CF832962

Overview
NameCF832962
Unique NameCF832962
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length545
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2749 contig Csv1_Contig2749:162..706. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832962 vs. ExPASy Swiss-Prot
Match: TPIS_PIG (Triosephosphate isomerase OS=Sus scrofa GN=TPI1 PE=2 SV=4)

HSP 1 Score: 145.591 bits (366), Expect = 1.462e-34
Identity = 69/95 (72.63%), Postives = 78/95 (82.11%), Query Frame = 3
Query:    3 EKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 287
            + + +W+ VVLAYEPVWAIGTGK ATP QAQEVH +LR WLK +V   VA STRIIYGGSV GA CKELA+QPDVDGF V GASLKPEF+DII +
Sbjct:  153 DNVKDWNKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKTHVPEAVAHSTRIIYGGSVTGATCKELASQPDVDGFRVSGASLKPEFVDIINA 247          
BLAST of CF832962 vs. ExPASy Swiss-Prot
Match: TPIS_LATCH (Triosephosphate isomerase OS=Latimeria chalumnae PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.462e-34
Identity = 66/91 (72.53%), Postives = 78/91 (85.71%), Query Frame = 3
Query:    3 EKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFID 275
            + + +W  VVLAYEPVWAIGTGK A+P Q+QE+H +LRKWLK+NVS  VA S RIIYGGSV GA CKELA++PDVDGFLVGGASLKPEF++
Sbjct:  151 DDVKDWSKVVLAYEPVWAIGTGKTASPQQSQELHGKLRKWLKENVSETVADSVRIIYGGSVTGATCKELASEPDVDGFLVGGASLKPEFVE 241          
BLAST of CF832962 vs. ExPASy Swiss-Prot
Match: TPISB_DANRE (Triosephosphate isomerase B OS=Danio rerio GN=tpi1b PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.462e-34
Identity = 69/95 (72.63%), Postives = 78/95 (82.11%), Query Frame = 3
Query:    3 EKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 287
            + + +W  VVLAYEPVWAIGTGK A+P QAQEVH +LR+WLK NVS  VA S RIIYGGSV G  CKELA+Q D+DGFLVGGASLKPEFIDII +
Sbjct:  152 DNVKDWSKVVLAYEPVWAIGTGKTASPQQAQEVHDKLRQWLKTNVSEAVANSVRIIYGGSVTGGTCKELASQKDLDGFLVGGASLKPEFIDIINA 246          
BLAST of CF832962 vs. ExPASy Swiss-Prot
Match: TPIC_SECCE (Triosephosphate isomerase, chloroplastic OS=Secale cereale PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.462e-34
Identity = 71/101 (70.30%), Postives = 83/101 (82.18%), Query Frame = 3
Query:    3 EKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSATVKK 302
            + I++W NVV+AYEPVWAIGTGKVA+P QAQEVHA +R WLK NVSA+VA++ RIIYGGSVN ANC ELA + D+DGFLVGGASLK P+F  I  S T KK
Sbjct:  195 DNITDWTNVVIAYEPVWAIGTGKVASPEQAQEVHAAVRDWLKTNVSADVASTVRIIYGGSVNAANCAELAKKEDIDGFLVGGASLKGPDFATICNSVTSKK 295          
BLAST of CF832962 vs. ExPASy Swiss-Prot
Match: TPIC_FRAAN (Triosephosphate isomerase, chloroplastic OS=Fragaria ananassa GN=TPI PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.910e-34
Identity = 69/101 (68.32%), Postives = 83/101 (82.18%), Query Frame = 3
Query:    3 EKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSATVKK 302
            + + +W+N+V+AYEPVWAIGTGKVA+P QAQEVH  +R+WLK NVSAEVA+ TRIIYGGSVNG N  ELA + D+DGFLVGGASLK PEF  I+ + T KK
Sbjct:  211 DAVPSWENIVVAYEPVWAIGTGKVASPQQAQEVHVAVREWLKKNVSAEVASKTRIIYGGSVNGGNSAELAKEEDIDGFLVGGASLKGPEFATIVNAVTSKK 311          
BLAST of CF832962 vs. ExPASy Swiss-Prot
Match: TPIS_NEUCR (Triosephosphate isomerase OS=Neurospora crassa GN=tpi-1 PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.494e-34
Identity = 66/95 (69.47%), Postives = 80/95 (84.21%), Query Frame = 3
Query:    3 EKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 287
            ++I++W NVV+AYEP+WAIGTG VAT  QAQEVHA +R WLK NVS +VA  TRI+YGGSVN  NCK+LA + D+DGFLVGGASLKPEF+DII +
Sbjct:  152 KEINDWKNVVIAYEPIWAIGTGLVATKEQAQEVHAAIRSWLKQNVSDKVAEETRILYGGSVNAKNCKDLAKEQDIDGFLVGGASLKPEFVDIINA 246          
BLAST of CF832962 vs. ExPASy Swiss-Prot
Match: TPIC_ARATH (Triosephosphate isomerase, chloroplastic OS=Arabidopsis thaliana GN=TIM PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.494e-34
Identity = 70/101 (69.31%), Postives = 81/101 (80.20%), Query Frame = 3
Query:    3 EKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSATVKK 302
            + + +WDN+V+AYEPVWAIGTGKVA+P QAQEVH  +R WLK NVS EVA+ TRIIYGGSVNG N  ELA + D+DGFLVGGASLK PEF  I+ S T KK
Sbjct:  212 DAVPSWDNIVVAYEPVWAIGTGKVASPQQAQEVHVAVRGWLKKNVSEEVASKTRIIYGGSVNGGNSAELAKEEDIDGFLVGGASLKGPEFATIVNSVTSKK 312          
BLAST of CF832962 vs. ExPASy Swiss-Prot
Match: TPIS_GRAVE (Triosephosphate isomerase, cytosolic (Fragment) OS=Gracilaria verrucosa GN=TPI1 PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.617e-33
Identity = 64/95 (67.37%), Postives = 82/95 (86.32%), Query Frame = 3
Query:    3 EKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 287
            + IS+W +VV+AYEPVWAIGTGKVATP QA++VH  +R WL +NVS +VAASTRI+YGGSV+ ANC+ LA QP++DGFLVGGAS+KP F++I+ S
Sbjct:  147 DAISDWSDVVIAYEPVWAIGTGKVATPEQAEQVHEAVRAWLANNVSPQVAASTRILYGGSVSPANCESLAKQPNIDGFLVGGASMKPTFLEIVDS 241          
BLAST of CF832962 vs. ExPASy Swiss-Prot
Match: TPIS_PARBA (Triosephosphate isomerase OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=TPI1 PE=1 SV=3)

HSP 1 Score: 140.198 bits (352), Expect = 6.143e-33
Identity = 63/92 (68.48%), Postives = 76/92 (82.61%), Query Frame = 3
Query:   12 SNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 287
            + W+ VV+AYEP+WAIGTGKVAT  QAQEVHA +RKWL + +S E A + R+IYGGSV   NC++LAAQPDVDGFLVGGASLKP F+DII +
Sbjct:  156 AEWNKVVIAYEPIWAIGTGKVATTEQAQEVHASIRKWLNEKISPEAAENIRVIYGGSVTENNCRDLAAQPDVDGFLVGGASLKPAFVDIINA 247          
BLAST of CF832962 vs. ExPASy Swiss-Prot
Match: TPIS_EMENI (Triosephosphate isomerase OS=Emericella nidulans GN=tpiA PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 8.023e-33
Identity = 64/90 (71.11%), Postives = 76/90 (84.44%), Query Frame = 3
Query:   18 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 287
            W  VV+AYEPVWAIGTGKVAT  QAQEVH+ +RKWLKD +SAE A +TRIIYGGSV+  NCK+LA + D+DGFLVGGASLKP F+DI+ +
Sbjct:  158 WAKVVIAYEPVWAIGTGKVATTEQAQEVHSAIRKWLKDAISAEAAENTRIIYGGSVSEKNCKDLAKEADIDGFLVGGASLKPAFVDIVNA 247          
The following BLAST results are available for this feature:
BLAST of CF832962 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_PIG1.462e-3472.63Triosephosphate isomerase OS=Sus scrofa GN=TPI1 PE... [more]
TPIS_LATCH1.462e-3472.53Triosephosphate isomerase OS=Latimeria chalumnae P... [more]
TPISB_DANRE1.462e-3472.63Triosephosphate isomerase B OS=Danio rerio GN=tpi1... [more]
TPIC_SECCE1.462e-3470.30Triosephosphate isomerase, chloroplastic OS=Secale... [more]
TPIC_FRAAN1.910e-3468.32Triosephosphate isomerase, chloroplastic OS=Fragar... [more]
TPIS_NEUCR2.494e-3469.47Triosephosphate isomerase OS=Neurospora crassa GN=... [more]
TPIC_ARATH2.494e-3469.31Triosephosphate isomerase, chloroplastic OS=Arabid... [more]
TPIS_GRAVE1.617e-3367.37Triosephosphate isomerase, cytosolic (Fragment) OS... [more]
TPIS_PARBA6.143e-3368.48Triosephosphate isomerase OS=Paracoccidioides bras... [more]
TPIS_EMENI8.023e-3371.11Triosephosphate isomerase OS=Emericella nidulans G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02L22_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02L22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832962 ID=CF832962; Name=CF832962; organism=Citrus sinensis; type=EST; length=545bp
CAGAAAAAATATCCAACTGGGACAATGTTGTGTTGGCTTATGAGCCAGTT
TGGGCCATTGGTACCGGGAAGGTTGCAACCCCTGCTCAGGCTCAGGAAGT
CCATGCTGAACTGAGGAAATGGCTTAAAGACAATGTCAGTGCTGAAGTTG
CAGCATCAACTAGAATCATCTACGGAGGTTCTGTAAATGGAGCAAATTGC
AAAGAATTGGCAGCACAACCTGATGTGGATGGATTTTTGGTTGGTGGAGC
TTCTCTAAAGCCGGAGTTCATCGATATTATCAAGTCTGCCACAGTGAAGA
AGAATTGAAGTTAAAGACCAAGCTACTCGGCTTGCTGATGCCTGCAGTTT
TCTCTGTTATGCGTTCTGGAAACTAGCGTTGTAATTTTTGTGGTCTGTTA
AGTGTTACCAACGCCTTTCCAGTATAATAAGTTAAATCTTCAGAATTCTT
AAGAATCTCTTTCCTATTTCAGTGGGGATTTGAAACTTATCATTGTGGAT
TTAATAAATGGTTGCTTTTCCCTTCTTGCAAAAAAAAAAAAAAAA
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