CF832962

Overview
NameCF832962
Unique NameCF832962
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length545
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF832962 vs. ExPASy Swiss-Prot
Match: TPIS_SHESR (Triosephosphate isomerase OS=Shewanella sp. (strain MR-7) GN=tpiA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.130e-21
Identity = 51/88 (57.95%), Postives = 66/88 (75.00%), Query Frame = 3 
Query:   18 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KPEFIDI 278
            +DN ++AYEP+WA+GTGK ATP QAQEVHA +RK L + VS  +  + RI+YGGSV  +N  +L AQPDVDG L+GGASL   EF+ +
Sbjct:  167 FDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRLSE-VSPFIGENIRILYGGSVTPSNAADLFAQPDVDGGLIGGASLNSTEFLSL 253
[Close]
BLAST of CF832962 vs. ExPASy Swiss-Prot
Match: TPIS_SHESM (Triosephosphate isomerase OS=Shewanella sp. (strain MR-4) GN=tpiA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.130e-21
Identity = 51/88 (57.95%), Postives = 66/88 (75.00%), Query Frame = 3 
Query:   18 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KPEFIDI 278
            +DN ++AYEP+WA+GTGK ATP QAQEVHA +RK L + VS  +  + RI+YGGSV  +N  +L AQPDVDG L+GGASL   EF+ +
Sbjct:  167 FDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRLSE-VSPFIGENIRILYGGSVTPSNAADLFAQPDVDGGLIGGASLNSSEFLSL 253
[Close]
BLAST of CF832962 vs. ExPASy Swiss-Prot
Match: TPIS_SHESA (Triosephosphate isomerase OS=Shewanella sp. (strain ANA-3) GN=tpiA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.130e-21
Identity = 51/88 (57.95%), Postives = 66/88 (75.00%), Query Frame = 3 
Query:   18 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KPEFIDI 278
            +DN ++AYEP+WA+GTGK ATP QAQEVHA +RK L + VS  +  + RI+YGGSV  +N  +L AQPDVDG L+GGASL   EF+ +
Sbjct:  167 FDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRLSE-VSPFIGENIRILYGGSVTPSNAADLFAQPDVDGGLIGGASLNSTEFLSL 253
[Close]
BLAST of CF832962 vs. ExPASy Swiss-Prot
Match: TPIS_SHEPC (Triosephosphate isomerase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=tpiA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.130e-21
Identity = 51/88 (57.95%), Postives = 66/88 (75.00%), Query Frame = 3 
Query:   18 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KPEFIDI 278
            +DN ++AYEP+WA+GTGK ATP QAQEVHA +RK L + VS  +  + RI+YGGSV  +N  +L AQPDVDG L+GGASL   EF+ +
Sbjct:  167 FDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRLSE-VSPFIGENIRILYGGSVTPSNAADLFAQPDVDGGLIGGASLNSSEFLSL 253
[Close]
BLAST of CF832962 vs. ExPASy Swiss-Prot
Match: TPIS_SHEON (Triosephosphate isomerase OS=Shewanella oneidensis GN=tpiA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.130e-21
Identity = 51/88 (57.95%), Postives = 66/88 (75.00%), Query Frame = 3 
Query:   18 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KPEFIDI 278
            +DN ++AYEP+WA+GTGK ATP QAQEVHA +RK L + VS  +  + RI+YGGSV  +N  +L AQPDVDG L+GGASL   EF+ +
Sbjct:  167 FDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRLSE-VSPFIGENIRILYGGSVTPSNAADLFAQPDVDGGLIGGASLNSTEFLSL 253
[Close]
BLAST of CF832962 vs. ExPASy Swiss-Prot
Match: TPIS_SHEB9 (Triosephosphate isomerase OS=Shewanella baltica (strain OS195) GN=tpiA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.130e-21
Identity = 51/88 (57.95%), Postives = 66/88 (75.00%), Query Frame = 3 
Query:   18 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KPEFIDI 278
            +DN ++AYEP+WA+GTGK ATP QAQEVHA +RK L + VS  +  + RI+YGGSV  +N  +L AQPDVDG L+GGASL   EF+ +
Sbjct:  167 FDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRLSE-VSPFIGENIRILYGGSVTPSNAADLFAQPDVDGGLIGGASLNSSEFLSL 253
[Close]
BLAST of CF832962 vs. ExPASy Swiss-Prot
Match: TPIS_SHEB8 (Triosephosphate isomerase OS=Shewanella baltica (strain OS185) GN=tpiA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.130e-21
Identity = 51/88 (57.95%), Postives = 66/88 (75.00%), Query Frame = 3 
Query:   18 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KPEFIDI 278
            +DN ++AYEP+WA+GTGK ATP QAQEVHA +RK L + VS  +  + RI+YGGSV  +N  +L AQPDVDG L+GGASL   EF+ +
Sbjct:  167 FDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRLSE-VSPFIGENIRILYGGSVTPSNAADLFAQPDVDGGLIGGASLNSSEFLSL 253
[Close]
BLAST of CF832962 vs. ExPASy Swiss-Prot
Match: TPIS_SHEB5 (Triosephosphate isomerase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=tpiA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.130e-21
Identity = 51/88 (57.95%), Postives = 66/88 (75.00%), Query Frame = 3 
Query:   18 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KPEFIDI 278
            +DN ++AYEP+WA+GTGK ATP QAQEVHA +RK L + VS  +  + RI+YGGSV  +N  +L AQPDVDG L+GGASL   EF+ +
Sbjct:  167 FDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRLSE-VSPFIGENIRILYGGSVTPSNAADLFAQPDVDGGLIGGASLNSSEFLSL 253
[Close]
BLAST of CF832962 vs. ExPASy Swiss-Prot
Match: TPIS_SALTY (Triosephosphate isomerase OS=Salmonella typhimurium GN=tpiA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.130e-21
Identity = 55/99 (55.56%), Postives = 71/99 (71.72%), Query Frame = 3 
Query:   18 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVS---AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 302
            ++  V+AYEPVWAIGTGK ATPAQAQ VH    K+++D+++   A++A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:  159 FEGAVIAYEPVWAIGTGKSATPAQAQAVH----KFIRDHIAKADAKIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK 253
[Close]
BLAST of CF832962 vs. ExPASy Swiss-Prot
Match: TPIS_SALTI (Triosephosphate isomerase OS=Salmonella typhi GN=tpiA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.130e-21
Identity = 55/99 (55.56%), Postives = 71/99 (71.72%), Query Frame = 3 
Query:   18 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVS---AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 302
            ++  V+AYEPVWAIGTGK ATPAQAQ VH    K+++D+++   A++A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:  159 FEGAVIAYEPVWAIGTGKSATPAQAQAVH----KFIRDHIAKADAKIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK 253
The following BLAST results are available for this feature:
BLAST of CF832962 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_SHESR4.130e-2157.95Triosephosphate isomerase OS=Shewanella sp. (strai... [more]
TPIS_SHESM4.130e-2157.95Triosephosphate isomerase OS=Shewanella sp. (strai... [more]
TPIS_SHESA4.130e-2157.95Triosephosphate isomerase OS=Shewanella sp. (strai... [more]
TPIS_SHEPC4.130e-2157.95Triosephosphate isomerase OS=Shewanella putrefacie... [more]
TPIS_SHEON4.130e-2157.95Triosephosphate isomerase OS=Shewanella oneidensis... [more]
TPIS_SHEB94.130e-2157.95Triosephosphate isomerase OS=Shewanella baltica (s... [more]
TPIS_SHEB84.130e-2157.95Triosephosphate isomerase OS=Shewanella baltica (s... [more]
TPIS_SHEB54.130e-2157.95Triosephosphate isomerase OS=Shewanella baltica (s... [more]
TPIS_SALTY4.130e-2155.56Triosephosphate isomerase OS=Salmonella typhimuriu... [more]
TPIS_SALTI4.130e-2155.56Triosephosphate isomerase OS=Salmonella typhi GN=t... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02L22_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02L22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832962 ID=CF832962; Name=CF832962; organism=Citrus sinensis; type=EST; length=545bp
CAGAAAAAATATCCAACTGGGACAATGTTGTGTTGGCTTATGAGCCAGTT
TGGGCCATTGGTACCGGGAAGGTTGCAACCCCTGCTCAGGCTCAGGAAGT
CCATGCTGAACTGAGGAAATGGCTTAAAGACAATGTCAGTGCTGAAGTTG
CAGCATCAACTAGAATCATCTACGGAGGTTCTGTAAATGGAGCAAATTGC
AAAGAATTGGCAGCACAACCTGATGTGGATGGATTTTTGGTTGGTGGAGC
TTCTCTAAAGCCGGAGTTCATCGATATTATCAAGTCTGCCACAGTGAAGA
AGAATTGAAGTTAAAGACCAAGCTACTCGGCTTGCTGATGCCTGCAGTTT
TCTCTGTTATGCGTTCTGGAAACTAGCGTTGTAATTTTTGTGGTCTGTTA
AGTGTTACCAACGCCTTTCCAGTATAATAAGTTAAATCTTCAGAATTCTT
AAGAATCTCTTTCCTATTTCAGTGGGGATTTGAAACTTATCATTGTGGAT
TTAATAAATGGTTGCTTTTCCCTTCTTGCAAAAAAAAAAAAAAAA
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