CF832961

Overview
NameCF832961
Unique NameCF832961
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length543
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2749 contig Csv1_Contig2749:163..705. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_HELVI (Triosephosphate isomerase (Fragment) OS=Heliothis virescens GN=Tpi PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.013e-24
Identity = 52/73 (71.23%), Postives = 58/73 (79.45%), Query Frame = -2
Query:  315 SNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVD 533
            +NW NVVLAYEPVWAIGTGK A+P QAQ+VHA LR WL  N S +VAAS RI YGGSV  AN KEL+A PD+D
Sbjct:  143 NNWANVVLAYEPVWAIGTGKTASPQQAQDVHASLRNWLSSNASPDVAASVRIQYGGSVTAANAKELSAFPDID 215          
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_CHLT3 (Triosephosphate isomerase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=tpiA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.935e-24
Identity = 58/90 (64.44%), Postives = 67/90 (74.44%), Query Frame = -2
Query:  255 NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 521
            +VV+AYEPVWAIGTGK ATP QAQEVHA +R  +KD    EVA   RI YGGSV  +N KEL   PD+DG L+GGASL  E F++IIKSA
Sbjct:  162 SVVIAYEPVWAIGTGKTATPEQAQEVHAFIRGIVKDMFGEEVANELRIQYGGSVKTSNAKELFGMPDIDGGLIGGASLNAEDFVEIIKSA 251          
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_PSYIN (Triosephosphate isomerase OS=Psychromonas ingrahamii (strain 37) GN=tpiA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 5.682e-23
Identity = 55/91 (60.44%), Postives = 69/91 (75.82%), Query Frame = -2
Query:  255 DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGAS-LKPEFIDIIKSA 524
            +N V+AYEPVWAIGTGKVA+  QAQ+VHA +R WL +  S  VAA  +I+YGGSV  ++ KEL AQPD+DG LVGGA+ L  EF+ II+ A
Sbjct:  160 ENAVIAYEPVWAIGTGKVASSEQAQDVHAHIRTWLAEQ-SKVVAAKVQILYGGSVKASSAKELFAQPDIDGGLVGGAALLVEEFVGIIEGA 249          
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_COLP3 (Triosephosphate isomerase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=tpiA PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.683e-22
Identity = 55/98 (56.12%), Postives = 68/98 (69.39%), Query Frame = -2
Query:  243 ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVKK 536
            I  + +VV+AYEPVWAIGTGK A+ A AQE H  +RK+L    + +VA    ++YGGSVN ANC+EL AQ D+DG L+GGASLK E   II SA   K
Sbjct:  160 IEKFKDVVIAYEPVWAIGTGKTASSAMAQETHQFIRKFLAQQ-NEQVADKVPLLYGGSVNAANCEELFAQTDIDGGLIGGASLKAEQFKIICSAAKGK 256          
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: PGKT_THEMA (Bifunctional PGK/TIM OS=Thermotoga maritima GN=pgk/tpi PE=1 SV=4)

HSP 1 Score: 104.375 bits (259), Expect = 3.683e-22
Identity = 52/86 (60.47%), Postives = 62/86 (72.09%), Query Frame = -2
Query:  261 VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIK 518
            VV+AYEPVWAIGTG+VATP QAQEVHA +RK L +    E A S RI+YGGS+   N   L  Q D+DG LVGGASLK  FI++ +
Sbjct:  562 VVIAYEPVWAIGTGRVATPQQAQEVHAFIRKLLSEMYDEETAGSIRILYGGSIKPDNFLGLIVQKDIDGGLVGGASLKESFIELAR 647          
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_PASMU (Triosephosphate isomerase OS=Pasteurella multocida GN=tpiA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 8.204e-22
Identity = 59/99 (59.60%), Postives = 68/99 (68.69%), Query Frame = -2
Query:  240 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWL--KDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSATVKKN 527
            ++  V+AYEP+WAIGTGK ATPAQAQ VHA +R  +  KDN  AE      I YGGSVN AN  EL  QPD+DG LVGGASLK P F  I+K+A   KN
Sbjct:  166 FNGAVIAYEPIWAIGTGKSATPAQAQAVHAFIRGHIAKKDNAVAEQVI---IQYGGSVNDANAAELFTQPDIDGALVGGASLKAPAFAVIVKAAAKAKN 261          
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_HAEIN (Triosephosphate isomerase OS=Haemophilus influenzae GN=tpiA PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 8.204e-22
Identity = 57/100 (57.00%), Postives = 67/100 (67.00%), Query Frame = -2
Query:  240 ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSATVKKN 536
            +  ++  V+AYEP+WAIGTGK ATPAQAQ VHA +R  +    S  VA    I YGGSVN AN  EL  QPD+DG LVGGASLK P F  I+K+A   KN
Sbjct:  165 VEAFNGAVIAYEPIWAIGTGKSATPAQAQAVHAFIRGHIAAK-SQAVAEQVIIQYGGSVNDANAAELFTQPDIDGALVGGASLKAPAFAVIVKAAAAAKN 263          
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_HAEIG (Triosephosphate isomerase OS=Haemophilus influenzae (strain PittGG) GN=tpiA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 8.204e-22
Identity = 57/100 (57.00%), Postives = 67/100 (67.00%), Query Frame = -2
Query:  240 ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSATVKKN 536
            +  ++  V+AYEP+WAIGTGK ATPAQAQ VHA +R  +    S  VA    I YGGSVN AN  EL  QPD+DG LVGGASLK P F  I+K+A   KN
Sbjct:  165 VEAFNGAVIAYEPIWAIGTGKSATPAQAQAVHAFIRGHIAAK-SQAVAEQVIIQYGGSVNDANAAELFTQPDIDGALVGGASLKAPAFAVIVKAAAAAKN 263          
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_HAEIE (Triosephosphate isomerase OS=Haemophilus influenzae (strain PittEE) GN=tpiA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 8.204e-22
Identity = 57/100 (57.00%), Postives = 67/100 (67.00%), Query Frame = -2
Query:  240 ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSATVKKN 536
            +  ++  V+AYEP+WAIGTGK ATPAQAQ VHA +R  +    S  VA    I YGGSVN AN  EL  QPD+DG LVGGASLK P F  I+K+A   KN
Sbjct:  165 VEAFNGAVIAYEPIWAIGTGKSATPAQAQAVHAFIRGHIAAK-SQAVAEQVIIQYGGSVNDANAAELFTQPDIDGALVGGASLKAPAFAVIVKAAAAAKN 263          
BLAST of CF832961 vs. ExPASy Swiss-Prot
Match: TPIS_HAEI8 (Triosephosphate isomerase OS=Haemophilus influenzae (strain 86-028NP) GN=tpiA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 8.204e-22
Identity = 57/100 (57.00%), Postives = 67/100 (67.00%), Query Frame = -2
Query:  240 ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSATVKKN 536
            +  ++  V+AYEP+WAIGTGK ATPAQAQ VHA +R  +    S  VA    I YGGSVN AN  EL  QPD+DG LVGGASLK P F  I+K+A   KN
Sbjct:  165 VEAFNGAVIAYEPIWAIGTGKSATPAQAQAVHAFIRGHIAAK-SQAVAEQVIIQYGGSVNDANAAELFTQPDIDGALVGGASLKAPAFAVIVKAAAAAKN 263          
The following BLAST results are available for this feature:
BLAST of CF832961 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_HELVI3.013e-2471.23Triosephosphate isomerase (Fragment) OS=Heliothis ... [more]
TPIS_CHLT33.935e-2464.44Triosephosphate isomerase OS=Chloroherpeton thalas... [more]
TPIS_PSYIN5.682e-2360.44Triosephosphate isomerase OS=Psychromonas ingraham... [more]
TPIS_COLP33.683e-2256.12Triosephosphate isomerase OS=Colwellia psychreryth... [more]
PGKT_THEMA3.683e-2260.47Bifunctional PGK/TIM OS=Thermotoga maritima GN=pgk... [more]
TPIS_PASMU8.204e-2259.60Triosephosphate isomerase OS=Pasteurella multocida... [more]
TPIS_HAEIN8.204e-2257.00Triosephosphate isomerase OS=Haemophilus influenza... [more]
TPIS_HAEIG8.204e-2257.00Triosephosphate isomerase OS=Haemophilus influenza... [more]
TPIS_HAEIE8.204e-2257.00Triosephosphate isomerase OS=Haemophilus influenza... [more]
TPIS_HAEI88.204e-2257.00Triosephosphate isomerase OS=Haemophilus influenza... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02L22_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02L22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832961 ID=CF832961; Name=CF832961; organism=Citrus sinensis; type=EST; length=543bp
TTTTTTTTTTTTTTTTGAAGAAGGGAAAAGCAACCATTTATTAAATCCAC
AATGATAAGTTTCAAATCCCCACTGAAATAGGAAAGAGATTCTTAAGAAT
TCTGAAGATTTAACTTATTATACTGGAAAGGCGTTGGTAACACTTAACAG
ACCACAAAAATTACAACGCTAGTTTCCAGAACGCATAACAGAGAAAACTG
CAGGCATCAGCAAGCCGAGTAGCTTGGTCTTTAACTTCAATTCTTCTTCA
CTGTGGCAGACTTGATAATATCGATGAACTCCGGCTTTAGAGAAGCTCCA
CCAACCAAAAATCCATCCACATCAGGTTGTGCTGCCAATTCTTTGCAATT
TGCTCCATTTACAGAACCTCCGTAGATGATTCTAGTTGATGCTGCAACTT
CAGCACTGACATTGTCTTTAAGCCATTTCCTCAGTTCAGCATGGACTTCC
TGAGCCTGAGCAGGGGTTGCAACCTTCCCGGTACCAATGGCCCAAACTGG
CTCATAAGCCAACACAACATTGTCCCAGTTGGATATTTTTTCT
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