CF832971

Overview
NameCF832971
Unique NameCF832971
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9466 contig Csv1_Contig9466:120..934. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832971 vs. ExPASy Swiss-Prot
Match: SAR1B_ARATH (GTP-binding protein SAR1B OS=Arabidopsis thaliana GN=SAR1B PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.328e-16
Identity = 54/172 (31.40%), Postives = 85/172 (49.42%), Query Frame = -3
Query:  340 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL--------------HSLRQRQWYIQSTCATSGEGLYEGLDWLSNNI 813
            IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    R +W+ Y+     ++++VD+ D++R  E++ EL  +L+++ L     L+  NK D+P A +  E+   LGL                +R  + ++ S     G G  EG  WLS  I
Sbjct:   23 ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKRELDALLSDEALATVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVTLGDSGVRPLEVFMCSIVRKMGYG--EGFKWLSQYI 192          
BLAST of CF832971 vs. ExPASy Swiss-Prot
Match: SAR1_GIALA (GTP-binding protein Sar1 OS=Giardia lamblia GN=SAR1 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.958e-16
Identity = 51/166 (30.72%), Postives = 79/166 (47.59%), Query Frame = -3
Query:  349 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-----------RQRQWYIQSTCATSGEGLYEGLDWLS 813
            I+ VGLD AGK+T+L  LK     T  PT     + +   +I F  +D+GG +  R LW  Y  N+ G++F+VDS D  R  E+R  L  +L+  +L    +L+ +NK D+  A++   +    G+  L            QR   +      +  G  +G  WLS
Sbjct:   23 IVFVGLDNAGKSTLLAMLKNSATTTVAPTQQPTSQELVMGSIRFKTFDLGGHEVARQLWEQYVTNSDGIVFLVDSADPSRFEESRRTLQELLDNHDLATTPILILSNKVDIQTAVSMETMVQSFGIQHLLTGKGGSNLRSDQRPLEVFPCSVINRFGYTDGFKWLS 188          
BLAST of CF832971 vs. ExPASy Swiss-Prot
Match: ARLX_DICDI (ADP-ribosylation factor-like protein DDB_G0292332 OS=Dictyostelium discoideum GN=DDB_G0292332 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.918e-15
Identity = 44/123 (35.77%), Postives = 73/123 (59.35%), Query Frame = -3
Query:  481 ILMVGLDAAGKTTILYKLK--LGEIVTT---------IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYF-QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 813
            ++++G++  GKTT+LY +     E +TT         IPT GFNVE++  + + F +WD+GG++  R  +RHY       +IFV DS+D + + E++ E   + N+  L++   L+ ANKQDL
Sbjct:   20 VMILGVENVGKTTLLYNIYKFYSENITTTTLSSLPIPIPTNGFNVESIVIEQVKFDIWDIGGKETNRICYRHYLTSEIDSIIFVFDSSDINSLEESKKEYQYLKNQISLKNVPFLLVANKQDL 142          
BLAST of CF832971 vs. ExPASy Swiss-Prot
Match: CIN4_YEAST (GTP-binding protein CIN4 OS=Saccharomyces cerevisiae GN=CIN4 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.504e-15
Identity = 46/132 (34.85%), Postives = 75/132 (56.82%), Query Frame = -3
Query:  433 LMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELR---DAVLLVFANKQDLPNAMNAAEITDKLGLH 810
            L++GLD +GK+TI+ KL   +       +PT+GF + ++  K+++ ++WD+GGQ  +RP W +YF  TQ +I+ +D +   R  E   EL  ++N DE R   +  ++V  NK DL        + DK  LH
Sbjct:   20 LILGLDNSGKSTIVNKLLPKDEQNNDGIMPTVGFQIHSLMIKDVTISLWDIGGQRTLRPFWDNYFDKTQAMIWCIDVSLSMRFDETLQELKELINRDENRIGYECAVIVVLNKIDL--------VEDKSELH 143          
BLAST of CF832971 vs. ExPASy Swiss-Prot
Match: ARL9_HUMAN (ADP-ribosylation factor-like protein 9 OS=Homo sapiens GN=ARL9 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.243e-14
Identity = 49/144 (34.03%), Postives = 78/144 (54.17%), Query Frame = -3
Query:  388 ILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRQWYIQSTCAT 813
            IL++GLD AGKT++L+ L    +  ++ PT GF+   +  ++      ++GG    R  W  Y      LIFVVDS D  R+ EA+  LH+++  + +    L+VFANKQDL  A +  +I + L L  +   R+ ++  T  T
Sbjct:   21 ILVLGLDGAGKTSVLHSLASNRVQHSVAPTQGFHAVCINTEDSQMEFLEIGGSKPFRSYWEMYLSKGLLLIFVVDSADHSRLPEAKKYLHQLIAANPV--LPLVVFANKQDLEAAYHITDIHEALALSEVGNDRKMFLFGTYLT 162          
BLAST of CF832971 vs. ExPASy Swiss-Prot
Match: SAR1_ENCCU (Small COPII coat GTPase SAR1 OS=Encephalitozoon cuniculi GN=SAR1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.848e-12
Identity = 40/111 (36.04%), Postives = 62/111 (55.86%), Query Frame = -3
Query:  481 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 813
            IL +G+D AGKTT++ KLK       +PT   +   +E  N+   V D+GG    R  WR YF +  G++F+VD +D +R  E R+    +L+ +  + A ++V  NK DL
Sbjct:   38 ILFLGIDNAGKTTLVNKLKSDSTDVYMPTHHPSTSYIEIGNLKAQVIDLGGHTAARLAWRDYFYDCHGIVFIVDVHDVERFQEVREAYETVLSLE--KRAPVVVLMNKIDL 146          
BLAST of CF832971 vs. ExPASy Swiss-Prot
Match: SAR1_TOBAC (GTP-binding protein SAR1 OS=Nicotiana tabacum GN=SAR1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.337e-11
Identity = 34/93 (36.56%), Postives = 54/93 (58.06%), Query Frame = -3
Query:  535 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLN 813
            IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    R +W+ Y+     ++++VDS D++R  E++ EL  +L+
Sbjct:   23 ILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDSFDKERFAESKKELDALLS 115          
The following BLAST results are available for this feature:
BLAST of CF832971 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
SAR1B_ARATH1.328e-1631.40GTP-binding protein SAR1B OS=Arabidopsis thaliana ... [more]
SAR1_GIALA2.958e-1630.72GTP-binding protein Sar1 OS=Giardia lamblia GN=SAR... [more]
ARLX_DICDI1.918e-1535.77ADP-ribosylation factor-like protein DDB_G0292332 ... [more]
CIN4_YEAST2.504e-1534.85GTP-binding protein CIN4 OS=Saccharomyces cerevisi... [more]
ARL9_HUMAN1.243e-1434.03ADP-ribosylation factor-like protein 9 OS=Homo sap... [more]
SAR1_ENCCU9.848e-1236.04Small COPII coat GTPase SAR1 OS=Encephalitozoon cu... [more]
SAR1_TOBAC8.337e-1136.56GTP-binding protein SAR1 OS=Nicotiana tabacum GN=S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02M03_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02M03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832971 ID=CF832971; Name=CF832971; organism=Citrus sinensis; type=EST; length=815bp
TTTTTTTTTTTTTTTAGAACAAATCAATAAGCCAATTATTGGTGACTAAA
AAATATCTGCAACGCTACAGACTAAAGAGAAGCTAAGAGGAATAACAGCC
AAAAAATCATTGAATTCTGAATAATGAGGGTAATTTAAACTCTACAATGA
CAATGCAGAAAACTTTATAGTATGGTGCCAATCAAATATCTAACACAAAC
AAATACATTCTACTGAACGTAGGTAGTAAAGCCCAAAAAGAATCCCCGAC
AAAATAAACAAAAGCATAGTAACATCATTCACATAGATGCTGCCGCAAAG
AGTCGCTCAAACTTGACCAATCACTTAAGCCTTGTTAGCGATGTTGTTGG
AGAGCCAGTCCAGACCCTCATAGAGTCCTTCCCCAGATGTTGCACATGTG
CTCTGGATGTACCATTGGCGTTGGCGAAGTGAGTGAAGACCAAGCTTATC
AGTGATCTCTGCAGCATTCATGGCATTTGGAAGATCTTGCTTGTTGGCAA
AAACAAGCAGCACAGCATCCCTCAACTCATCCTCATTCAGCATCCGGTGC
AGTTCATCTCTAGCTTCAACCACACGGTCACGATCATTGCTATCAACCAC
AAAGATAAGTCCTTGAGTGTTTTGGAAGTAATGTCTCCACAAAGGACGAA
TCTTATCCTGACCCCCAACATCCCAAACAGTGAAGCTAATGTTCTTATAT
TCCACAGTCTCCACGTTGAAACCAATGGTAGGAATGGTTGTCACAATCTC
ACCGAGCTTGAGCTTGTACAAAATGGTGGTCTTACCAGCAGCGTCGAGAC
CCACCATCAGAATTC
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