CF832962

Overview
NameCF832962
Unique NameCF832962
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length545
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832962 vs. ExPASy Swiss-Prot
Match: TPIS_CHLAA (Triosephosphate isomerase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=tpiA PE=3 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 4.130e-21
Identity = 52/87 (59.77%), Postives = 63/87 (72.41%), Query Frame = 3
Query:   24 NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDII 281
            NVV+AYEP+WAIGTG  ATPA AQ +HA +R  L +   +E+AA+ RI YGGSV   N  EL AQPD+DG LVGGASL+   F+ II
Sbjct:  161 NVVIAYEPIWAIGTGDTATPADAQAMHAAIRATLAELYGSEIAATVRIQYGGSVKPDNIDELMAQPDIDGALVGGASLQAASFLRII 247          
BLAST of CF832962 vs. ExPASy Swiss-Prot
Match: TPIS_BACTN (Triosephosphate isomerase OS=Bacteroides thetaiotaomicron GN=tpiA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.130e-21
Identity = 46/82 (56.10%), Postives = 61/82 (74.39%), Query Frame = 3
Query:   15 NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 260
            ++  ++LAYEPVWAIGTGK A+P QAQE+HA +R  + D    E+A +T I+YGGS   +N KEL + PDVDG L+GGA+LK
Sbjct:  158 DFSKIILAYEPVWAIGTGKTASPEQAQEIHAFIRSIVADKYGKEIADNTSILYGGSCKPSNAKELFSNPDVDGGLIGGAALK 239          
BLAST of CF832962 vs. ExPASy Swiss-Prot
Match: TPIS_RHOFD (Triosephosphate isomerase OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=tpiA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 5.394e-21
Identity = 56/90 (62.22%), Postives = 69/90 (76.67%), Query Frame = 3
Query:   27 VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAAST-RIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 290
            VV+AYEPVWAIGTGK A+  QAQ+VH+ LR+ L+   +A + A   +IIYGGS+N AN  EL AQPD+DG LVGGASLK P+F+ II SA
Sbjct:  160 VVVAYEPVWAIGTGKTASIEQAQQVHSVLRQQLQ---AASIQADRIQIIYGGSMNAANAAELLAQPDIDGGLVGGASLKVPDFLSIIASA 246          
BLAST of CF832962 vs. ExPASy Swiss-Prot
Match: TPIS_KLEPN (Triosephosphate isomerase OS=Klebsiella pneumoniae GN=tpiA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 5.394e-21
Identity = 55/99 (55.56%), Postives = 70/99 (70.71%), Query Frame = 3
Query:   18 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVS---AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 302
            ++ VV+AYEPVWAIGTGK ATPAQAQ VH    K+++D+++   A++A    I YGGSVN  N  EL  QPD+DG LVGGASLK + F  I+K+A   K
Sbjct:  159 FEGVVIAYEPVWAIGTGKSATPAQAQAVH----KFIRDHIAKADAKIAEQVIIQYGGSVNAGNAAELFTQPDIDGALVGGASLKADAFAVIVKAAEAAK 253          
BLAST of CF832962 vs. ExPASy Swiss-Prot
Match: TPIS_SHESH (Triosephosphate isomerase OS=Shewanella sediminis (strain HAW-EB3) GN=tpiA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 7.045e-21
Identity = 51/92 (55.43%), Postives = 66/92 (71.74%), Query Frame = 3
Query:   18 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KPEFIDIIKSA 290
            +DN ++AYEP+WA+GTGK ATP QAQEVHA +RK L + VS  +  + RI+YGGSV  +N  +L AQPDVDG L+GG SL   EF+ +   A
Sbjct:  167 FDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRLSE-VSPYIGENIRILYGGSVTPSNAADLFAQPDVDGGLIGGVSLNSTEFLSLCSIA 257          
BLAST of CF832962 vs. ExPASy Swiss-Prot
Match: TPIS_SHEAM (Triosephosphate isomerase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=tpiA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 7.045e-21
Identity = 51/92 (55.43%), Postives = 67/92 (72.83%), Query Frame = 3
Query:   18 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KPEFIDIIKSA 290
            +DN ++AYEP+WA+GTGK ATP QAQEVHA +R+ L + VS  +  + RI+YGGSV  +N  +L AQPDVDG L+GGASL   EF+ +   A
Sbjct:  167 FDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRRRLSE-VSPFIGENVRILYGGSVTPSNAADLFAQPDVDGGLIGGASLNSTEFLTLCSIA 257          
BLAST of CF832962 vs. ExPASy Swiss-Prot
Match: TPIS_MYXXD (Triosephosphate isomerase OS=Myxococcus xanthus (strain DK 1622) GN=tpiA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 7.045e-21
Identity = 55/89 (61.80%), Postives = 62/89 (69.66%), Query Frame = 3
Query:   30 VLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP-EFIDIIKSAT 293
            VLAYEPVWAIGTG+ AT AQAQEVHA +R  ++     E A   RI YGGSV   N  EL  QPDVDG LVGGASLK  +F  I+K+AT
Sbjct:  168 VLAYEPVWAIGTGRNATAAQAQEVHAAIRGLVERLYDGETAGRVRIQYGGSVKPDNAAELLGQPDVDGALVGGASLKAGDFAAIVKAAT 256          
BLAST of CF832962 vs. ExPASy Swiss-Prot
Match: TPIS_YERPY (Triosephosphate isomerase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=tpiA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 9.200e-21
Identity = 53/100 (53.00%), Postives = 67/100 (67.00%), Query Frame = 3
Query:    9 ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVS---AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVK 299
            +  ++  V+AYEP+WAIGTGK ATPAQAQ VH    K+++D+++   A VAA   I YGGSVN  N  EL  QPD+DG LVGGASLK +   +I  A  K
Sbjct:  156 VKAFEGAVIAYEPIWAIGTGKSATPAQAQAVH----KFIRDHIAKQDAAVAAQVIIQYGGSVNDKNAAELFTQPDIDGALVGGASLKADAFAVIVKAAAK 251          
BLAST of CF832962 vs. ExPASy Swiss-Prot
Match: TPIS_YERPS (Triosephosphate isomerase OS=Yersinia pseudotuberculosis GN=tpiA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 9.200e-21
Identity = 53/100 (53.00%), Postives = 67/100 (67.00%), Query Frame = 3
Query:    9 ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVS---AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVK 299
            +  ++  V+AYEP+WAIGTGK ATPAQAQ VH    K+++D+++   A VAA   I YGGSVN  N  EL  QPD+DG LVGGASLK +   +I  A  K
Sbjct:  156 VKAFEGAVIAYEPIWAIGTGKSATPAQAQAVH----KFIRDHIAKQDAAVAAQVIIQYGGSVNDKNAAELFTQPDIDGALVGGASLKADAFAVIVKAAAK 251          
BLAST of CF832962 vs. ExPASy Swiss-Prot
Match: TPIS_YERPP (Triosephosphate isomerase OS=Yersinia pestis (strain Pestoides F) GN=tpiA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 9.200e-21
Identity = 53/100 (53.00%), Postives = 67/100 (67.00%), Query Frame = 3
Query:    9 ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVS---AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVK 299
            +  ++  V+AYEP+WAIGTGK ATPAQAQ VH    K+++D+++   A VAA   I YGGSVN  N  EL  QPD+DG LVGGASLK +   +I  A  K
Sbjct:  156 VKAFEGAVIAYEPIWAIGTGKSATPAQAQAVH----KFIRDHIAKQDAAVAAQVIIQYGGSVNDKNAAELFTQPDIDGALVGGASLKADAFAVIVKAAAK 251          
The following BLAST results are available for this feature:
BLAST of CF832962 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_CHLAA4.130e-2159.77Triosephosphate isomerase OS=Chloroflexus aurantia... [more]
TPIS_BACTN4.130e-2156.10Triosephosphate isomerase OS=Bacteroides thetaiota... [more]
TPIS_RHOFD5.394e-2162.22Triosephosphate isomerase OS=Rhodoferax ferrireduc... [more]
TPIS_KLEPN5.394e-2155.56Triosephosphate isomerase OS=Klebsiella pneumoniae... [more]
TPIS_SHESH7.045e-2155.43Triosephosphate isomerase OS=Shewanella sediminis ... [more]
TPIS_SHEAM7.045e-2155.43Triosephosphate isomerase OS=Shewanella amazonensi... [more]
TPIS_MYXXD7.045e-2161.80Triosephosphate isomerase OS=Myxococcus xanthus (s... [more]
TPIS_YERPY9.200e-2153.00Triosephosphate isomerase OS=Yersinia pseudotuberc... [more]
TPIS_YERPS9.200e-2153.00Triosephosphate isomerase OS=Yersinia pseudotuberc... [more]
TPIS_YERPP9.200e-2153.00Triosephosphate isomerase OS=Yersinia pestis (stra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02L22_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02L22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832962 ID=CF832962; Name=CF832962; organism=Citrus sinensis; type=EST; length=545bp
CAGAAAAAATATCCAACTGGGACAATGTTGTGTTGGCTTATGAGCCAGTT
TGGGCCATTGGTACCGGGAAGGTTGCAACCCCTGCTCAGGCTCAGGAAGT
CCATGCTGAACTGAGGAAATGGCTTAAAGACAATGTCAGTGCTGAAGTTG
CAGCATCAACTAGAATCATCTACGGAGGTTCTGTAAATGGAGCAAATTGC
AAAGAATTGGCAGCACAACCTGATGTGGATGGATTTTTGGTTGGTGGAGC
TTCTCTAAAGCCGGAGTTCATCGATATTATCAAGTCTGCCACAGTGAAGA
AGAATTGAAGTTAAAGACCAAGCTACTCGGCTTGCTGATGCCTGCAGTTT
TCTCTGTTATGCGTTCTGGAAACTAGCGTTGTAATTTTTGTGGTCTGTTA
AGTGTTACCAACGCCTTTCCAGTATAATAAGTTAAATCTTCAGAATTCTT
AAGAATCTCTTTCCTATTTCAGTGGGGATTTGAAACTTATCATTGTGGAT
TTAATAAATGGTTGCTTTTCCCTTCTTGCAAAAAAAAAAAAAAAA
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