CF832961

Overview
NameCF832961
Unique NameCF832961
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length543
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_CLOK5 (Triosephosphate isomerase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=tpiA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.556e-15
Identity = 41/82 (50.00%), Postives = 50/82 (60.98%), Query Frame = -2
Query:  279 DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 524
            + +V+AYEP+WAIGTGK AT  QA +  A +R  +        A   RI YGGSV  A  K    QP +DG LVGGASLKP+
Sbjct:  159 EKIVIAYEPIWAIGTGKTATDKQANDTIAHIRGVVSKMYGENAAEVVRIQYGGSVKPATIKAQMEQPHIDGALVGGASLKPQ 240          
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_CLOBL (Triosephosphate isomerase OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=tpiA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.556e-15
Identity = 42/82 (51.22%), Postives = 51/82 (62.20%), Query Frame = -2
Query:  279 DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 524
            + +V+AYEP+WAIGTGK AT  QA E    +R  +KD     VA   RI YGGSV     K   A+ ++DG LVGGASLK E
Sbjct:  159 EKLVIAYEPIWAIGTGKTATDEQANETIGYIRTVVKDMYGENVADKVRIQYGGSVKPGTIKAQMAKEEIDGALVGGASLKAE 240          
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_MYCHR (Triosephosphate isomerase OS=Mycoplasma hyorhinis GN=tpiA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.339e-15
Identity = 45/92 (48.91%), Postives = 60/92 (65.22%), Query Frame = -2
Query:  243 VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVKK 518
            V++AYEP+WAIGTGK ATP QAQ+V   +RK    N++        I+YGGSV+  N ++L  Q D++G LVGGASLK +    IK  T+ K
Sbjct:  162 VIVAYEPIWAIGTGKTATPEQAQQVCKFIRKQTNKNLT--------ILYGGSVSQENIEQLLNQADINGALVGGASLKVD--SFIKLLTLNK 243          
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_MYCGE (Triosephosphate isomerase OS=Mycoplasma genitalium GN=tpiA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.339e-15
Identity = 39/79 (49.37%), Postives = 54/79 (68.35%), Query Frame = -2
Query:  285 NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 521
            N+V+AYEP+WAIGTGK ATP  A +    +R+++ D     VA +  I+YGGSV+  N ++LA    +DGFLVG ASL+
Sbjct:  154 NLVIAYEPLWAIGTGKTATPEVANQTIKTIREYINDLYDENVANNISILYGGSVDHNNIQKLAIMEQIDGFLVGKASLE 232          
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_CLOBM (Triosephosphate isomerase OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=tpiA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.339e-15
Identity = 41/82 (50.00%), Postives = 52/82 (63.41%), Query Frame = -2
Query:  279 DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 524
            + +V+AYEP+WAIGTGK AT  QA E    +R  +K     +VA+  RI YGGSV     K   A+ ++DG LVGGASLK E
Sbjct:  159 EKLVIAYEPIWAIGTGKTATDEQANETIGYIRTVVKSMYGEDVASKVRIQYGGSVKPGTIKAQMAKEEIDGALVGGASLKAE 240          
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_CLOBB (Triosephosphate isomerase OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=tpiA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.339e-15
Identity = 43/82 (52.44%), Postives = 50/82 (60.98%), Query Frame = -2
Query:  279 DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 524
            + VV+AYEP+WAIGTGK AT  QA E    +R  + +    EVA   RI YGGSV      E  A  D+DG LVGGASLK E
Sbjct:  159 EKVVIAYEPIWAIGTGKTATKEQANETILAIRNVVVEMYGKEVADKVRIQYGGSVKPNTITEQMAMSDIDGALVGGASLKAE 240          
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_CLOBA (Triosephosphate isomerase OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=tpiA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.339e-15
Identity = 43/82 (52.44%), Postives = 50/82 (60.98%), Query Frame = -2
Query:  279 DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 524
            + VV+AYEP+WAIGTGK AT  QA E    +R  + +    EVA   RI YGGSV      E  A  D+DG LVGGASLK E
Sbjct:  159 EKVVIAYEPIWAIGTGKTATKEQANETILAIRNVVVEMYGKEVADKVRIQYGGSVKPNTITEQMAMSDIDGALVGGASLKAE 240          
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_CHLPN (Triosephosphate isomerase OS=Chlamydia pneumoniae GN=tpiA PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 3.339e-15
Identity = 42/99 (42.42%), Postives = 59/99 (59.60%), Query Frame = -2
Query:  249 EKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATV 542
            E++ N    ++AYEPVWAIGTGKVA  +  Q++H   R+ + +  S   A    I+YGGSV   N +      DVDG LVGGASL+ + F ++ K+  V
Sbjct:  156 EQMDNGSEFLIAYEPVWAIGTGKVAEASDVQDIHMFCREVVAERFSEATAEEISILYGGSVKVDNAQRFGQCSDVDGLLVGGASLEGQSFFEVAKNFNV 254          
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_MYCHY (Triosephosphate isomerase OS=Mycoplasma hyopneumoniae GN=tpiA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.360e-15
Identity = 41/88 (46.59%), Postives = 55/88 (62.50%), Query Frame = -2
Query:  279 EKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 542
            + + N+   ++AYEP+WAIGTGK AT A A++V   +++    N        T +IYGGSVN  N  EL +Q  +DG LVGGASL PE
Sbjct:  154 KSVLNFQKAIIAYEPIWAIGTGKTATAAIAEKVCGLIKENFGKN--------TMVIYGGSVNSKNINELVSQKSIDGALVGGASLDPE 233          
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_MYCHJ (Triosephosphate isomerase OS=Mycoplasma hyopneumoniae (strain J / ATCC 25934 / NCTC 10110) GN=tpiA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.360e-15
Identity = 41/88 (46.59%), Postives = 55/88 (62.50%), Query Frame = -2
Query:  279 EKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 542
            + + N+   ++AYEP+WAIGTGK AT A A++V   +++    N        T +IYGGSVN  N  EL +Q  +DG LVGGASL PE
Sbjct:  154 KSVLNFQKAIIAYEPIWAIGTGKTATAAIAEKVCGLIKENFGKN--------TMVIYGGSVNSKNINELVSQKSIDGALVGGASLDPE 233          
The following BLAST results are available for this feature:
BLAST of CF832961 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_CLOK52.556e-1550.00Triosephosphate isomerase OS=Clostridium kluyveri ... [more]
TPIS_CLOBL2.556e-1551.22Triosephosphate isomerase OS=Clostridium botulinum... [more]
TPIS_MYCHR3.339e-1548.91Triosephosphate isomerase OS=Mycoplasma hyorhinis ... [more]
TPIS_MYCGE3.339e-1549.37Triosephosphate isomerase OS=Mycoplasma genitalium... [more]
TPIS_CLOBM3.339e-1550.00Triosephosphate isomerase OS=Clostridium botulinum... [more]
TPIS_CLOBB3.339e-1552.44Triosephosphate isomerase OS=Clostridium botulinum... [more]
TPIS_CLOBA3.339e-1552.44Triosephosphate isomerase OS=Clostridium botulinum... [more]
TPIS_CHLPN3.339e-1542.42Triosephosphate isomerase OS=Chlamydia pneumoniae ... [more]
TPIS_MYCHY4.360e-1546.59Triosephosphate isomerase OS=Mycoplasma hyopneumon... [more]
TPIS_MYCHJ4.360e-1546.59Triosephosphate isomerase OS=Mycoplasma hyopneumon... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02L22_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02L22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832961 ID=CF832961; Name=CF832961; organism=Citrus sinensis; type=EST; length=543bp
TTTTTTTTTTTTTTTTGAAGAAGGGAAAAGCAACCATTTATTAAATCCAC
AATGATAAGTTTCAAATCCCCACTGAAATAGGAAAGAGATTCTTAAGAAT
TCTGAAGATTTAACTTATTATACTGGAAAGGCGTTGGTAACACTTAACAG
ACCACAAAAATTACAACGCTAGTTTCCAGAACGCATAACAGAGAAAACTG
CAGGCATCAGCAAGCCGAGTAGCTTGGTCTTTAACTTCAATTCTTCTTCA
CTGTGGCAGACTTGATAATATCGATGAACTCCGGCTTTAGAGAAGCTCCA
CCAACCAAAAATCCATCCACATCAGGTTGTGCTGCCAATTCTTTGCAATT
TGCTCCATTTACAGAACCTCCGTAGATGATTCTAGTTGATGCTGCAACTT
CAGCACTGACATTGTCTTTAAGCCATTTCCTCAGTTCAGCATGGACTTCC
TGAGCCTGAGCAGGGGTTGCAACCTTCCCGGTACCAATGGCCCAAACTGG
CTCATAAGCCAACACAACATTGTCCCAGTTGGATATTTTTTCT
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