CF832962

Overview
NameCF832962
Unique NameCF832962
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length545
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2749 contig Csv1_Contig2749:162..706. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832962 vs. ExPASy Swiss-Prot
Match: TPIS_YEAST (Triosephosphate isomerase OS=Saccharomyces cerevisiae GN=TPI1 PE=1 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 7.771e-28
Identity = 56/95 (58.95%), Postives = 71/95 (74.74%), Query Frame = 3
Query:    3 EKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 287
            E++ +W NVV+AYEPVWAIGTG  ATP  AQ++HA +RK+L   +  + A+  RI+YGGS NG+N      + DVDGFLVGGASLKPEF+DII S
Sbjct:  152 EEVKDWTNVVVAYEPVWAIGTGLAATPEDAQDIHASIRKFLASKLGDKAASELRILYGGSANGSNAVTFKDKADVDGFLVGGASLKPEFVDIINS 246          
BLAST of CF832962 vs. ExPASy Swiss-Prot
Match: TPIS_TRYCR (Triosephosphate isomerase, glycosomal OS=Trypanosoma cruzi PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 7.771e-28
Identity = 55/90 (61.11%), Postives = 70/90 (77.78%), Query Frame = 3
Query:   18 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 287
            W  VV+AYEPVWAIGTGKVATP QAQEVH  LR+W++  +  ++AA  RI+YGGSV   N + L    D++GFLVGGASLKPEF++II++
Sbjct:  160 WSRVVIAYEPVWAIGTGKVATPQQAQEVHELLRRWVRSKLGTDIAAQLRILYGGSVTAKNARTLYQMRDINGFLVGGASLKPEFVEIIEA 249          
BLAST of CF832962 vs. ExPASy Swiss-Prot
Match: TPIS_DICDI (Triosephosphate isomerase OS=Dictyostelium discoideum GN=tpiA PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 7.771e-28
Identity = 59/96 (61.46%), Postives = 71/96 (73.96%), Query Frame = 3
Query:   18 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KPEFIDIIKSATVKK 302
            W  +V+AYEPVWAIGTG VATP +AQ+ H  +RKW+ + VS +VA  T I+YGGSVN  NC  L+ Q D+DGFLVGGASL   +FI IIKSA  KK
Sbjct:  161 WSKIVIAYEPVWAIGTGAVATPQEAQDTHVFIRKWISEKVSEDVAKKTSIMYGGSVNADNCHNLSKQSDIDGFLVGGASLVASDFIAIIKSAVPKK 256          
BLAST of CF832962 vs. ExPASy Swiss-Prot
Match: TPIS_YARLI (Triosephosphate isomerase OS=Yarrowia lipolytica GN=TPI1 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.325e-27
Identity = 60/94 (63.83%), Postives = 70/94 (74.47%), Query Frame = 3
Query:    6 KISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 287
            KI +W NVV+AYEPVWAIGTG  AT   AQ++H E+R +LKD + A+ A   RIIYGGSVNG N      + DVDGFLVGGASLKPEF+DII S
Sbjct:  153 KIKDWSNVVIAYEPVWAIGTGLAATAEDAQQIHHEIRAYLKDKIGAQ-ADKVRIIYGGSVNGKNSGTFKDKSDVDGFLVGGASLKPEFVDIINS 245          
BLAST of CF832962 vs. ExPASy Swiss-Prot
Match: TPIS_KLULA (Triosephosphate isomerase OS=Kluyveromyces lactis GN=TPI1 PE=3 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 1.325e-27
Identity = 57/95 (60.00%), Postives = 71/95 (74.74%), Query Frame = 3
Query:    3 EKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 287
            EK+ +W NVV+AYEPVWAIGTG  AT   AQ++H  +R++L + +S +VA S RI+YGGS NG N      + DVDGFLVGGASLKPEF+DII S
Sbjct:  152 EKVQDWTNVVVAYEPVWAIGTGLAATAEDAQDIHHSIREFLAEKLSRDVADSVRILYGGSANGKNAVTFKDKADVDGFLVGGASLKPEFVDIINS 246          
BLAST of CF832962 vs. ExPASy Swiss-Prot
Match: TPIS_CANGA (Triosephosphate isomerase OS=Candida glabrata GN=TPI1 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.465e-26
Identity = 54/94 (57.45%), Postives = 68/94 (72.34%), Query Frame = 3
Query:    6 KISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 287
            ++ +W NVV+AYEPVWAIGTG  AT   AQ++H  +R +L + +  + A  TRI+YGGS NGAN      + DVDGFLVGGASLKPEF+DII S
Sbjct:  153 EVKDWTNVVIAYEPVWAIGTGLAATAEDAQDIHHSIRSYLAEKLGKDTAEKTRILYGGSANGANAGTFKDKADVDGFLVGGASLKPEFVDIINS 246          
BLAST of CF832962 vs. ExPASy Swiss-Prot
Match: TPIS_AEDTO (Triosephosphate isomerase (Fragment) OS=Aedes togoi GN=Tpi PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.465e-26
Identity = 54/74 (72.97%), Postives = 62/74 (83.78%), Query Frame = 3
Query:    3 EKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPD 224
            +K+ +W NVV+AYEPVWAIGTGK ATP QAQEVH  LRKW  DNVSA+V+AS RI YGGSV  ANC+ELAA+PD
Sbjct:  133 DKVKDWSNVVVAYEPVWAIGTGKTATPEQAQEVHVALRKWFTDNVSADVSASIRIQYGGSVTAANCRELAAKPD 206          
BLAST of CF832962 vs. ExPASy Swiss-Prot
Match: TPIS_CULPI (Triosephosphate isomerase (Fragment) OS=Culex pipiens GN=Tpi PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 5.569e-26
Identity = 52/74 (70.27%), Postives = 63/74 (85.14%), Query Frame = 3
Query:    3 EKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPD 224
            +K+ +W NVV+AYEPVWAIGTGK ATP QAQEVHA LRKW  +NVSA+V+++ RI YGGSV  ANC+ELAA+PD
Sbjct:  133 DKVKDWSNVVIAYEPVWAIGTGKTATPEQAQEVHAALRKWFTENVSADVSSAIRIQYGGSVTAANCRELAAKPD 206          
BLAST of CF832962 vs. ExPASy Swiss-Prot
Match: TPIS_KLUMA (Triosephosphate isomerase OS=Kluyveromyces marxianus GN=TPI1 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.620e-25
Identity = 54/95 (56.84%), Postives = 67/95 (70.53%), Query Frame = 3
Query:    3 EKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 287
            +K+ +W NVV+AYEPVWAIGTG  AT   AQ +H  +R++L   +S + A   RI+YGGS NG N      + DVDGFLVGGASLKPEF+DII S
Sbjct:  152 DKVQDWTNVVVAYEPVWAIGTGLAATSDDAQAIHHSIREFLAKKLSKDTAEKIRILYGGSANGKNAVTFKDKADVDGFLVGGASLKPEFVDIINS 246          
BLAST of CF832962 vs. ExPASy Swiss-Prot
Match: TPIS_ANOME (Triosephosphate isomerase (Fragment) OS=Anopheles merus GN=Tpi PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.791e-24
Identity = 50/73 (68.49%), Postives = 60/73 (82.19%), Query Frame = 3
Query:    6 KISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPD 224
            ++ +W NVV+AYEPVWAIGTGK ATP QAQEVHA LRKW  +NVSA+V+ + RI YGGSV  ANC+ELA +PD
Sbjct:  134 QVKDWSNVVIAYEPVWAIGTGKTATPEQAQEVHAALRKWFTENVSADVSNAIRIQYGGSVTAANCRELAGKPD 206          
The following BLAST results are available for this feature:
BLAST of CF832962 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_YEAST7.771e-2858.95Triosephosphate isomerase OS=Saccharomyces cerevis... [more]
TPIS_TRYCR7.771e-2861.11Triosephosphate isomerase, glycosomal OS=Trypanoso... [more]
TPIS_DICDI7.771e-2861.46Triosephosphate isomerase OS=Dictyostelium discoid... [more]
TPIS_YARLI1.325e-2763.83Triosephosphate isomerase OS=Yarrowia lipolytica G... [more]
TPIS_KLULA1.325e-2760.00Triosephosphate isomerase OS=Kluyveromyces lactis ... [more]
TPIS_CANGA1.465e-2657.45Triosephosphate isomerase OS=Candida glabrata GN=T... [more]
TPIS_AEDTO1.465e-2672.97Triosephosphate isomerase (Fragment) OS=Aedes togo... [more]
TPIS_CULPI5.569e-2670.27Triosephosphate isomerase (Fragment) OS=Culex pipi... [more]
TPIS_KLUMA1.620e-2556.84Triosephosphate isomerase OS=Kluyveromyces marxian... [more]
TPIS_ANOME1.791e-2468.49Triosephosphate isomerase (Fragment) OS=Anopheles ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02L22_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02L22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832962 ID=CF832962; Name=CF832962; organism=Citrus sinensis; type=EST; length=545bp
CAGAAAAAATATCCAACTGGGACAATGTTGTGTTGGCTTATGAGCCAGTT
TGGGCCATTGGTACCGGGAAGGTTGCAACCCCTGCTCAGGCTCAGGAAGT
CCATGCTGAACTGAGGAAATGGCTTAAAGACAATGTCAGTGCTGAAGTTG
CAGCATCAACTAGAATCATCTACGGAGGTTCTGTAAATGGAGCAAATTGC
AAAGAATTGGCAGCACAACCTGATGTGGATGGATTTTTGGTTGGTGGAGC
TTCTCTAAAGCCGGAGTTCATCGATATTATCAAGTCTGCCACAGTGAAGA
AGAATTGAAGTTAAAGACCAAGCTACTCGGCTTGCTGATGCCTGCAGTTT
TCTCTGTTATGCGTTCTGGAAACTAGCGTTGTAATTTTTGTGGTCTGTTA
AGTGTTACCAACGCCTTTCCAGTATAATAAGTTAAATCTTCAGAATTCTT
AAGAATCTCTTTCCTATTTCAGTGGGGATTTGAAACTTATCATTGTGGAT
TTAATAAATGGTTGCTTTTCCCTTCTTGCAAAAAAAAAAAAAAAA
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