 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDII 527
            W+ VVLAYEPVWAIGTGKVATP QAQEVH  LRKW+ +N+  +VAA  RI+YGGSVN AN   L A+PD++GFLVGGASLKPEF DII
Sbjct:  160 WNQVVLAYEPVWAIGTGKVATPEQAQEVHLLLRKWVSENIGTDVAAKLRILYGGSVNAANAATLYAKPDINGFLVGGASLKPEFRDII 247          
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPISL_HUMAN (Putative triosephosphate isomerase-like protein LOC286016 OS=Homo sapiens PE=1 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 4.340e-31
Identity = 62/95 (65.26%), Postives = 73/95 (76.84%), Query Frame = -2
Query:  258 EKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 542
            + + +W  V+LAY+PVWA GTGK ATP QAQEVH +LR WLK N+S  VA ST IIYGGSV  A CKELA+QPDV  FL+ G SLKPEF+DII +
Sbjct:  134 DNVKDWSKVILAYDPVWATGTGKTATPQQAQEVHKKLRGWLKSNISDAVAQSTGIIYGGSVTKATCKELASQPDVAAFLMSGVSLKPEFVDIINA 228          
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_TRYBB (Triosephosphate isomerase, glycosomal OS=Trypanosoma brucei brucei PE=1 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 7.403e-31
Identity = 62/94 (65.96%), Postives = 74/94 (78.72%), Query Frame = -2
Query:  258 KISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 539
            K ++W  VV+AYEPVWAIGTGKVATP QAQE HA +R W+   + A+VA   RI+YGGSVNG N + L  Q DV+GFLVGGASLKPEF+DIIK+
Sbjct:  155 KKADWAKVVIAYEPVWAIGTGKVATPQQAQEAHALIRSWVSSKIGADVAGELRILYGGSVNGKNARTLYQQRDVNGFLVGGASLKPEFVDIIKA 248          
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_TAESO (Triosephosphate isomerase OS=Taenia solium PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 7.403e-31
Identity = 61/90 (67.78%), Postives = 72/90 (80.00%), Query Frame = -2
Query:  258 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 527
            WD VV+AYEPVWAIGTGK ATPAQAQEVH  +R W++ +V A +A   RI+YGGSV  +N K+L  QPDVDGFLVGGASLKP+FI II +
Sbjct:  159 WDKVVIAYEPVWAIGTGKTATPAQAQEVHKVVRDWIRKHVDAGIADKVRILYGGSVTASNAKDLGTQPDVDGFLVGGASLKPDFITIINA 248          
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_SCHMA (Triosephosphate isomerase OS=Schistosoma mansoni GN=TPI PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 7.403e-31
Identity = 66/90 (73.33%), Postives = 69/90 (76.67%), Query Frame = -2
Query:  258 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 527
            W  VV+AYEPVWAIGTGKVATP QAQEVH  LRKW K N    V    RIIYGGSV  ANCKELA Q DVDGFLVGGASLKPEF +I K+
Sbjct:  161 WKRVVVAYEPVWAIGTGKVATPQQAQEVHNFLRKWFKTNAPNGVDEKIRIIYGGSVTAANCKELAQQHDVDGFLVGGASLKPEFTEICKA 250          
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_BOMMO (Triosephosphate isomerase OS=Bombyx mori GN=Tpi PE=1 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 1.649e-30
Identity = 61/90 (67.78%), Postives = 72/90 (80.00%), Query Frame = -2
Query:  258 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 527
            W+N+VLAYEPVWAIGTGK ATP QAQ+VH  LR WL  NVS  V+ + RI YGGSV  AN KELA+  D+DGFLVGGASLKPEF++I+ +
Sbjct:  157 WENIVLAYEPVWAIGTGKTATPQQAQDVHHALRNWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGFLVGGASLKPEFVEIVNA 246          
The following BLAST results are available for this feature:
BLAST of CF832961 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_SCHPO1.762e-3266.67Triosephosphate isomerase OS=Schizosaccharomyces p... [more]
TPIS_SCHJA1.762e-3271.58Triosephosphate isomerase OS=Schistosoma japonicum... [more]
TPIS_COPC71.762e-3268.09Triosephosphate isomerase OS=Coprinopsis cinerea (... [more]
TPIS_ASPOR6.696e-3271.11Triosephosphate isomerase OS=Aspergillus oryzae GN... [more]
TPIS_LEIME8.745e-3272.73Triosephosphate isomerase OS=Leishmania mexicana P... [more]
TPISL_HUMAN4.340e-3165.26Putative triosephosphate isomerase-like protein LO... [more]
TPIS_TRYBB7.403e-3165.96Triosephosphate isomerase, glycosomal OS=Trypanoso... [more]
TPIS_TAESO7.403e-3167.78Triosephosphate isomerase OS=Taenia solium PE=2 SV... [more]
TPIS_SCHMA7.403e-3173.33Triosephosphate isomerase OS=Schistosoma mansoni G... [more]
TPIS_BOMMO1.649e-3067.78Triosephosphate isomerase OS=Bombyx mori GN=Tpi PE... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_02L22_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02L22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832961 ID=CF832961; Name=CF832961; organism=Citrus sinensis; type=EST; length=543bp
TTTTTTTTTTTTTTTTGAAGAAGGGAAAAGCAACCATTTATTAAATCCAC
AATGATAAGTTTCAAATCCCCACTGAAATAGGAAAGAGATTCTTAAGAAT
TCTGAAGATTTAACTTATTATACTGGAAAGGCGTTGGTAACACTTAACAG
ACCACAAAAATTACAACGCTAGTTTCCAGAACGCATAACAGAGAAAACTG
CAGGCATCAGCAAGCCGAGTAGCTTGGTCTTTAACTTCAATTCTTCTTCA
CTGTGGCAGACTTGATAATATCGATGAACTCCGGCTTTAGAGAAGCTCCA
CCAACCAAAAATCCATCCACATCAGGTTGTGCTGCCAATTCTTTGCAATT
TGCTCCATTTACAGAACCTCCGTAGATGATTCTAGTTGATGCTGCAACTT
CAGCACTGACATTGTCTTTAAGCCATTTCCTCAGTTCAGCATGGACTTCC
TGAGCCTGAGCAGGGGTTGCAACCTTCCCGGTACCAATGGCCCAAACTGG
CTCATAAGCCAACACAACATTGTCCCAGTTGGATATTTTTTCT
back to top