CF832961

Overview
NameCF832961
Unique NameCF832961
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length543
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2749 contig Csv1_Contig2749:163..705. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_CLOB1 (Triosephosphate isomerase OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=tpiA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.826e-14
Identity = 41/82 (50.00%), Postives = 50/82 (60.98%), Query Frame = -2
Query:  279 DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 524
            + +V+AYEP+WAIGTGK AT  QA E    +R  +K      VA   RI YGGSV     K   A+ ++DG LVGGASLK E
Sbjct:  159 EKLVIAYEPIWAIGTGKTATDEQANETIGYIRTVVKAMYGESVADKIRIQYGGSVKPGTIKAQMAKEEIDGALVGGASLKAE 240          
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_BUCAP (Triosephosphate isomerase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=tpiA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.826e-14
Identity = 43/90 (47.78%), Postives = 56/90 (62.22%), Query Frame = -2
Query:  261 NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLK--DNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIK 521
            N V+AYEP+W+IGTG  A P   Q +H  ++ ++K  D VSAE   +  + YGGSV   N      QPD+DG L+G ASLK  EF+ IIK
Sbjct:  162 NAVIAYEPIWSIGTGVSADPKNVQLIHKFIKNYIKKYDIVSAE---NLIVQYGGSVTSLNAGNFLKQPDIDGLLIGSASLKHEEFLKIIK 248          
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_SYNJB (Triosephosphate isomerase OS=Synechococcus sp. GN=tpiA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.691e-14
Identity = 42/88 (47.73%), Postives = 55/88 (62.50%), Query Frame = -2
Query:  264 DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP-EFIDII 524
            +N+V+AYEP+WAIGTG+     +A  V   +R+ L +       A   I+YGGSV   N  EL AQP++DG LVGGASL P EF  I+
Sbjct:  162 ENLVIAYEPIWAIGTGQTCAAQEANRVIGLIRQHLGN-------AQLPILYGGSVKAGNIDELMAQPEIDGVLVGGASLDPQEFARIV 242          
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_STRA5 (Triosephosphate isomerase OS=Streptococcus agalactiae serotype V GN=tpiA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.691e-14
Identity = 43/91 (47.25%), Postives = 55/91 (60.44%), Query Frame = -2
Query:  261 NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE----FIDIIK 521
            ++V+AYEP+WAIGTGK AT   AQ +   +R  +  +    VA   R+ YGGSV   N  E  A PDVDG LVGGASL+ E     +D +K
Sbjct:  162 SLVIAYEPIWAIGTGKSATQDDAQNMCKAVRDVVAADFGQAVADKVRVQYGGSVKPENVAEYMACPDVDGALVGGASLEAESFLALLDFVK 252          
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_STRA3 (Triosephosphate isomerase OS=Streptococcus agalactiae serotype III GN=tpiA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.691e-14
Identity = 43/91 (47.25%), Postives = 55/91 (60.44%), Query Frame = -2
Query:  261 NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE----FIDIIK 521
            ++V+AYEP+WAIGTGK AT   AQ +   +R  +  +    VA   R+ YGGSV   N  E  A PDVDG LVGGASL+ E     +D +K
Sbjct:  162 SLVIAYEPIWAIGTGKSATQDDAQNMCKAVRDVVAADFGQAVADKVRVQYGGSVKPENVAEYMACPDVDGALVGGASLEAESFLALLDFVK 252          
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_STRA1 (Triosephosphate isomerase OS=Streptococcus agalactiae serotype Ia GN=tpiA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.691e-14
Identity = 43/91 (47.25%), Postives = 55/91 (60.44%), Query Frame = -2
Query:  261 NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE----FIDIIK 521
            ++V+AYEP+WAIGTGK AT   AQ +   +R  +  +    VA   R+ YGGSV   N  E  A PDVDG LVGGASL+ E     +D +K
Sbjct:  162 SLVIAYEPIWAIGTGKSATQDDAQNMCKAVRDVVAADFGQAVADKVRVQYGGSVKPENVAEYMACPDVDGALVGGASLEAESFLALLDFVK 252          
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_PSYCK (Triosephosphate isomerase OS=Psychrobacter cryohalolentis (strain K5) GN=tpiA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.691e-14
Identity = 40/88 (45.45%), Postives = 55/88 (62.50%), Query Frame = -2
Query:  255 VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSA 518
            +++AYEPVWAIGTGKV T A+    H  +++ L     A+  ++  ++YGGSVN  N    AA P +DG LVGGASLK +    I +A
Sbjct:  178 LIIAYEPVWAIGTGKVPTVAEVSATHKHIKQILAG--FADSLSNMTVLYGGSVNADNANSFAADPMIDGALVGGASLKADSFLTIATA 263          
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_PROMM (Triosephosphate isomerase OS=Prochlorococcus marinus (strain MIT 9313) GN=tpiA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.691e-14
Identity = 42/83 (50.60%), Postives = 51/83 (61.45%), Query Frame = -2
Query:  279 DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRII-YGGSVNGANCKELAAQPDVDGFLVGGASLKPE 524
            D +V+AYEP+WAIGTGK    ++A  +   +R+W        V AS  II YGGSV   N  EL A  D+DG LVGGASL PE
Sbjct:  158 DKLVVAYEPIWAIGTGKTCEASEANRICGLIRRW--------VGASELIIQYGGSVKPGNIDELMAMSDIDGVLVGGASLDPE 232          
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_BRASB (Triosephosphate isomerase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=tpiA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.691e-14
Identity = 43/88 (48.86%), Postives = 57/88 (64.77%), Query Frame = -2
Query:  261 NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIK 521
            N+ +AYEPVWAIGTG   T    +++HA +R  L +  + E  A  RI+YGGSV  +N  EL A  +V+G LVGGASLK  +F+ I K
Sbjct:  163 NLTVAYEPVWAIGTGLTPTAKDVEQIHAFIRTLLIERFNGE-GARMRILYGGSVKPSNAAELMAVANVNGALVGGASLKAADFLAIAK 249          
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_XYLFT (Triosephosphate isomerase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=tpiA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.821e-14
Identity = 42/89 (47.19%), Postives = 55/89 (61.80%), Query Frame = -2
Query:  249 VLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATV 515
            ++AYEPVWAIGTG+ A P+Q Q +HA +R  +     A +  S  I+YGG +   N  EL +Q DVDG L+GGASL  +    I  ATV
Sbjct:  162 LIAYEPVWAIGTGRHADPSQVQAMHAFIRGEIARQ-DARIGDSLLILYGGGIKPCNAAELFSQQDVDGGLIGGASLVADDFLAIARATV 249          
The following BLAST results are available for this feature:
BLAST of CF832961 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_CLOB12.826e-1450.00Triosephosphate isomerase OS=Clostridium botulinum... [more]
TPIS_BUCAP2.826e-1447.78Triosephosphate isomerase OS=Buchnera aphidicola s... [more]
TPIS_SYNJB3.691e-1447.73Triosephosphate isomerase OS=Synechococcus sp. GN=... [more]
TPIS_STRA53.691e-1447.25Triosephosphate isomerase OS=Streptococcus agalact... [more]
TPIS_STRA33.691e-1447.25Triosephosphate isomerase OS=Streptococcus agalact... [more]
TPIS_STRA13.691e-1447.25Triosephosphate isomerase OS=Streptococcus agalact... [more]
TPIS_PSYCK3.691e-1445.45Triosephosphate isomerase OS=Psychrobacter cryohal... [more]
TPIS_PROMM3.691e-1450.60Triosephosphate isomerase OS=Prochlorococcus marin... [more]
TPIS_BRASB3.691e-1448.86Triosephosphate isomerase OS=Bradyrhizobium sp. (s... [more]
TPIS_XYLFT4.821e-1447.19Triosephosphate isomerase OS=Xylella fastidiosa (s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02L22_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02L22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832961 ID=CF832961; Name=CF832961; organism=Citrus sinensis; type=EST; length=543bp
TTTTTTTTTTTTTTTTGAAGAAGGGAAAAGCAACCATTTATTAAATCCAC
AATGATAAGTTTCAAATCCCCACTGAAATAGGAAAGAGATTCTTAAGAAT
TCTGAAGATTTAACTTATTATACTGGAAAGGCGTTGGTAACACTTAACAG
ACCACAAAAATTACAACGCTAGTTTCCAGAACGCATAACAGAGAAAACTG
CAGGCATCAGCAAGCCGAGTAGCTTGGTCTTTAACTTCAATTCTTCTTCA
CTGTGGCAGACTTGATAATATCGATGAACTCCGGCTTTAGAGAAGCTCCA
CCAACCAAAAATCCATCCACATCAGGTTGTGCTGCCAATTCTTTGCAATT
TGCTCCATTTACAGAACCTCCGTAGATGATTCTAGTTGATGCTGCAACTT
CAGCACTGACATTGTCTTTAAGCCATTTCCTCAGTTCAGCATGGACTTCC
TGAGCCTGAGCAGGGGTTGCAACCTTCCCGGTACCAATGGCCCAAACTGG
CTCATAAGCCAACACAACATTGTCCCAGTTGGATATTTTTTCT
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