CF832971

Overview
NameCF832971
Unique NameCF832971
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9466 contig Csv1_Contig9466:120..934. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF832971 vs. ExPASy Swiss-Prot
Match: ARF1_XENLA (ADP-ribosylation factor 1 OS=Xenopus laevis GN=arf1 PE=2 SV=2)

HSP 1 Score: 302.368 bits (773), Expect = 2.011e-81
Identity = 148/161 (91.93%), Postives = 154/161 (95.65%), Query Frame = -3 
Query:  331 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRQWYIQSTCATSGEGLYEGLDWLSNNIANK 813
            ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR R WYIQ+TCATSG+GLYEGLDWLSN + N+
Sbjct:   20 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
[Close]
BLAST of CF832971 vs. ExPASy Swiss-Prot
Match: ARF1_RAT (ADP-ribosylation factor 1 OS=Rattus norvegicus GN=Arf1 PE=1 SV=2)

HSP 1 Score: 302.368 bits (773), Expect = 2.011e-81
Identity = 148/161 (91.93%), Postives = 154/161 (95.65%), Query Frame = -3 
Query:  331 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRQWYIQSTCATSGEGLYEGLDWLSNNIANK 813
            ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR R WYIQ+TCATSG+GLYEGLDWLSN + N+
Sbjct:   20 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
[Close]
BLAST of CF832971 vs. ExPASy Swiss-Prot
Match: ARF1_MOUSE (ADP-ribosylation factor 1 OS=Mus musculus GN=Arf1 PE=1 SV=2)

HSP 1 Score: 302.368 bits (773), Expect = 2.011e-81
Identity = 148/161 (91.93%), Postives = 154/161 (95.65%), Query Frame = -3 
Query:  331 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRQWYIQSTCATSGEGLYEGLDWLSNNIANK 813
            ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR R WYIQ+TCATSG+GLYEGLDWLSN + N+
Sbjct:   20 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
[Close]
BLAST of CF832971 vs. ExPASy Swiss-Prot
Match: ARF1_MACFA (ADP-ribosylation factor 1 OS=Macaca fascicularis GN=ARF1 PE=2 SV=3)

HSP 1 Score: 302.368 bits (773), Expect = 2.011e-81
Identity = 148/161 (91.93%), Postives = 154/161 (95.65%), Query Frame = -3 
Query:  331 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRQWYIQSTCATSGEGLYEGLDWLSNNIANK 813
            ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR R WYIQ+TCATSG+GLYEGLDWLSN + N+
Sbjct:   20 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
[Close]
BLAST of CF832971 vs. ExPASy Swiss-Prot
Match: ARF1_HUMAN (ADP-ribosylation factor 1 OS=Homo sapiens GN=ARF1 PE=1 SV=2)

HSP 1 Score: 302.368 bits (773), Expect = 2.011e-81
Identity = 148/161 (91.93%), Postives = 154/161 (95.65%), Query Frame = -3 
Query:  331 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRQWYIQSTCATSGEGLYEGLDWLSNNIANK 813
            ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR R WYIQ+TCATSG+GLYEGLDWLSN + N+
Sbjct:   20 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
[Close]
BLAST of CF832971 vs. ExPASy Swiss-Prot
Match: ARF1_BOVIN (ADP-ribosylation factor 1 OS=Bos taurus GN=ARF1 PE=1 SV=2)

HSP 1 Score: 302.368 bits (773), Expect = 2.011e-81
Identity = 148/161 (91.93%), Postives = 154/161 (95.65%), Query Frame = -3 
Query:  331 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRQWYIQSTCATSGEGLYEGLDWLSNNIANK 813
            ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR R WYIQ+TCATSG+GLYEGLDWLSN + N+
Sbjct:   20 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
[Close]
BLAST of CF832971 vs. ExPASy Swiss-Prot
Match: ARF_DUGJA (ADP-ribosylation factor OS=Dugesia japonica PE=2 SV=3)

HSP 1 Score: 301.982 bits (772), Expect = 2.627e-81
Identity = 147/162 (90.74%), Postives = 154/162 (95.06%), Query Frame = -3 
Query:  328 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRQWYIQSTCATSGEGLYEGLDWLSNNIANKA 813
            ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RMLNEDELRDAVLLVFANKQDLPNAMN AEITDKLGLHSLR R WYIQ+TCATSG+GLYEGLDWLS  + N++
Sbjct:   20 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVLLVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNRS 181
[Close]
BLAST of CF832971 vs. ExPASy Swiss-Prot
Match: ARF1_SCHPO (ADP-ribosylation factor 1 OS=Schizosaccharomyces pombe GN=arf1 PE=2 SV=2)

HSP 1 Score: 301.597 bits (771), Expect = 3.430e-81
Identity = 144/161 (89.44%), Postives = 155/161 (96.27%), Query Frame = -3 
Query:  331 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRQWYIQSTCATSGEGLYEGLDWLSNNIANK 813
            ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY+NISFTVWDVGGQDKIRPLWRHYFQNTQG+IFVVDSNDR+R+ EA +EL RMLNEDELRDA+LLVFANKQDLPNAMNAAEITDKLGLHSLR RQWYIQ+TCATSG+GLYEGL+WLS N+ N+
Sbjct:   20 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYRNISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRDALLLVFANKQDLPNAMNAAEITDKLGLHSLRHRQWYIQATCATSGDGLYEGLEWLSTNLKNQ 180
[Close]
BLAST of CF832971 vs. ExPASy Swiss-Prot
Match: ARF1_LOCMI (ADP-ribosylation factor 1 OS=Locusta migratoria GN=ARF1 PE=2 SV=2)

HSP 1 Score: 301.212 bits (770), Expect = 4.480e-81
Identity = 146/160 (91.25%), Postives = 153/160 (95.62%), Query Frame = -3 
Query:  334 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRQWYIQSTCATSGEGLYEGLDWLSNNIAN 813
            ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ EAR+EL RML EDELRDAVLL+FANKQDLPNAMNAAEITDKLGLHSLR R WYIQ+TCATSG+GLYEGLDWLSN + N
Sbjct:   20 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLAEDELRDAVLLIFANKQDLPNAMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLKN 179
[Close]
BLAST of CF832971 vs. ExPASy Swiss-Prot
Match: ARF1_DROME (ADP-ribosylation factor 1 OS=Drosophila melanogaster GN=Arf79F PE=1 SV=2)

HSP 1 Score: 301.212 bits (770), Expect = 4.480e-81
Identity = 146/160 (91.25%), Postives = 153/160 (95.62%), Query Frame = -3 
Query:  334 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRQWYIQSTCATSGEGLYEGLDWLSNNIAN 813
            ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ EAR+EL RML EDELRDAVLL+FANKQDLPNAMNAAEITDKLGLHSLR R WYIQ+TCATSG+GLYEGLDWLSN + N
Sbjct:   20 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLAEDELRDAVLLIFANKQDLPNAMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLKN 179
The following BLAST results are available for this feature:
BLAST of CF832971 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
ARF1_XENLA2.011e-8191.93ADP-ribosylation factor 1 OS=Xenopus laevis GN=arf... [more]
ARF1_RAT2.011e-8191.93ADP-ribosylation factor 1 OS=Rattus norvegicus GN=... [more]
ARF1_MOUSE2.011e-8191.93ADP-ribosylation factor 1 OS=Mus musculus GN=Arf1 ... [more]
ARF1_MACFA2.011e-8191.93ADP-ribosylation factor 1 OS=Macaca fascicularis G... [more]
ARF1_HUMAN2.011e-8191.93ADP-ribosylation factor 1 OS=Homo sapiens GN=ARF1 ... [more]
ARF1_BOVIN2.011e-8191.93ADP-ribosylation factor 1 OS=Bos taurus GN=ARF1 PE... [more]
ARF_DUGJA2.627e-8190.74ADP-ribosylation factor OS=Dugesia japonica PE=2 S... [more]
ARF1_SCHPO3.430e-8189.44ADP-ribosylation factor 1 OS=Schizosaccharomyces p... [more]
ARF1_LOCMI4.480e-8191.25ADP-ribosylation factor 1 OS=Locusta migratoria GN... [more]
ARF1_DROME4.480e-8191.25ADP-ribosylation factor 1 OS=Drosophila melanogast... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_02M03_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02M03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832971 ID=CF832971; Name=CF832971; organism=Citrus sinensis; type=EST; length=815bp
TTTTTTTTTTTTTTTAGAACAAATCAATAAGCCAATTATTGGTGACTAAA
AAATATCTGCAACGCTACAGACTAAAGAGAAGCTAAGAGGAATAACAGCC
AAAAAATCATTGAATTCTGAATAATGAGGGTAATTTAAACTCTACAATGA
CAATGCAGAAAACTTTATAGTATGGTGCCAATCAAATATCTAACACAAAC
AAATACATTCTACTGAACGTAGGTAGTAAAGCCCAAAAAGAATCCCCGAC
AAAATAAACAAAAGCATAGTAACATCATTCACATAGATGCTGCCGCAAAG
AGTCGCTCAAACTTGACCAATCACTTAAGCCTTGTTAGCGATGTTGTTGG
AGAGCCAGTCCAGACCCTCATAGAGTCCTTCCCCAGATGTTGCACATGTG
CTCTGGATGTACCATTGGCGTTGGCGAAGTGAGTGAAGACCAAGCTTATC
AGTGATCTCTGCAGCATTCATGGCATTTGGAAGATCTTGCTTGTTGGCAA
AAACAAGCAGCACAGCATCCCTCAACTCATCCTCATTCAGCATCCGGTGC
AGTTCATCTCTAGCTTCAACCACACGGTCACGATCATTGCTATCAACCAC
AAAGATAAGTCCTTGAGTGTTTTGGAAGTAATGTCTCCACAAAGGACGAA
TCTTATCCTGACCCCCAACATCCCAAACAGTGAAGCTAATGTTCTTATAT
TCCACAGTCTCCACGTTGAAACCAATGGTAGGAATGGTTGTCACAATCTC
ACCGAGCTTGAGCTTGTACAAAATGGTGGTCTTACCAGCAGCGTCGAGAC
CCACCATCAGAATTC
back to top