CF832961

Overview
NameCF832961
Unique NameCF832961
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length543
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2749 contig Csv1_Contig2749:163..705. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_ENTHI (Triosephosphate isomerase OS=Entamoeba histolytica GN=TPI PE=1 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.069e-29
Identity = 63/95 (66.32%), Postives = 74/95 (77.89%), Query Frame = -2
Query:  246 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KPEFIDIIKSATVK 527
            W N++LAYEPVWAIGTGK ATP QAQEVH  +RKW+ +N+S EVA +TRI YGGSVN ANC ELA + D+DGFLVGGASL   +F  II S + K
Sbjct:  166 WKNIILAYEPVWAIGTGKTATPDQAQEVHQYIRKWMTENISKEVAEATRIQYGGSVNPANCNELAKKADIDGFLVGGASLDAAKFKTIINSVSEK 260          
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPI2_GIALA (Triosephosphate isomerase OS=Giardia lamblia PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.382e-29
Identity = 59/88 (67.05%), Postives = 70/88 (79.55%), Query Frame = -2
Query:  264 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDII 527
            W+NVV+AYEPVW+IGTG VATP QA+EVH  LRKW  + V AE A   RIIYGGS NG+NC++L   P++DGFLVGGASLKPEF  +I
Sbjct:  162 WENVVIAYEPVWSIGTGVVATPEQAEEVHVGLRKWFAEKVCAEGAQHIRIIYGGSANGSNCEKLGQCPNIDGFLVGGASLKPEFTTMI 249          
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_PLAFA (Triosephosphate isomerase OS=Plasmodium falciparum GN=TPI PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.182e-28
Identity = 61/94 (64.89%), Postives = 70/94 (74.47%), Query Frame = -2
Query:  255 ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSA 536
            I N+DNV+LAYEP+WAIGTGK ATP QAQ VH E+RK +KD    + A   RI+YGGSVN  NC  L  Q D+DGFLVG ASLK  F+DIIKSA
Sbjct:  154 IDNFDNVILAYEPLWAIGTGKTATPEQAQLVHKEIRKIVKDTCGEKQANQIRILYGGSVNTENCSSLIQQEDIDGFLVGNASLKESFVDIIKSA 247          
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_PLAF7 (Triosephosphate isomerase OS=Plasmodium falciparum (isolate 3D7) GN=TPI PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.182e-28
Identity = 61/94 (64.89%), Postives = 70/94 (74.47%), Query Frame = -2
Query:  255 ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSA 536
            I N+DNV+LAYEP+WAIGTGK ATP QAQ VH E+RK +KD    + A   RI+YGGSVN  NC  L  Q D+DGFLVG ASLK  F+DIIKSA
Sbjct:  154 IDNFDNVILAYEPLWAIGTGKTATPEQAQLVHKEIRKIVKDTCGEKQANQIRILYGGSVNTENCSSLIQQEDIDGFLVGNASLKESFVDIIKSA 247          
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_DEBHA (Triosephosphate isomerase OS=Debaryomyces hansenii GN=TPI1 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.182e-28
Identity = 58/93 (62.37%), Postives = 70/93 (75.27%), Query Frame = -2
Query:  258 ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 536
            +S+W  +V+AYEPVWAIGTG  ATP  AQE H  +R+ L  ++ A+ A  TRI+YGGSVNG N  E   + DVDGFLVGGASLKPEF+DIIKS
Sbjct:  154 VSDWSKIVVAYEPVWAIGTGLAATPEDAQETHKAIREHLSKSIGADAAEKTRILYGGSVNGKNAPEFKDKADVDGFLVGGASLKPEFVDIIKS 246          
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPI1_GIALA (Triosephosphate isomerase OS=Giardia lamblia PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.182e-28
Identity = 59/92 (64.13%), Postives = 70/92 (76.09%), Query Frame = -2
Query:  252 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAT 527
            W  VV+AYEPVW+IGTG VATP QA+EVH  LRKW  + V AE A   RIIYGGS NG+NC++L   P++DGFLVGGASLKPEF+ +I   T
Sbjct:  162 WKEVVIAYEPVWSIGTGVVATPEQAEEVHVGLRKWFAEKVCAEGAQHIRIIYGGSANGSNCEKLGQCPNIDGFLVGGASLKPEFMTMIDILT 253          
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_ZYGBA (Triosephosphate isomerase OS=Zygosaccharomyces bailii GN=TPI1 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.544e-28
Identity = 57/95 (60.00%), Postives = 70/95 (73.68%), Query Frame = -2
Query:  258 EKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 542
            +K+ +W NVV+AYEPVWAIGTG  ATP  AQE+H  +R++L   +  + A  TRI+YGGS NG N      +PDVDGFLVGGASLKPEF+DII S
Sbjct:  152 DKVKDWSNVVIAYEPVWAIGTGLAATPEDAQEIHHSIREFLAKKLGEKTAQETRILYGGSANGKNAVTFKDKPDVDGFLVGGASLKPEFVDIINS 246          
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_CANAL (Triosephosphate isomerase OS=Candida albicans GN=TPI1 PE=1 SV=3)

HSP 1 Score: 125.176 bits (313), Expect = 2.016e-28
Identity = 58/93 (62.37%), Postives = 71/93 (76.34%), Query Frame = -2
Query:  258 ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 536
            +S+W N+V+AYEPVWAIGTG  ATP  A+E H  +R  L  ++ AE A  TRI+YGGSVNG N K+   + +VDGFLVGGASLKPEF+DIIKS
Sbjct:  154 VSDWSNIVVAYEPVWAIGTGLAATPEDAEETHKGIRAHLAKSIGAEQAEKTRILYGGSVNGKNAKDFKDKANVDGFLVGGASLKPEFVDIIKS 246          
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_CAEEL (Triosephosphate isomerase OS=Caenorhabditis elegans GN=tpi-1 PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 2.633e-28
Identity = 59/95 (62.11%), Postives = 74/95 (77.89%), Query Frame = -2
Query:  258 EKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 542
            +K  +W+N+V+AYEPVWAIGTGK A+  QAQEVH  +R +LK+ VS  VA +TRIIYGGSV   N  EL  +PD+DGFLVGGASLKP+F+ II +
Sbjct:  151 DKGVSWENIVIAYEPVWAIGTGKTASGEQAQEVHEWIRAFLKEKVSPAVADATRIIYGGSVTADNAAELGKKPDIDGFLVGGASLKPDFVKIINA 245          
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_ASHGO (Triosephosphate isomerase OS=Ashbya gossypii GN=TPI1 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.866e-28
Identity = 57/95 (60.00%), Postives = 71/95 (74.74%), Query Frame = -2
Query:  258 EKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 542
            EK+ +W NVV+AYEPVWAIGTG  AT   AQ++HA +R +L +  S +VA + RI++GGS NGAN      + DVDGFLVGGASLKPEF+DII S
Sbjct:  152 EKVKDWTNVVIAYEPVWAIGTGLAATAEDAQDIHAAIRDFLAERTSRDVADAVRILFGGSANGANAASFRDKADVDGFLVGGASLKPEFVDIINS 246          
The following BLAST results are available for this feature:
BLAST of CF832961 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_ENTHI1.069e-2966.32Triosephosphate isomerase OS=Entamoeba histolytica... [more]
TPI2_GIALA2.382e-2967.05Triosephosphate isomerase OS=Giardia lamblia PE=3 ... [more]
TPIS_PLAFA1.182e-2864.89Triosephosphate isomerase OS=Plasmodium falciparum... [more]
TPIS_PLAF71.182e-2864.89Triosephosphate isomerase OS=Plasmodium falciparum... [more]
TPIS_DEBHA1.182e-2862.37Triosephosphate isomerase OS=Debaryomyces hansenii... [more]
TPI1_GIALA1.182e-2864.13Triosephosphate isomerase OS=Giardia lamblia PE=1 ... [more]
TPIS_ZYGBA1.544e-2860.00Triosephosphate isomerase OS=Zygosaccharomyces bai... [more]
TPIS_CANAL2.016e-2862.37Triosephosphate isomerase OS=Candida albicans GN=T... [more]
TPIS_CAEEL2.633e-2862.11Triosephosphate isomerase OS=Caenorhabditis elegan... [more]
TPIS_ASHGO5.866e-2860.00Triosephosphate isomerase OS=Ashbya gossypii GN=TP... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02L22_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02L22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832961 ID=CF832961; Name=CF832961; organism=Citrus sinensis; type=EST; length=543bp
TTTTTTTTTTTTTTTTGAAGAAGGGAAAAGCAACCATTTATTAAATCCAC
AATGATAAGTTTCAAATCCCCACTGAAATAGGAAAGAGATTCTTAAGAAT
TCTGAAGATTTAACTTATTATACTGGAAAGGCGTTGGTAACACTTAACAG
ACCACAAAAATTACAACGCTAGTTTCCAGAACGCATAACAGAGAAAACTG
CAGGCATCAGCAAGCCGAGTAGCTTGGTCTTTAACTTCAATTCTTCTTCA
CTGTGGCAGACTTGATAATATCGATGAACTCCGGCTTTAGAGAAGCTCCA
CCAACCAAAAATCCATCCACATCAGGTTGTGCTGCCAATTCTTTGCAATT
TGCTCCATTTACAGAACCTCCGTAGATGATTCTAGTTGATGCTGCAACTT
CAGCACTGACATTGTCTTTAAGCCATTTCCTCAGTTCAGCATGGACTTCC
TGAGCCTGAGCAGGGGTTGCAACCTTCCCGGTACCAATGGCCCAAACTGG
CTCATAAGCCAACACAACATTGTCCCAGTTGGATATTTTTTCT
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